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Wrong positions in result of tef.pl version 1.1 #2

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akiomiyao opened this issue Sep 13, 2023 · 6 comments
Open

Wrong positions in result of tef.pl version 1.1 #2

akiomiyao opened this issue Sep 13, 2023 · 6 comments

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@akiomiyao
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I found the problem in v1.1 for position data output. Please use v1.0 (Initial version), until the bug is fixed.
@akiomiyao
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akiomiyao commented Sep 18, 2023 •
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The bug has been fixed at v1.2. Please checkout v.1.2.

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akiomiyao commented Oct 5, 2023 •
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Information of TE direction on the reference genome is disappeared in v1.2. I will update the script to output same order of columns in v1.0.

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The direction of TE insertion in genotype data is recovered in v1.3.

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Sorting of count data is improved at bc9589f.

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The filter conditions introduced in version 1.2 for transposon end sequences detected with a one-base shift were too strong, and even normal transposon end sequences were sometimes excluded, so I plan to reconsider the conditions.

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akiomiyao commented Nov 16, 2023 •
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Lowered filter threshold

Please update to 7bb5c0c

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