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run lumpy without speedseq #396

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RafigaM opened this issue May 7, 2024 · 0 comments
Open

run lumpy without speedseq #396

RafigaM opened this issue May 7, 2024 · 0 comments

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@RafigaM
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RafigaM commented May 7, 2024

Hi. I want to run lumpy on HPC cluster but do not have speedseq installed. How could I run lumpy with bam files I already have from bwa-mem alignment? Thank you in advance. Looking forward to the answering from you.
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@RafigaM