From 77e0ebb43999bf9a956c0b2c6006b76b94657b18 Mon Sep 17 00:00:00 2001 From: aidaanva Date: Mon, 27 Mar 2023 11:21:02 +0200 Subject: [PATCH] add new test files based on nf-core/eager output --- ...GA_L1_JK2782_TGGCCGATCAACGA_dedupped.flagstat | 16 ++++++++++++++++ ...L1_JK2782_TGGCCGATCAACGA_mapping_raw.flagstat | 16 ++++++++++++++++ ...82_JK2782_TGGCCGATCAACGA_L1_filtered.flagstat | 16 ++++++++++++++++ 3 files changed, 48 insertions(+) create mode 100644 Test/JK2782_JK2782_TGGCCGATCAACGA_L1_JK2782_TGGCCGATCAACGA_dedupped.flagstat create mode 100644 Test/JK2782_JK2782_TGGCCGATCAACGA_L1_JK2782_TGGCCGATCAACGA_mapping_raw.flagstat create mode 100644 Test/JK2782_JK2782_TGGCCGATCAACGA_L1_filtered.flagstat diff --git a/Test/JK2782_JK2782_TGGCCGATCAACGA_L1_JK2782_TGGCCGATCAACGA_dedupped.flagstat b/Test/JK2782_JK2782_TGGCCGATCAACGA_L1_JK2782_TGGCCGATCAACGA_dedupped.flagstat new file mode 100644 index 0000000..9a32c57 --- /dev/null +++ b/Test/JK2782_JK2782_TGGCCGATCAACGA_L1_JK2782_TGGCCGATCAACGA_dedupped.flagstat @@ -0,0 +1,16 @@ +1073 + 0 in total (QC-passed reads + QC-failed reads) +1073 + 0 primary +0 + 0 secondary +0 + 0 supplementary +0 + 0 duplicates +0 + 0 primary duplicates +1073 + 0 mapped (100.00% : N/A) +1073 + 0 primary mapped (100.00% : N/A) +0 + 0 paired in sequencing +0 + 0 read1 +0 + 0 read2 +0 + 0 properly paired (N/A : N/A) +0 + 0 with itself and mate mapped +0 + 0 singletons (N/A : N/A) +0 + 0 with mate mapped to a different chr +0 + 0 with mate mapped to a different chr (mapQ>=5) diff --git a/Test/JK2782_JK2782_TGGCCGATCAACGA_L1_JK2782_TGGCCGATCAACGA_mapping_raw.flagstat b/Test/JK2782_JK2782_TGGCCGATCAACGA_L1_JK2782_TGGCCGATCAACGA_mapping_raw.flagstat new file mode 100644 index 0000000..4c61774 --- /dev/null +++ b/Test/JK2782_JK2782_TGGCCGATCAACGA_L1_JK2782_TGGCCGATCAACGA_mapping_raw.flagstat @@ -0,0 +1,16 @@ +10184 + 0 in total (QC-passed reads + QC-failed reads) +10184 + 0 primary +0 + 0 secondary +0 + 0 supplementary +0 + 0 duplicates +0 + 0 primary duplicates +1246 + 0 mapped (12.23% : N/A) +1246 + 0 primary mapped (12.23% : N/A) +0 + 0 paired in sequencing +0 + 0 read1 +0 + 0 read2 +0 + 0 properly paired (N/A : N/A) +0 + 0 with itself and mate mapped +0 + 0 singletons (N/A : N/A) +0 + 0 with mate mapped to a different chr +0 + 0 with mate mapped to a different chr (mapQ>=5) diff --git a/Test/JK2782_JK2782_TGGCCGATCAACGA_L1_filtered.flagstat b/Test/JK2782_JK2782_TGGCCGATCAACGA_L1_filtered.flagstat new file mode 100644 index 0000000..b41769c --- /dev/null +++ b/Test/JK2782_JK2782_TGGCCGATCAACGA_L1_filtered.flagstat @@ -0,0 +1,16 @@ +1144 + 0 in total (QC-passed reads + QC-failed reads) +1144 + 0 primary +0 + 0 secondary +0 + 0 supplementary +0 + 0 duplicates +0 + 0 primary duplicates +1144 + 0 mapped (100.00% : N/A) +1144 + 0 primary mapped (100.00% : N/A) +0 + 0 paired in sequencing +0 + 0 read1 +0 + 0 read2 +0 + 0 properly paired (N/A : N/A) +0 + 0 with itself and mate mapped +0 + 0 singletons (N/A : N/A) +0 + 0 with mate mapped to a different chr +0 + 0 with mate mapped to a different chr (mapQ>=5)