DESCRIPTION

Package: samplepower
Type: Package
Title: Compute sensitivity and false positive rates for a variant call set with repsect to a truth dataset.
Version: 1.16.0
Depends: 
  R (>= 3.5),
  BiocGenerics,
  IRanges (>= 2.12.0),
  GenomicRanges (>= 1.28.4),
  VariantAnnotation, 
  dplyr
Author: Anna Quaglieri
Maintainer: Anna Quaglieri <quaglieri.a@wehi.edu.au>
Description: This package contains functions to use dowstream of a variant calling pipeline for RNA-Seq (https://github.com/annaquaglieri16/RNA-seq-variant-calling). The set of function are useful to parse the variants across VCF files obtained from several callers and evaluate sensitivity and false positive rates woth respect to a truth set.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
YEAR: 2018
Imports:
  S4Vectors (>= 0.17.41),
  dplyr,
  stringr,
  edgeR,
  data.table
RoxygenNote: 6.1.1
Suggests: 
    knitr,
    rmarkdown
VignetteBuilder: knitr