From cde001fc40d6cc90f715eac814883259d3726924 Mon Sep 17 00:00:00 2001 From: etowahadams Date: Wed, 13 Nov 2024 11:40:23 -0500 Subject: [PATCH] add environment variables --- docs/source/Installation.md | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/docs/source/Installation.md b/docs/source/Installation.md index 3d053f27..843aeb25 100644 --- a/docs/source/Installation.md +++ b/docs/source/Installation.md @@ -20,8 +20,10 @@ At this time, only Linux systems are supported. - Activate the environment, e.g `conda activate openfold_env` 1. Run the setup script to configure kernels and folding resources. > scripts/install_third_party_dependencies.sh` -1. Prepend the conda environment to the `$LD_LIBRARY_PATH`., e.g. - `export $LD_LIBRARY_PATH=$CONDA_PREFIX/lib:$LD_LIBRARY_PATH`. You may optionally set this as a conda environment variable according to the [conda docs](https://conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#saving-environment-variables) to activate each time the environment is used. +1. Prepend the conda environment to the `$LD_LIBRARY_PATH` and `$LIBRARY_PATH`. + > export LD_LIBRARY_PATH=$CONDA_PREFIX/lib:$LD_LIBRARY_PATH + > export LIBRARY_PATH=$CONDA_PREFIX/lib:$LIBRARY_PATH + - You may optionally set this as a conda environment variable according to the [conda docs](https://conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html#saving-environment-variables) to activate each time the environment is used. 1. Download parameters. We recommend using a destination as `openfold/resources` as our unittests will look for the weights there. - For AlphaFold2 weights, use > ./scripts/download_alphafold_params.sh