minimal_Sage_standard.json

{
    "assay": [
        "RNAseq",
        "miRNAseq",
        "wholeGenomeSeq",
        "exomeSeq",
        "ChIPSeq",
        "arrayRNA",
        "arraySNP",
        "arrayMethylation",
        "arrayMiRNA",
        "arrayReveresePhaseProtein",
        "bisulfiteSeq",
        "ATACseq",
        "NOMeSeq",
        "HI-C",
        "errBisulfiteSeq",
        "IsoSeq",
        "MRI",
        "PET",
        "westernBlot",
        "drugViabilityAssay",
        "drugCombinationAssay"
    ],
    "dataType": [
        "genomicVariants",
        "image",
        "geneExpression",
        "proteomics",
        "kinomics",
        "drugScreen",
        "metadata",
        "epigenomics"
        
    ],
    "dataSubtype": [
        "dataMatrix",
        "raw",
        "processed",
        "metadata",
        "geneCounts",
        "imputed",
        "fpkm",
        "ChIPpeaks",
    ],
    "fileFormat": [
        "idx",
        "BAM",
        "BAI",
        "excel",
        "powerpoint",
        "TIF",
        "PNG",
        "doc",
        "PDF",
        "hdf",
        "FASTA",
        "FASTQ",
        "SAM",
        "VCF",
        "BCF",
        "MAF",
        "BED",
        "chp",
        "cel",
        "sif",
        "tsv",
        "csv",
        "txt",
        "plink",
        "idat",
        "bigwig",
        "wiggle",
        "gct"
    ],
    "species": [
        "Human",
        "Mouse",
        "Drosophila melanogaster"
    ],
    "disease": [
        "Neurofibromatosis 1",
        "Neurofibromatosis 2",
        "Bipolar Disorder",
        "Alzheimer Disease",
        "Schizophrenia",
        "Autism Spectrum Disorder",
        "Major Depressive Disorder",
        "Tourette Syndrome",
        "Affective Disorder",
        "Frontotemporal Dementia"'
        "Mild Cognitive Impairment"'
        "Parkinson Disease",
        "Control",
        "Progressive Supranuclear Palsy",
        "Amyotrophic Lateral Sclerosis"

    ],
    "tumorType": [
        "Neurofibroma",
        "Optic Nerve Glioma",
        "Glioma",
        "Astrocytoma",
        "Neurofibroma, Plexiform",
        "Malignant Peripheral Nerve Sheath Tumor"
    ],
    "cellType": [
        "B-lymphocytes",
        "iPSC",
        "GABAergic neurons",
        "monocytes",
        "microglia",
        "macrophages",
        "astrocytes",
        "NeUN+",
        "NeUN-",
        "CNON",
        "A549",
        "SH-SY5Y"
       
    ],
    "cellLine": [
        true,
        false
    ],
    "organ": [
        "skin",
        "nerves",
        "brain",
        "blood"
    ],
    "tissue": [
        "cerebral cortex",
        "frontal lobe",
        "hippocampus",
        "nerve tissue",
        "dorsolateral prefrontal cortex",
        "anterior cingulate cortex",
        "temporal cortex"
    ],
    "study": [
        "BLSA",
        "pnfCellCulture",
        "Synodos NF1",
        "Synodos NF2",
        "Synodos LGG",
        "DHART SPORE",
        "Dermal NF",
        "EpiMap",
        "MouseHAL",
        "WGBS Pilot",
        "lncRNA Pilot",
        "CNON",
        "BrainGVEX",
        "UCLA-ASD",
        "iPSC",
        "HumanFC",
        "EpiGABA",
        "NHP",
        "Yale-ASD",
        "BipSeq"
        
    ],
    "PI": [
        "name 1"
    ],
    "consortium": [
        "CMC",
        "PEC",
        "AMP-AD",
        "Synodos",
        "BSMN"
    ],
    "grant": [
        "U01MH103339",
        "U01MH103392",
        "U01MH103346", 
        "U01MH103340",
        "U01MH103365,
        "R01MH094714",
        "R21MH105881", 
        "R01MH105472", 
        "R21MH102791", 
        "R21MH103877",
        "R01MH105898",
        "P50MH106934"
    ],
    "dataContact": null,
    "fundingAgency": [
        "Children's Tumor Foundation",
        "National Cancer Institute",
        "NTAP",
        "National Institute of Aging"
    ]
}