neuro_Sage_standard.json

{
    "study": [
        "CMC",
        "EpiMap",
        "CNON",
        "MouseHAL",
        "WGBS Pilot",
        "lncRNA Pilot",
        "BrainGVEX",
        "UCLA-ASD",
        "iPSC",
        "HumanFC",
        "EpiGABA",
        "NHP",
        "Yale-ASD",
        "BipSeq"
        "ACT", 
        "BLSA", 
        "HBTRC", 
        "MSBB", 
        "ROSMAP", 
        "MayoLOADGwas", 
        "MayoEGWAS", 
        "MayoPilot", 
        "IL10", 
        "Emory", 
        "TAUAPPms", 
        "sampleSwap", 
        "MayoRNAseq", 
        "BroadMDMi", 
        "BroadiPSC", 
        "MSDM", 
        "OFMM", 
        "Lilly_microgliaRNAseq", 
        "UPenn", 
        "SY5Y_REST", 
        "MSSMiPSC", 
        "TyrobpKO", 
        "MSSMiPSCMicroglia", 
        "BroadAstrom109", 
        "Banner", 
        "EmoryDrosophilaTau"
    ],
    "grant": [
    	"U01MH103339",
    	"U01MH103392",
    	"U01MH103346",
    	"U01MH103340",
    	"U01MH103365",
    	"R01MH094714",
    	"R21MH105881",
    	"R01MH105472",
    	"R21MH102791",
    	"R21MH103877",
    	"R01MH105898",
    	"P50MH106934",
    	"U01AG046152",
    	"U01AG046170",
    	"U01AG046139",
    	"U01AG046161",
    	"5R01AG046174",
    	"R01AG046171"
    ],
    "group": [
        "MSSM",
        "Yale",
        "LIBD",
        "UCLA",
        "UIC-UChicago",
        "Duke",
        "UNC",
        "UCSF",
        "USC",
        "GIS",
        "JHU",
        "MSSM", 
        "Emory", 
        "Broad-Rush", 
        "UFL-Mayo-ISB", 
        "Myers-NIAGADS", 
        "Harvard-MIT", 
        "Duke"
    ],
    "lifeStage": [
        "adult",
        "fetal",
        "child",
        "unknown"      
    ],
    "sampleName": [
        
    ],
    "treatmentType": [
        "haloperidol",
        "placebo"
    ],
    "assayTarget": [
        "H3K9me3",
        "H3K4me3",
        "H3K4me1",
        "H3K27ac",
        "H3K36me3",
        "H3K27me3",
        "H3K9ac",
        "REST",
        "CTCF",
        "input"
    ],
    "modelSystemName": [  
        "TREM2", 
        "TYROBP", 
        "AB42",
        "CRND8", 
        "APPPS1", 
        "MAPT-P301K", 
        "rTg4510", 
        "APPE693Q", 
        "APPKM650", 
        "APPKM670", 
        "APPKM670-671NL-PSEN1deltaexon9", 
        "TYROBP_WT", 
        "TYROBP_WT.KO", 
        "TYROBP_KO.KO",
    ],
    "isModelSystem": [ 
        TRUE, 
        FALSE        
    ],
    "platform": [ 
        "HiSeq2500",
        "HiSeq2000",
        "MiSeq",
        "PsychChip",
        "Affy5.0",
        "Affy6.0",
        "PacBioRSII",
        "GAIIx",
        "Illumina_HumanOmni1-Quadv1.0",
        "Illumina_1M",
        "Illumina_h650",
        "Illumina_Omni2pt5M",
        "Illumina_Omni5M",
        "Perlegen300Karray", 
        "Agilent44Karray", 
        "IlluminaWholeGenomeDASL", 
        "IlluminaHumanHap300",
        "NanostringnCounter", 
        "LTQOrbitrapXL",  
        "IlluminaHumanMethylation450",
        "AffymetrixU133AB", 
        "AffymetrixU133Plus2", 
        "confocalImaging", 
        "IlluminaHumanHT-12_V3_0_R1", 
        "SequenomMultiplex" 
    ],
    "runType": [  
        "singleEnd", 
        "pairedEnd",
        "unknown"
    ],
    "readLength": [
       
    ],
    "libraryPrep": [ 
        "stranded",
        "unstranded",
        "rRNADepletion",
        "polyASelection",
        "lncRNAEnrichment",
        "totalRNA",
        "miRNA",
        "DNA"
    ]
}