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_offline_long.yml
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_offline_long.yml
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# This is the yml provided to bookdown::render_book() if the user wants to print only one or a few pages.
output_dir: "offline_long"
#book_filename: "hbk_files" # name of folder in output_dir
language:
ui:
chapter_name: ""
#new_session: yes # does not work with rmd_files option
after_chapter_script: "common.R"
delete_merged_file: FALSE
rmd_files: [
# INTRO & CONTRIBUTORS
"index.Rmd", # objectives, how to read, authors, acknowledgements
# ABOUT BOOK
"new_pages/cat_about_book.Rmd", # start of new section
"new_pages/editorial_style.Rmd", # editorial style
"new_pages/data_used.Rmd", # data used
# BASICS
"new_pages/cat_basics.Rmd", # start of new section
"new_pages/basics.Rmd",
"new_pages/transition_to_R.Rmd",
"new_pages/packages_suggested.Rmd",
"new_pages/r_projects.Rmd",
"new_pages/importing.Rmd",
# DATA MANGEMENT
"new_pages/cat_data_management.Rmd", # start of new section
"new_pages/cleaning.Rmd",
"new_pages/dates.Rmd",
"new_pages/characters_strings.Rmd",
"new_pages/factors.Rmd",
"new_pages/pivoting.Rmd",
"new_pages/grouping.Rmd",
"new_pages/joining_matching.Rmd",
"new_pages/deduplication.Rmd",
"new_pages/iteration.Rmd",
# ANALYSIS
"new_pages/cat_analysis.Rmd", # start of new section
"new_pages/tables_descriptive.Rmd",
"new_pages/stat_tests.Rmd",
"new_pages/regression.Rmd",
"new_pages/missing_data.Rmd",
"new_pages/standardization.Rmd",
"new_pages/moving_average.Rmd",
"new_pages/time_series.Rmd",
"new_pages/epidemic_models.Rmd",
"new_pages/contact_tracing.Rmd",
"new_pages/survey_analysis.Rmd",
"new_pages/survival_analysis.Rmd",
"new_pages/gis.Rmd",
# DATA VIZ
"new_pages/cat_data_viz.Rmd", # start of new section
"new_pages/tables_presentation.Rmd",
"new_pages/ggplot_basics.Rmd",
#"new_pages/plot_continuous.Rmd",
#"new_pages/plot_discrete.Rmd",
"new_pages/ggplot_tips.Rmd",
"new_pages/epicurves.Rmd",
"new_pages/age_pyramid.Rmd",
"new_pages/heatmaps.Rmd",
"new_pages/diagrams.Rmd",
"new_pages/combination_analysis.Rmd",
"new_pages/transmission_chains.Rmd",
"new_pages/phylogenetic_trees.Rmd",
"new_pages/interactive_plots.Rmd",
# REPORTS AND DASHBOARDS
"new_pages/cat_reports_dashboards.Rmd", # start of new section
"new_pages/rmarkdown.Rmd",
"new_pages/reportfactory.Rmd",
"new_pages/flexdashboard.Rmd",
"new_pages/shiny_basics.Rmd",
# MISCELLANEOUS
"new_pages/cat_misc.Rmd", # start of new section
"new_pages/writing_functions.Rmd",
"new_pages/directories.Rmd",
"new_pages/collaboration.Rmd",
"new_pages/errors.Rmd",
"new_pages/help.Rmd",
#"new_pages/relational_databases.Rmd",
"new_pages/network_drives.Rmd",
"new_pages/data_table.Rmd" #,
#"new_pages/rstudio_advanced.Rmd"
]
# OLD YAML FOR ARCHIVE
#
# title: |
# 
# author: "Version 1.0.0"
# date: "Produced `r format(Sys.time(), '%A %d %B %Y')`"
# output:s
# html_document:
# code_folding: show
# highlight: zenburn
# number_sections: no
# theme: sandstone
# toc: yes
# toc_collapse: no
# toc_depth: 3
# toc_float: yes
# params:
# run_page_ind: TRUE
#
#
# book_filename: "chapter"
# language:
# ui:
# chapter_name: ""
# output_dir: "docs"
# delete_merged_file: FALSE
# rmd_files: [
# "index.Rmd",
# "raw_pages/deduplication.Rmd",
#
# ]
#