diff --git a/primer_schemes/nCoV-2019/V1/nCoV-2019.primers.fasta b/primer_schemes/nCoV-2019/V1/nCoV-2019.primers.fasta new file mode 100644 index 0000000..934d525 --- /dev/null +++ b/primer_schemes/nCoV-2019/V1/nCoV-2019.primers.fasta @@ -0,0 +1,392 @@ +>nCoV-2019_10_LEFT +TGAGAAGTGCTCTGCCTATACAGT +>nCoV-2019_10_RIGHT +TCATCTAACCAATCTTCTTCTTGCTCT +>nCoV-2019_11_LEFT +GGAATTTGGTGCCACTTCTGCT +>nCoV-2019_11_RIGHT +TCATCAGATTCAACTTGCATGGCA +>nCoV-2019_12_LEFT +AAACATGGAGGAGGTGTTGCAG +>nCoV-2019_12_RIGHT +TTCACTCTTCATTTCCAAAAAGCTTGA +>nCoV-2019_13_LEFT +TCGCACAAATGTCTACTTAGCTGT +>nCoV-2019_13_RIGHT +ACCACAGCAGTTAAAACACCCT +>nCoV-2019_14_LEFT +CATCCAGATTCTGCCACTCTTGT +>nCoV-2019_14_RIGHT +AGTTTCCACACAGACAGGCATT +>nCoV-2019_15_LEFT +ACAGTGCTTAAAAAGTGTAAAAGTGCC +>nCoV-2019_15_RIGHT +AACAGAAACTGTAGCTGGCACT +>nCoV-2019_16_LEFT +AATTTGGAAGAAGCTGCTCGGT +>nCoV-2019_16_RIGHT +CACAACTTGCGTGTGGAGGTTA +>nCoV-2019_17_LEFT +CTTCTTTCTTTGAGAGAAGTGAGGACT +>nCoV-2019_17_RIGHT +TTTGTTGGAGTGTTAACAATGCAGT +>nCoV-2019_18_LEFT +TGGAAATACCCACAAGTTAATGGTTTAAC +>nCoV-2019_18_RIGHT +AGCTTGTTTACCACACGTACAAGG +>nCoV-2019_19_LEFT +GCTGTTATGTACATGGGCACACT +>nCoV-2019_19_RIGHT +TGTCCAACTTAGGGTCAATTTCTGT +>nCoV-2019_1_LEFT +ACCAACCAACTTTCGATCTCTTGT +>nCoV-2019_1_RIGHT +CATCTTTAAGATGTTGACGTGCCTC +>nCoV-2019_20_LEFT +ACAAAGAAAACAGTTACACAACAACCA +>nCoV-2019_20_RIGHT +ACGTGGCTTTATTAGTTGCATTGTT +>nCoV-2019_21_LEFT +TGGCTATTGATTATAAACACTACACACCC +>nCoV-2019_21_RIGHT +TAGATCTGTGTGGCCAACCTCT +>nCoV-2019_22_LEFT +ACTACCGAAGTTGTAGGAGACATTATACT +>nCoV-2019_22_RIGHT +ACAGTATTCTTTGCTATAGTAGTCGGC +>nCoV-2019_23_LEFT +ACAACTACTAACATAGTTACACGGTGT +>nCoV-2019_23_RIGHT +ACCAGTACAGTAGGTTGCAATAGTG +>nCoV-2019_24_LEFT +AGGCATGCCTTCTTACTGTACTG +>nCoV-2019_24_RIGHT +ACATTCTAACCATAGCTGAAATCGGG +>nCoV-2019_25_LEFT +GCAATTGTTTTTCAGCTATTTTGCAGT +>nCoV-2019_25_RIGHT +ACTGTAGTGACAAGTCTCTCGCA +>nCoV-2019_26_LEFT +TTGTGATACATTCTGTGCTGGTAGT +>nCoV-2019_26_RIGHT +TCCGCACTATCACCAACATCAG +>nCoV-2019_27_LEFT +ACTACAGTCAGCTTATGTGTCAACC +>nCoV-2019_27_RIGHT +AATACAAGCACCAAGGTCACGG +>nCoV-2019_28_LEFT +ACATAGAAGTTACTGGCGATAGTTGT +>nCoV-2019_28_RIGHT +TGTTTAGACATGACATGAACAGGTGT +>nCoV-2019_29_LEFT +ACTTGTGTTCCTTTTTGTTGCTGC +>nCoV-2019_29_RIGHT +AGTGTACTCTATAAGTTTTGATGGTGTGT +>nCoV-2019_2_LEFT +CTGTTTTACAGGTTCGCGACGT +>nCoV-2019_2_RIGHT +TAAGGATCAGTGCCAAGCTCGT +>nCoV-2019_30_LEFT +GCACAACTAATGGTGACTTTTTGCA +>nCoV-2019_30_RIGHT +ACCACTAGTAGATACACAAACACCAG +>nCoV-2019_31_LEFT +TTCTGAGTACTGTAGGCACGGC +>nCoV-2019_31_RIGHT +ACAGAATAAACACCAGGTAAGAATGAGT +>nCoV-2019_32_LEFT +TGGTGAATACAGTCATGTAGTTGCC +>nCoV-2019_32_RIGHT +AGCACATCACTACGCAACTTTAGA +>nCoV-2019_33_LEFT +ACTTTTGAAGAAGCTGCGCTGT +>nCoV-2019_33_RIGHT +TGGACAGTAAACTACGTCATCAAGC +>nCoV-2019_34_LEFT +TCCCATCTGGTAAAGTTGAGGGT +>nCoV-2019_34_RIGHT +AGTGAAATTGGGCCTCATAGCA +>nCoV-2019_35_LEFT +TGTTCGCATTCAACCAGGACAG +>nCoV-2019_35_RIGHT +ACTTCATAGCCACAAGGTTAAAGTCA +>nCoV-2019_36_LEFT +TTAGCTTGGTTGTACGCTGCTG +>nCoV-2019_36_RIGHT +GAACAAAGACCATTGAGTACTCTGGA +>nCoV-2019_37_LEFT +ACACACCACTGGTTGTTACTCAC +>nCoV-2019_37_RIGHT +GTCCACACTCTCCTAGCACCAT +>nCoV-2019_38_LEFT +ACTGTGTTATGTATGCATCAGCTGT +>nCoV-2019_38_RIGHT +CACCAAGAGTCAGTCTAAAGTAGCG +>nCoV-2019_39_LEFT +AGTATTGCCCTATTTTCTTCATAACTGGT +>nCoV-2019_39_RIGHT +TGTAACTGGACACATTGAGCCC +>nCoV-2019_3_LEFT +CGGTAATAAAGGAGCTGGTGGC +>nCoV-2019_3_RIGHT +AAGGTGTCTGCAATTCATAGCTCT +>nCoV-2019_40_LEFT +TGCACATCAGTAGTCTTACTCTCAGT +>nCoV-2019_40_RIGHT +CATGGCTGCATCACGGTCAAAT +>nCoV-2019_41_LEFT +GTTCCCTTCCATCATATGCAGCT +>nCoV-2019_41_RIGHT +TGGTATGACAACCATTAGTTTGGCT +>nCoV-2019_42_LEFT +TGCAAGAGATGGTTGTGTTCCC +>nCoV-2019_42_RIGHT +CCTACCTCCCTTTGTTGTGTTGT +>nCoV-2019_43_LEFT +TACGACAGATGTCTTGTGCTGC +>nCoV-2019_43_RIGHT +AGCAGCATCTACAGCAAAAGCA +>nCoV-2019_44_LEFT +TGCCACAGTACGTCTACAAGCT +>nCoV-2019_44_RIGHT +AACCTTTCCACATACCGCAGAC +>nCoV-2019_45_LEFT +TACCTACAACTTGTGCTAATGACCC +>nCoV-2019_45_RIGHT +AAATTGTTTCTTCATGTTGGTAGTTAGAGA +>nCoV-2019_46_LEFT +TGTCGCTTCCAAGAAAAGGACG +>nCoV-2019_46_RIGHT +CACGTTCACCTAAGTTGGCGTA +>nCoV-2019_47_LEFT +AGGACTGGTATGATTTTGTAGAAAACCC +>nCoV-2019_47_RIGHT +AATAACGGTCAAAGAGTTTTAACCTCTC +>nCoV-2019_48_LEFT +TGTTGACACTGACTTAACAAAGCCT +>nCoV-2019_48_RIGHT +TAGATTACCAGAAGCAGCGTGC +>nCoV-2019_49_LEFT +AGGAATTACTTGTGTATGCTGCTGA +>nCoV-2019_49_RIGHT +TGACGATGACTTGGTTAGCATTAATACA +>nCoV-2019_4_LEFT +GGTGTATACTGCTGCCGTGAAC +>nCoV-2019_4_RIGHT +CACAAGTAGTGGCACCTTCTTTAGT +>nCoV-2019_50_LEFT +GTTGATAAGTACTTTGATTGTTACGATGGT +>nCoV-2019_50_RIGHT +TAACATGTTGTGCCAACCACCA +>nCoV-2019_51_LEFT +TCAATAGCCGCCACTAGAGGAG +>nCoV-2019_51_RIGHT +AGTGCATTAACATTGGCCGTGA +>nCoV-2019_52_LEFT +CATCAGGAGATGCCACAACTGC +>nCoV-2019_52_RIGHT +GTTGAGAGCAAAATTCATGAGGTCC +>nCoV-2019_53_LEFT +AGCAAAATGTTGGACTGAGACTGA +>nCoV-2019_53_RIGHT +AGCCTCATAAAACTCAGGTTCCC +>nCoV-2019_54_LEFT +TGAGTTAACAGGACACATGTTAGACA +>nCoV-2019_54_RIGHT +AACCAAAAACTTGTCCATTAGCACA +>nCoV-2019_55_LEFT +ACTCAACTTTACTTAGGAGGTATGAGCT +>nCoV-2019_55_RIGHT +GGTGTACTCTCCTATTTGTACTTTACTGT +>nCoV-2019_56_LEFT +ACCTAGACCACCACTTAACCGA +>nCoV-2019_56_RIGHT +ACACTATGCGAGCAGAAGGGTA +>nCoV-2019_57_LEFT +ATTCTACACTCCAGGGACCACC +>nCoV-2019_57_RIGHT +GTAATTGAGCAGGGTCGCCAAT +>nCoV-2019_58_LEFT +TGATTTGAGTGTTGTCAATGCCAGA +>nCoV-2019_58_RIGHT +CTTTTCTCCAAGCAGGGTTACGT +>nCoV-2019_59_LEFT +TCACGCATGATGTTTCATCTGCA +>nCoV-2019_59_RIGHT +AAGAGTCCTGTTACATTTTCAGCTTG +>nCoV-2019_5_LEFT +TGGTGAAACTTCATGGCAGACG +>nCoV-2019_5_RIGHT +ATTGATGTTGACTTTCTCTTTTTGGAGT +>nCoV-2019_60_LEFT +TGATAGAGACCTTTATGACAAGTTGCA +>nCoV-2019_60_RIGHT +GGTACCAACAGCTTCTCTAGTAGC +>nCoV-2019_61_LEFT +TGTTTATCACCCGCGAAGAAGC +>nCoV-2019_61_RIGHT +ATCACATAGACAACAGGTGCGC +>nCoV-2019_62_LEFT +GGCACATGGCTTTGAGTTGACA +>nCoV-2019_62_RIGHT +GTTGAACCTTTCTACAAGCCGC +>nCoV-2019_63_LEFT +TGTTAAGCGTGTTGACTGGACT +>nCoV-2019_63_RIGHT +ACAAACTGCCACCATCACAACC +>nCoV-2019_64_LEFT +TCGATAGATATCCTGCTAATTCCATTGT +>nCoV-2019_64_RIGHT +AGTCTTGTAAAAGTGTTCCAGAGGT +>nCoV-2019_65_LEFT +GCTGGCTTTAGCTTGTGGGTTT +>nCoV-2019_65_RIGHT +TGTCAGTCATAGAACAAACACCAATAGT +>nCoV-2019_66_LEFT +GGGTGTGGACATTGCTGCTAAT +>nCoV-2019_66_RIGHT +TCAATTTCCATTTGACTCCTGGGT +>nCoV-2019_67_LEFT +GTTGTCCAACAATTACCTGAAACTTACT +>nCoV-2019_67_RIGHT +CAACCTTAGAAACTACAGATAAATCTTGGG +>nCoV-2019_68_LEFT +ACAGGTTCATCTAAGTGTGTGTGT +>nCoV-2019_68_RIGHT +CTCCTTTATCAGAACCAGCACCA +>nCoV-2019_69_LEFT +TGTCGCAAAATATACTCAACTGTGTCA +>nCoV-2019_69_RIGHT +TCTTTATAGCCACGGAACCTCCA +>nCoV-2019_6_LEFT +GGTGTTGTTGGAGAAGGTTCCG +>nCoV-2019_6_RIGHT +TAGCGGCCTTCTGTAAAACACG +>nCoV-2019_70_LEFT +ACAAAAGAAAATGACTCTAAAGAGGGTTT +>nCoV-2019_70_RIGHT +TGACCTTCTTTTAAAGACATAACAGCAG +>nCoV-2019_71_LEFT +ACAAATCCAATTCAGTTGTCTTCCTATTC +>nCoV-2019_71_RIGHT +TGGAAAAGAAAGGTAAGAACAAGTCCT +>nCoV-2019_72_LEFT +ACACGTGGTGTTTATTACCCTGAC +>nCoV-2019_72_RIGHT +ACTCTGAACTCACTTTCCATCCAAC +>nCoV-2019_73_LEFT +CAATTTTGTAATGATCCATTTTTGGGTGT +>nCoV-2019_73_RIGHT +CACCAGCTGTCCAACCTGAAGA +>nCoV-2019_74_LEFT +ACATCACTAGGTTTCAAACTTTACTTGC +>nCoV-2019_74_RIGHT +GCAACACAGTTGCTGATTCTCTTC +>nCoV-2019_75_LEFT +AGAGTCCAACCAACAGAATCTATTGT +>nCoV-2019_75_RIGHT +ACCACCAACCTTAGAATCAAGATTGT +>nCoV-2019_76_LEFT +AGGGCAAACTGGAAAGATTGCT +>nCoV-2019_76_RIGHT +ACACCTGTGCCTGTTAAACCAT +>nCoV-2019_77_LEFT +CCAGCAACTGTTTGTGGACCTA +>nCoV-2019_77_RIGHT +CAGCCCCTATTAAACAGCCTGC +>nCoV-2019_78_LEFT +CAACTTACTCCTACTTGGCGTGT +>nCoV-2019_78_RIGHT +TGTGTACAAAAACTGCCATATTGCA +>nCoV-2019_79_LEFT +GTGGTGATTCAACTGAATGCAGC +>nCoV-2019_79_RIGHT +CATTTCATCTGTGAGCAAAGGTGG +>nCoV-2019_7_LEFT +ATCAGAGGCTGCTCGTGTTGTA +>nCoV-2019_7_RIGHT +TGCACAGGTGACAATTTGTCCA +>nCoV-2019_80_LEFT +TTGCCTTGGTGATATTGCTGCT +>nCoV-2019_80_RIGHT +TGGAGCTAAGTTGTTTAACAAGCG +>nCoV-2019_81_LEFT +GCACTTGGAAAACTTCAAGATGTGG +>nCoV-2019_81_RIGHT +GTGAAGTTCTTTTCTTGTGCAGGG +>nCoV-2019_82_LEFT +GGGCTATCATCTTATGTCCTTCCCT +>nCoV-2019_82_RIGHT +TGCCAGAGATGTCACCTAAATCAA +>nCoV-2019_83_LEFT +TCCTTTGCAACCTGAATTAGACTCA +>nCoV-2019_83_RIGHT +TTTGACTCCTTTGAGCACTGGC +>nCoV-2019_84_LEFT +TGCTGTAGTTGTCTCAAGGGCT +>nCoV-2019_84_RIGHT +AGGTGTGAGTAAACTGTTACAAACAAC +>nCoV-2019_85_LEFT +ACTAGCACTCTCCAAGGGTGTT +>nCoV-2019_85_RIGHT +ACACAGTCTTTTACTCCAGATTCCC +>nCoV-2019_86_LEFT +TCAGGTGATGGCACAACAAGTC +>nCoV-2019_86_RIGHT +ACGAAAGCAAGAAAAAGAAGTACGC +>nCoV-2019_87_LEFT +CGACTACTAGCGTGCCTTTGTA +>nCoV-2019_87_RIGHT +ACTAGGTTCCATTGTTCAAGGAGC +>nCoV-2019_88_LEFT +CCATGGCAGATTCCAACGGTAC +>nCoV-2019_88_RIGHT +TGGTCAGAATAGTGCCATGGAGT +>nCoV-2019_89_LEFT +GTACGCGTTCCATGTGGTCATT +>nCoV-2019_89_RIGHT +ACCTGAAAGTCAACGAGATGAAACA +>nCoV-2019_8_LEFT +AGAGTTTCTTAGAGACGGTTGGGA +>nCoV-2019_8_RIGHT +GCTTCAACAGCTTCACTAGTAGGT +>nCoV-2019_90_LEFT +ACACAGACCATTCCAGTAGCAGT +>nCoV-2019_90_RIGHT +TGAAATGGTGAATTGCCCTCGT +>nCoV-2019_91_LEFT +TCACTACCAAGAGTGTGTTAGAGGT +>nCoV-2019_91_RIGHT +TTCAAGTGAGAACCAAAAGATAATAAGCA +>nCoV-2019_92_LEFT +TTTGTGCTTTTTAGCCTTTCTGCT +>nCoV-2019_92_RIGHT +AGGTTCCTGGCAATTAATTGTAAAAGG +>nCoV-2019_93_LEFT +TGAGGCTGGTTCTAAATCACCCA +>nCoV-2019_93_RIGHT +AGGTCTTCCTTGCCATGTTGAG +>nCoV-2019_94_LEFT +GGCCCCAAGGTTTACCCAATAA +>nCoV-2019_94_RIGHT +TTTGGCAATGTTGTTCCTTGAGG +>nCoV-2019_95_LEFT +TGAGGGAGCCTTGAATACACCA +>nCoV-2019_95_RIGHT +CAGTACGTTTTTGCCGAGGCTT +>nCoV-2019_96_LEFT +GCCAACAACAACAAGGCCAAAC +>nCoV-2019_96_RIGHT +TAGGCTCTGTTGGTGGGAATGT +>nCoV-2019_97_LEFT +TGGATGACAAAGATCCAAATTTCAAAGA +>nCoV-2019_97_RIGHT +ACACACTGATTAAAGATTGCTATGTGAG +>nCoV-2019_98_LEFT +AACAATTGCAACAATCCATGAGCA +>nCoV-2019_98_RIGHT +TTCTCCTAAGAAGCTATTAAAATCACATGG +>nCoV-2019_9_LEFT +TCCCACAGAAGTGTTAACAGAGGA +>nCoV-2019_9_RIGHT +ATGACAGCATCTGCCACAACAC diff --git a/primer_schemes/nCoV-2019/V1/pair_information.tsv b/primer_schemes/nCoV-2019/V1/pair_information.tsv new file mode 100644 index 0000000..5714e26 --- /dev/null +++ b/primer_schemes/nCoV-2019/V1/pair_information.tsv @@ -0,0 +1,98 @@ +nCoV-2019_1_LEFT nCoV-2019_1_RIGHT +nCoV-2019_2_LEFT nCoV-2019_2_RIGHT +nCoV-2019_3_LEFT nCoV-2019_3_RIGHT +nCoV-2019_4_LEFT nCoV-2019_4_RIGHT +nCoV-2019_5_LEFT nCoV-2019_5_RIGHT +nCoV-2019_6_LEFT nCoV-2019_6_RIGHT +nCoV-2019_7_LEFT nCoV-2019_7_RIGHT +nCoV-2019_8_LEFT nCoV-2019_8_RIGHT +nCoV-2019_9_LEFT nCoV-2019_9_RIGHT +nCoV-2019_10_LEFT nCoV-2019_10_RIGHT +nCoV-2019_11_LEFT nCoV-2019_11_RIGHT +nCoV-2019_12_LEFT nCoV-2019_12_RIGHT +nCoV-2019_13_LEFT nCoV-2019_13_RIGHT +nCoV-2019_14_LEFT nCoV-2019_14_RIGHT +nCoV-2019_15_LEFT nCoV-2019_15_RIGHT +nCoV-2019_16_LEFT nCoV-2019_16_RIGHT +nCoV-2019_17_LEFT nCoV-2019_17_RIGHT +nCoV-2019_18_LEFT nCoV-2019_18_RIGHT +nCoV-2019_19_LEFT nCoV-2019_19_RIGHT +nCoV-2019_20_LEFT nCoV-2019_20_RIGHT +nCoV-2019_21_LEFT nCoV-2019_21_RIGHT +nCoV-2019_22_LEFT nCoV-2019_22_RIGHT +nCoV-2019_23_LEFT nCoV-2019_23_RIGHT +nCoV-2019_24_LEFT nCoV-2019_24_RIGHT +nCoV-2019_25_LEFT nCoV-2019_25_RIGHT +nCoV-2019_26_LEFT nCoV-2019_26_RIGHT +nCoV-2019_27_LEFT nCoV-2019_27_RIGHT +nCoV-2019_28_LEFT nCoV-2019_28_RIGHT +nCoV-2019_29_LEFT nCoV-2019_29_RIGHT +nCoV-2019_30_LEFT nCoV-2019_30_RIGHT +nCoV-2019_31_LEFT nCoV-2019_31_RIGHT +nCoV-2019_32_LEFT nCoV-2019_32_RIGHT +nCoV-2019_33_LEFT nCoV-2019_33_RIGHT +nCoV-2019_34_LEFT nCoV-2019_34_RIGHT +nCoV-2019_35_LEFT nCoV-2019_35_RIGHT +nCoV-2019_36_LEFT nCoV-2019_36_RIGHT +nCoV-2019_37_LEFT nCoV-2019_37_RIGHT +nCoV-2019_38_LEFT nCoV-2019_38_RIGHT +nCoV-2019_39_LEFT nCoV-2019_39_RIGHT +nCoV-2019_40_LEFT nCoV-2019_40_RIGHT +nCoV-2019_41_LEFT nCoV-2019_41_RIGHT +nCoV-2019_42_LEFT nCoV-2019_42_RIGHT +nCoV-2019_43_LEFT nCoV-2019_43_RIGHT +nCoV-2019_44_LEFT nCoV-2019_44_RIGHT +nCoV-2019_45_LEFT nCoV-2019_45_RIGHT +nCoV-2019_46_LEFT nCoV-2019_46_RIGHT +nCoV-2019_47_LEFT nCoV-2019_47_RIGHT +nCoV-2019_48_LEFT nCoV-2019_48_RIGHT +nCoV-2019_49_LEFT nCoV-2019_49_RIGHT +nCoV-2019_50_LEFT nCoV-2019_50_RIGHT +nCoV-2019_51_LEFT nCoV-2019_51_RIGHT +nCoV-2019_52_LEFT nCoV-2019_52_RIGHT +nCoV-2019_53_LEFT nCoV-2019_53_RIGHT +nCoV-2019_54_LEFT nCoV-2019_54_RIGHT +nCoV-2019_55_LEFT nCoV-2019_55_RIGHT +nCoV-2019_56_LEFT nCoV-2019_56_RIGHT +nCoV-2019_57_LEFT nCoV-2019_57_RIGHT +nCoV-2019_58_LEFT nCoV-2019_58_RIGHT +nCoV-2019_59_LEFT nCoV-2019_59_RIGHT +nCoV-2019_60_LEFT nCoV-2019_60_RIGHT +nCoV-2019_61_LEFT nCoV-2019_61_RIGHT +nCoV-2019_62_LEFT nCoV-2019_62_RIGHT +nCoV-2019_63_LEFT nCoV-2019_63_RIGHT +nCoV-2019_64_LEFT nCoV-2019_64_RIGHT +nCoV-2019_65_LEFT nCoV-2019_65_RIGHT +nCoV-2019_66_LEFT nCoV-2019_66_RIGHT +nCoV-2019_67_LEFT nCoV-2019_67_RIGHT +nCoV-2019_68_LEFT nCoV-2019_68_RIGHT +nCoV-2019_69_LEFT nCoV-2019_69_RIGHT +nCoV-2019_70_LEFT nCoV-2019_70_RIGHT +nCoV-2019_71_LEFT nCoV-2019_71_RIGHT +nCoV-2019_72_LEFT nCoV-2019_72_RIGHT +nCoV-2019_73_LEFT nCoV-2019_73_RIGHT +nCoV-2019_74_LEFT nCoV-2019_74_RIGHT +nCoV-2019_75_LEFT nCoV-2019_75_RIGHT +nCoV-2019_76_LEFT nCoV-2019_76_RIGHT +nCoV-2019_77_LEFT nCoV-2019_77_RIGHT +nCoV-2019_78_LEFT nCoV-2019_78_RIGHT +nCoV-2019_79_LEFT nCoV-2019_79_RIGHT +nCoV-2019_80_LEFT nCoV-2019_80_RIGHT +nCoV-2019_81_LEFT nCoV-2019_81_RIGHT +nCoV-2019_82_LEFT nCoV-2019_82_RIGHT +nCoV-2019_83_LEFT nCoV-2019_83_RIGHT +nCoV-2019_84_LEFT nCoV-2019_84_RIGHT +nCoV-2019_85_LEFT nCoV-2019_85_RIGHT +nCoV-2019_86_LEFT nCoV-2019_86_RIGHT +nCoV-2019_87_LEFT nCoV-2019_87_RIGHT +nCoV-2019_88_LEFT nCoV-2019_88_RIGHT +nCoV-2019_89_LEFT nCoV-2019_89_RIGHT +nCoV-2019_90_LEFT nCoV-2019_90_RIGHT +nCoV-2019_91_LEFT nCoV-2019_91_RIGHT +nCoV-2019_92_LEFT nCoV-2019_92_RIGHT +nCoV-2019_93_LEFT nCoV-2019_93_RIGHT +nCoV-2019_94_LEFT nCoV-2019_94_RIGHT +nCoV-2019_95_LEFT nCoV-2019_95_RIGHT +nCoV-2019_96_LEFT nCoV-2019_96_RIGHT +nCoV-2019_97_LEFT nCoV-2019_97_RIGHT +nCoV-2019_98_LEFT nCoV-2019_98_RIGHT diff --git a/primer_schemes/nCoV-2019/V2/nCoV-2019.primers.fasta b/primer_schemes/nCoV-2019/V2/nCoV-2019.primers.fasta new file mode 100644 index 0000000..9a80a9c --- /dev/null +++ b/primer_schemes/nCoV-2019/V2/nCoV-2019.primers.fasta @@ -0,0 +1,392 @@ +>nCoV-2019_10_LEFT +TGAGAAGTGCTCTGCCTATACAGT +>nCoV-2019_10_RIGHT +TCATCTAACCAATCTTCTTCTTGCTCT +>nCoV-2019_11_LEFT +GGAATTTGGTGCCACTTCTGCT +>nCoV-2019_11_RIGHT +TCATCAGATTCAACTTGCATGGCA +>nCoV-2019_12_LEFT +AAACATGGAGGAGGTGTTGCAG +>nCoV-2019_12_RIGHT +TTCACTCTTCATTTCCAAAAAGCTTGA +>nCoV-2019_13_LEFT +TCGCACAAATGTCTACTTAGCTGT +>nCoV-2019_13_RIGHT +ACCACAGCAGTTAAAACACCCT +>nCoV-2019_14_LEFT +CATCCAGATTCTGCCACTCTTGT +>nCoV-2019_14_RIGHT +AGTTTCCACACAGACAGGCATT +>nCoV-2019_15_LEFT +ACAGTGCTTAAAAAGTGTAAAAGTGCC +>nCoV-2019_15_RIGHT +AACAGAAACTGTAGCTGGCACT +>nCoV-2019_16_LEFT +AATTTGGAAGAAGCTGCTCGGT +>nCoV-2019_16_RIGHT +CACAACTTGCGTGTGGAGGTTA +>nCoV-2019_17_LEFT +CTTCTTTCTTTGAGAGAAGTGAGGACT +>nCoV-2019_17_RIGHT +TTTGTTGGAGTGTTAACAATGCAGT +>nCoV-2019_18_LEFT_alt2 +ACTTCTATTAAATGGGCAGATAACAACTGT +>nCoV-2019_18_RIGHT +AGCTTGTTTACCACACGTACAAGG +>nCoV-2019_19_LEFT +GCTGTTATGTACATGGGCACACT +>nCoV-2019_19_RIGHT +TGTCCAACTTAGGGTCAATTTCTGT +>nCoV-2019_1_LEFT +ACCAACCAACTTTCGATCTCTTGT +>nCoV-2019_1_RIGHT +CATCTTTAAGATGTTGACGTGCCTC +>nCoV-2019_20_LEFT +ACAAAGAAAACAGTTACACAACAACCA +>nCoV-2019_20_RIGHT +ACGTGGCTTTATTAGTTGCATTGTT +>nCoV-2019_21_LEFT +TGGCTATTGATTATAAACACTACACACCC +>nCoV-2019_21_RIGHT +TAGATCTGTGTGGCCAACCTCT +>nCoV-2019_22_LEFT +ACTACCGAAGTTGTAGGAGACATTATACT +>nCoV-2019_22_RIGHT +ACAGTATTCTTTGCTATAGTAGTCGGC +>nCoV-2019_23_LEFT +ACAACTACTAACATAGTTACACGGTGT +>nCoV-2019_23_RIGHT +ACCAGTACAGTAGGTTGCAATAGTG +>nCoV-2019_24_LEFT +AGGCATGCCTTCTTACTGTACTG +>nCoV-2019_24_RIGHT +ACATTCTAACCATAGCTGAAATCGGG +>nCoV-2019_25_LEFT +GCAATTGTTTTTCAGCTATTTTGCAGT +>nCoV-2019_25_RIGHT +ACTGTAGTGACAAGTCTCTCGCA +>nCoV-2019_26_LEFT +TTGTGATACATTCTGTGCTGGTAGT +>nCoV-2019_26_RIGHT +TCCGCACTATCACCAACATCAG +>nCoV-2019_27_LEFT +ACTACAGTCAGCTTATGTGTCAACC +>nCoV-2019_27_RIGHT +AATACAAGCACCAAGGTCACGG +>nCoV-2019_28_LEFT +ACATAGAAGTTACTGGCGATAGTTGT +>nCoV-2019_28_RIGHT +TGTTTAGACATGACATGAACAGGTGT +>nCoV-2019_29_LEFT +ACTTGTGTTCCTTTTTGTTGCTGC +>nCoV-2019_29_RIGHT +AGTGTACTCTATAAGTTTTGATGGTGTGT +>nCoV-2019_2_LEFT +CTGTTTTACAGGTTCGCGACGT +>nCoV-2019_2_RIGHT +TAAGGATCAGTGCCAAGCTCGT +>nCoV-2019_30_LEFT +GCACAACTAATGGTGACTTTTTGCA +>nCoV-2019_30_RIGHT +ACCACTAGTAGATACACAAACACCAG +>nCoV-2019_31_LEFT +TTCTGAGTACTGTAGGCACGGC +>nCoV-2019_31_RIGHT +ACAGAATAAACACCAGGTAAGAATGAGT +>nCoV-2019_32_LEFT +TGGTGAATACAGTCATGTAGTTGCC +>nCoV-2019_32_RIGHT +AGCACATCACTACGCAACTTTAGA +>nCoV-2019_33_LEFT +ACTTTTGAAGAAGCTGCGCTGT +>nCoV-2019_33_RIGHT +TGGACAGTAAACTACGTCATCAAGC +>nCoV-2019_34_LEFT +TCCCATCTGGTAAAGTTGAGGGT +>nCoV-2019_34_RIGHT +AGTGAAATTGGGCCTCATAGCA +>nCoV-2019_35_LEFT +TGTTCGCATTCAACCAGGACAG +>nCoV-2019_35_RIGHT +ACTTCATAGCCACAAGGTTAAAGTCA +>nCoV-2019_36_LEFT +TTAGCTTGGTTGTACGCTGCTG +>nCoV-2019_36_RIGHT +GAACAAAGACCATTGAGTACTCTGGA +>nCoV-2019_37_LEFT +ACACACCACTGGTTGTTACTCAC +>nCoV-2019_37_RIGHT +GTCCACACTCTCCTAGCACCAT +>nCoV-2019_38_LEFT +ACTGTGTTATGTATGCATCAGCTGT +>nCoV-2019_38_RIGHT +CACCAAGAGTCAGTCTAAAGTAGCG +>nCoV-2019_39_LEFT +AGTATTGCCCTATTTTCTTCATAACTGGT +>nCoV-2019_39_RIGHT +TGTAACTGGACACATTGAGCCC +>nCoV-2019_3_LEFT +CGGTAATAAAGGAGCTGGTGGC +>nCoV-2019_3_RIGHT +AAGGTGTCTGCAATTCATAGCTCT +>nCoV-2019_40_LEFT +TGCACATCAGTAGTCTTACTCTCAGT +>nCoV-2019_40_RIGHT +CATGGCTGCATCACGGTCAAAT +>nCoV-2019_41_LEFT +GTTCCCTTCCATCATATGCAGCT +>nCoV-2019_41_RIGHT +TGGTATGACAACCATTAGTTTGGCT +>nCoV-2019_42_LEFT +TGCAAGAGATGGTTGTGTTCCC +>nCoV-2019_42_RIGHT +CCTACCTCCCTTTGTTGTGTTGT +>nCoV-2019_43_LEFT +TACGACAGATGTCTTGTGCTGC +>nCoV-2019_43_RIGHT +AGCAGCATCTACAGCAAAAGCA +>nCoV-2019_44_LEFT +TGCCACAGTACGTCTACAAGCT +>nCoV-2019_44_RIGHT +AACCTTTCCACATACCGCAGAC +>nCoV-2019_45_LEFT +TACCTACAACTTGTGCTAATGACCC +>nCoV-2019_45_RIGHT +AAATTGTTTCTTCATGTTGGTAGTTAGAGA +>nCoV-2019_46_LEFT +TGTCGCTTCCAAGAAAAGGACG +>nCoV-2019_46_RIGHT +CACGTTCACCTAAGTTGGCGTA +>nCoV-2019_47_LEFT +AGGACTGGTATGATTTTGTAGAAAACCC +>nCoV-2019_47_RIGHT +AATAACGGTCAAAGAGTTTTAACCTCTC +>nCoV-2019_48_LEFT +TGTTGACACTGACTTAACAAAGCCT +>nCoV-2019_48_RIGHT +TAGATTACCAGAAGCAGCGTGC +>nCoV-2019_49_LEFT +AGGAATTACTTGTGTATGCTGCTGA +>nCoV-2019_49_RIGHT +TGACGATGACTTGGTTAGCATTAATACA +>nCoV-2019_4_LEFT +GGTGTATACTGCTGCCGTGAAC +>nCoV-2019_4_RIGHT +CACAAGTAGTGGCACCTTCTTTAGT +>nCoV-2019_50_LEFT +GTTGATAAGTACTTTGATTGTTACGATGGT +>nCoV-2019_50_RIGHT 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+TGATAGAGACCTTTATGACAAGTTGCA +>nCoV-2019_60_RIGHT +GGTACCAACAGCTTCTCTAGTAGC +>nCoV-2019_61_LEFT +TGTTTATCACCCGCGAAGAAGC +>nCoV-2019_61_RIGHT +ATCACATAGACAACAGGTGCGC +>nCoV-2019_62_LEFT +GGCACATGGCTTTGAGTTGACA +>nCoV-2019_62_RIGHT +GTTGAACCTTTCTACAAGCCGC +>nCoV-2019_63_LEFT +TGTTAAGCGTGTTGACTGGACT +>nCoV-2019_63_RIGHT +ACAAACTGCCACCATCACAACC +>nCoV-2019_64_LEFT +TCGATAGATATCCTGCTAATTCCATTGT +>nCoV-2019_64_RIGHT +AGTCTTGTAAAAGTGTTCCAGAGGT +>nCoV-2019_65_LEFT +GCTGGCTTTAGCTTGTGGGTTT +>nCoV-2019_65_RIGHT +TGTCAGTCATAGAACAAACACCAATAGT +>nCoV-2019_66_LEFT +GGGTGTGGACATTGCTGCTAAT +>nCoV-2019_66_RIGHT +TCAATTTCCATTTGACTCCTGGGT +>nCoV-2019_67_LEFT +GTTGTCCAACAATTACCTGAAACTTACT +>nCoV-2019_67_RIGHT +CAACCTTAGAAACTACAGATAAATCTTGGG +>nCoV-2019_68_LEFT +ACAGGTTCATCTAAGTGTGTGTGT +>nCoV-2019_68_RIGHT +CTCCTTTATCAGAACCAGCACCA +>nCoV-2019_69_LEFT +TGTCGCAAAATATACTCAACTGTGTCA +>nCoV-2019_69_RIGHT +TCTTTATAGCCACGGAACCTCCA +>nCoV-2019_6_LEFT +GGTGTTGTTGGAGAAGGTTCCG +>nCoV-2019_6_RIGHT +TAGCGGCCTTCTGTAAAACACG +>nCoV-2019_70_LEFT +ACAAAAGAAAATGACTCTAAAGAGGGTTT +>nCoV-2019_70_RIGHT +TGACCTTCTTTTAAAGACATAACAGCAG +>nCoV-2019_71_LEFT +ACAAATCCAATTCAGTTGTCTTCCTATTC +>nCoV-2019_71_RIGHT +TGGAAAAGAAAGGTAAGAACAAGTCCT +>nCoV-2019_72_LEFT +ACACGTGGTGTTTATTACCCTGAC +>nCoV-2019_72_RIGHT +ACTCTGAACTCACTTTCCATCCAAC +>nCoV-2019_73_LEFT +CAATTTTGTAATGATCCATTTTTGGGTGT +>nCoV-2019_73_RIGHT +CACCAGCTGTCCAACCTGAAGA +>nCoV-2019_74_LEFT +ACATCACTAGGTTTCAAACTTTACTTGC +>nCoV-2019_74_RIGHT +GCAACACAGTTGCTGATTCTCTTC +>nCoV-2019_75_LEFT +AGAGTCCAACCAACAGAATCTATTGT +>nCoV-2019_75_RIGHT +ACCACCAACCTTAGAATCAAGATTGT +>nCoV-2019_76_LEFT +AGGGCAAACTGGAAAGATTGCT +>nCoV-2019_76_RIGHT +ACACCTGTGCCTGTTAAACCAT +>nCoV-2019_77_LEFT +CCAGCAACTGTTTGTGGACCTA +>nCoV-2019_77_RIGHT +CAGCCCCTATTAAACAGCCTGC +>nCoV-2019_78_LEFT +CAACTTACTCCTACTTGGCGTGT +>nCoV-2019_78_RIGHT +TGTGTACAAAAACTGCCATATTGCA +>nCoV-2019_79_LEFT +GTGGTGATTCAACTGAATGCAGC +>nCoV-2019_79_RIGHT +CATTTCATCTGTGAGCAAAGGTGG +>nCoV-2019_7_LEFT +ATCAGAGGCTGCTCGTGTTGTA +>nCoV-2019_7_RIGHT +TGCACAGGTGACAATTTGTCCA +>nCoV-2019_80_LEFT +TTGCCTTGGTGATATTGCTGCT +>nCoV-2019_80_RIGHT +TGGAGCTAAGTTGTTTAACAAGCG +>nCoV-2019_81_LEFT +GCACTTGGAAAACTTCAAGATGTGG +>nCoV-2019_81_RIGHT +GTGAAGTTCTTTTCTTGTGCAGGG +>nCoV-2019_82_LEFT +GGGCTATCATCTTATGTCCTTCCCT +>nCoV-2019_82_RIGHT +TGCCAGAGATGTCACCTAAATCAA +>nCoV-2019_83_LEFT +TCCTTTGCAACCTGAATTAGACTCA +>nCoV-2019_83_RIGHT +TTTGACTCCTTTGAGCACTGGC +>nCoV-2019_84_LEFT +TGCTGTAGTTGTCTCAAGGGCT +>nCoV-2019_84_RIGHT +AGGTGTGAGTAAACTGTTACAAACAAC +>nCoV-2019_85_LEFT +ACTAGCACTCTCCAAGGGTGTT +>nCoV-2019_85_RIGHT +ACACAGTCTTTTACTCCAGATTCCC +>nCoV-2019_86_LEFT +TCAGGTGATGGCACAACAAGTC +>nCoV-2019_86_RIGHT +ACGAAAGCAAGAAAAAGAAGTACGC +>nCoV-2019_87_LEFT +CGACTACTAGCGTGCCTTTGTA +>nCoV-2019_87_RIGHT +ACTAGGTTCCATTGTTCAAGGAGC +>nCoV-2019_88_LEFT +CCATGGCAGATTCCAACGGTAC +>nCoV-2019_88_RIGHT +TGGTCAGAATAGTGCCATGGAGT +>nCoV-2019_89_LEFT +GTACGCGTTCCATGTGGTCATT +>nCoV-2019_89_RIGHT +ACCTGAAAGTCAACGAGATGAAACA +>nCoV-2019_8_LEFT +AGAGTTTCTTAGAGACGGTTGGGA +>nCoV-2019_8_RIGHT +GCTTCAACAGCTTCACTAGTAGGT +>nCoV-2019_90_LEFT +ACACAGACCATTCCAGTAGCAGT +>nCoV-2019_90_RIGHT +TGAAATGGTGAATTGCCCTCGT +>nCoV-2019_91_LEFT +TCACTACCAAGAGTGTGTTAGAGGT +>nCoV-2019_91_RIGHT +TTCAAGTGAGAACCAAAAGATAATAAGCA +>nCoV-2019_92_LEFT +TTTGTGCTTTTTAGCCTTTCTGCT +>nCoV-2019_92_RIGHT +AGGTTCCTGGCAATTAATTGTAAAAGG +>nCoV-2019_93_LEFT +TGAGGCTGGTTCTAAATCACCCA +>nCoV-2019_93_RIGHT +AGGTCTTCCTTGCCATGTTGAG +>nCoV-2019_94_LEFT +GGCCCCAAGGTTTACCCAATAA +>nCoV-2019_94_RIGHT +TTTGGCAATGTTGTTCCTTGAGG +>nCoV-2019_95_LEFT +TGAGGGAGCCTTGAATACACCA +>nCoV-2019_95_RIGHT +CAGTACGTTTTTGCCGAGGCTT +>nCoV-2019_96_LEFT +GCCAACAACAACAAGGCCAAAC +>nCoV-2019_96_RIGHT +TAGGCTCTGTTGGTGGGAATGT +>nCoV-2019_97_LEFT +TGGATGACAAAGATCCAAATTTCAAAGA +>nCoV-2019_97_RIGHT +ACACACTGATTAAAGATTGCTATGTGAG +>nCoV-2019_98_LEFT +AACAATTGCAACAATCCATGAGCA +>nCoV-2019_98_RIGHT +TTCTCCTAAGAAGCTATTAAAATCACATGG +>nCoV-2019_9_LEFT +TCCCACAGAAGTGTTAACAGAGGA +>nCoV-2019_9_RIGHT +ATGACAGCATCTGCCACAACAC diff --git a/primer_schemes/nCoV-2019/V2/pair_information.tsv b/primer_schemes/nCoV-2019/V2/pair_information.tsv new file mode 100644 index 0000000..ddd582a --- /dev/null +++ b/primer_schemes/nCoV-2019/V2/pair_information.tsv @@ -0,0 +1,98 @@ +nCoV-2019_1_LEFT nCoV-2019_1_RIGHT +nCoV-2019_2_LEFT nCoV-2019_2_RIGHT +nCoV-2019_3_LEFT nCoV-2019_3_RIGHT +nCoV-2019_4_LEFT nCoV-2019_4_RIGHT +nCoV-2019_5_LEFT nCoV-2019_5_RIGHT +nCoV-2019_6_LEFT nCoV-2019_6_RIGHT +nCoV-2019_7_LEFT nCoV-2019_7_RIGHT +nCoV-2019_8_LEFT nCoV-2019_8_RIGHT +nCoV-2019_9_LEFT nCoV-2019_9_RIGHT +nCoV-2019_10_LEFT nCoV-2019_10_RIGHT +nCoV-2019_11_LEFT nCoV-2019_11_RIGHT +nCoV-2019_12_LEFT nCoV-2019_12_RIGHT +nCoV-2019_13_LEFT nCoV-2019_13_RIGHT +nCoV-2019_14_LEFT nCoV-2019_14_RIGHT +nCoV-2019_15_LEFT nCoV-2019_15_RIGHT +nCoV-2019_16_LEFT nCoV-2019_16_RIGHT +nCoV-2019_17_LEFT nCoV-2019_17_RIGHT +nCoV-2019_18_LEFT_alt2 nCoV-2019_18_RIGHT +nCoV-2019_19_LEFT nCoV-2019_19_RIGHT +nCoV-2019_20_LEFT nCoV-2019_20_RIGHT +nCoV-2019_21_LEFT nCoV-2019_21_RIGHT +nCoV-2019_22_LEFT nCoV-2019_22_RIGHT +nCoV-2019_23_LEFT nCoV-2019_23_RIGHT +nCoV-2019_24_LEFT nCoV-2019_24_RIGHT +nCoV-2019_25_LEFT nCoV-2019_25_RIGHT +nCoV-2019_26_LEFT nCoV-2019_26_RIGHT +nCoV-2019_27_LEFT nCoV-2019_27_RIGHT +nCoV-2019_28_LEFT nCoV-2019_28_RIGHT +nCoV-2019_29_LEFT nCoV-2019_29_RIGHT +nCoV-2019_30_LEFT nCoV-2019_30_RIGHT +nCoV-2019_31_LEFT nCoV-2019_31_RIGHT +nCoV-2019_32_LEFT nCoV-2019_32_RIGHT +nCoV-2019_33_LEFT nCoV-2019_33_RIGHT +nCoV-2019_34_LEFT nCoV-2019_34_RIGHT +nCoV-2019_35_LEFT nCoV-2019_35_RIGHT +nCoV-2019_36_LEFT nCoV-2019_36_RIGHT +nCoV-2019_37_LEFT nCoV-2019_37_RIGHT +nCoV-2019_38_LEFT nCoV-2019_38_RIGHT +nCoV-2019_39_LEFT nCoV-2019_39_RIGHT +nCoV-2019_40_LEFT nCoV-2019_40_RIGHT +nCoV-2019_41_LEFT nCoV-2019_41_RIGHT +nCoV-2019_42_LEFT nCoV-2019_42_RIGHT +nCoV-2019_43_LEFT nCoV-2019_43_RIGHT +nCoV-2019_44_LEFT nCoV-2019_44_RIGHT +nCoV-2019_45_LEFT nCoV-2019_45_RIGHT +nCoV-2019_46_LEFT nCoV-2019_46_RIGHT +nCoV-2019_47_LEFT nCoV-2019_47_RIGHT +nCoV-2019_48_LEFT nCoV-2019_48_RIGHT +nCoV-2019_49_LEFT nCoV-2019_49_RIGHT +nCoV-2019_50_LEFT nCoV-2019_50_RIGHT +nCoV-2019_51_LEFT nCoV-2019_51_RIGHT +nCoV-2019_52_LEFT nCoV-2019_52_RIGHT +nCoV-2019_53_LEFT nCoV-2019_53_RIGHT +nCoV-2019_54_LEFT nCoV-2019_54_RIGHT +nCoV-2019_55_LEFT nCoV-2019_55_RIGHT +nCoV-2019_56_LEFT nCoV-2019_56_RIGHT +nCoV-2019_57_LEFT nCoV-2019_57_RIGHT +nCoV-2019_58_LEFT nCoV-2019_58_RIGHT +nCoV-2019_59_LEFT nCoV-2019_59_RIGHT +nCoV-2019_60_LEFT nCoV-2019_60_RIGHT +nCoV-2019_61_LEFT nCoV-2019_61_RIGHT +nCoV-2019_62_LEFT nCoV-2019_62_RIGHT +nCoV-2019_63_LEFT nCoV-2019_63_RIGHT +nCoV-2019_64_LEFT nCoV-2019_64_RIGHT +nCoV-2019_65_LEFT nCoV-2019_65_RIGHT +nCoV-2019_66_LEFT nCoV-2019_66_RIGHT +nCoV-2019_67_LEFT nCoV-2019_67_RIGHT +nCoV-2019_68_LEFT nCoV-2019_68_RIGHT +nCoV-2019_69_LEFT nCoV-2019_69_RIGHT +nCoV-2019_70_LEFT nCoV-2019_70_RIGHT +nCoV-2019_71_LEFT nCoV-2019_71_RIGHT +nCoV-2019_72_LEFT nCoV-2019_72_RIGHT +nCoV-2019_73_LEFT nCoV-2019_73_RIGHT +nCoV-2019_74_LEFT nCoV-2019_74_RIGHT +nCoV-2019_75_LEFT nCoV-2019_75_RIGHT +nCoV-2019_76_LEFT nCoV-2019_76_RIGHT +nCoV-2019_77_LEFT nCoV-2019_77_RIGHT +nCoV-2019_78_LEFT nCoV-2019_78_RIGHT +nCoV-2019_79_LEFT nCoV-2019_79_RIGHT +nCoV-2019_80_LEFT nCoV-2019_80_RIGHT +nCoV-2019_81_LEFT nCoV-2019_81_RIGHT +nCoV-2019_82_LEFT nCoV-2019_82_RIGHT +nCoV-2019_83_LEFT nCoV-2019_83_RIGHT +nCoV-2019_84_LEFT nCoV-2019_84_RIGHT +nCoV-2019_85_LEFT nCoV-2019_85_RIGHT +nCoV-2019_86_LEFT nCoV-2019_86_RIGHT +nCoV-2019_87_LEFT nCoV-2019_87_RIGHT +nCoV-2019_88_LEFT nCoV-2019_88_RIGHT +nCoV-2019_89_LEFT nCoV-2019_89_RIGHT +nCoV-2019_90_LEFT nCoV-2019_90_RIGHT +nCoV-2019_91_LEFT nCoV-2019_91_RIGHT +nCoV-2019_92_LEFT nCoV-2019_92_RIGHT +nCoV-2019_93_LEFT nCoV-2019_93_RIGHT +nCoV-2019_94_LEFT nCoV-2019_94_RIGHT +nCoV-2019_95_LEFT nCoV-2019_95_RIGHT +nCoV-2019_96_LEFT nCoV-2019_96_RIGHT +nCoV-2019_97_LEFT nCoV-2019_97_RIGHT +nCoV-2019_98_LEFT nCoV-2019_98_RIGHT diff --git a/primer_schemes/nCoV-2019/V3/nCoV-2019.primers.fasta b/primer_schemes/nCoV-2019/V3/nCoV-2019.primers.fasta new file mode 100644 index 0000000..21d555e --- /dev/null +++ b/primer_schemes/nCoV-2019/V3/nCoV-2019.primers.fasta @@ -0,0 +1,436 @@ +>nCoV-2019_10_LEFT +TGAGAAGTGCTCTGCCTATACAGT +>nCoV-2019_10_RIGHT +TCATCTAACCAATCTTCTTCTTGCTCT +>nCoV-2019_11_LEFT +GGAATTTGGTGCCACTTCTGCT +>nCoV-2019_11_RIGHT +TCATCAGATTCAACTTGCATGGCA +>nCoV-2019_12_LEFT +AAACATGGAGGAGGTGTTGCAG +>nCoV-2019_12_RIGHT +TTCACTCTTCATTTCCAAAAAGCTTGA +>nCoV-2019_13_LEFT +TCGCACAAATGTCTACTTAGCTGT +>nCoV-2019_13_RIGHT +ACCACAGCAGTTAAAACACCCT +>nCoV-2019_14_LEFT_alt4 +TGGCAATCTTCATCCAGATTCTGC +>nCoV-2019_14_LEFT +CATCCAGATTCTGCCACTCTTGT +>nCoV-2019_14_RIGHT +AGTTTCCACACAGACAGGCATT +>nCoV-2019_14_RIGHT_alt2 +TGCGTGTTTCTTCTGCATGTGC +>nCoV-2019_15_LEFT +ACAGTGCTTAAAAAGTGTAAAAGTGCC +>nCoV-2019_15_LEFT_alt1 +AGTGCTTAAAAAGTGTAAAAGTGCCT +>nCoV-2019_15_RIGHT +AACAGAAACTGTAGCTGGCACT +>nCoV-2019_15_RIGHT_alt3 +ACTGTAGCTGGCACTTTGAGAGA +>nCoV-2019_16_LEFT +AATTTGGAAGAAGCTGCTCGGT +>nCoV-2019_16_RIGHT +CACAACTTGCGTGTGGAGGTTA +>nCoV-2019_17_LEFT +CTTCTTTCTTTGAGAGAAGTGAGGACT +>nCoV-2019_17_RIGHT +TTTGTTGGAGTGTTAACAATGCAGT +>nCoV-2019_18_LEFT_alt2 +ACTTCTATTAAATGGGCAGATAACAACTGT +>nCoV-2019_18_LEFT +TGGAAATACCCACAAGTTAATGGTTTAAC +>nCoV-2019_18_RIGHT +AGCTTGTTTACCACACGTACAAGG +>nCoV-2019_18_RIGHT_alt1 +GCTTGTTTACCACACGTACAAGG +>nCoV-2019_19_LEFT +GCTGTTATGTACATGGGCACACT +>nCoV-2019_19_RIGHT +TGTCCAACTTAGGGTCAATTTCTGT +>nCoV-2019_1_LEFT +ACCAACCAACTTTCGATCTCTTGT +>nCoV-2019_1_RIGHT +CATCTTTAAGATGTTGACGTGCCTC +>nCoV-2019_20_LEFT +ACAAAGAAAACAGTTACACAACAACCA +>nCoV-2019_20_RIGHT +ACGTGGCTTTATTAGTTGCATTGTT +>nCoV-2019_21_LEFT_alt2 +GGCTATTGATTATAAACACTACACACCCT +>nCoV-2019_21_LEFT +TGGCTATTGATTATAAACACTACACACCC +>nCoV-2019_21_RIGHT_alt0 +GATCTGTGTGGCCAACCTCTTC +>nCoV-2019_21_RIGHT +TAGATCTGTGTGGCCAACCTCT +>nCoV-2019_22_LEFT +ACTACCGAAGTTGTAGGAGACATTATACT +>nCoV-2019_22_RIGHT +ACAGTATTCTTTGCTATAGTAGTCGGC +>nCoV-2019_23_LEFT +ACAACTACTAACATAGTTACACGGTGT +>nCoV-2019_23_RIGHT +ACCAGTACAGTAGGTTGCAATAGTG +>nCoV-2019_24_LEFT +AGGCATGCCTTCTTACTGTACTG +>nCoV-2019_24_RIGHT +ACATTCTAACCATAGCTGAAATCGGG +>nCoV-2019_25_LEFT +GCAATTGTTTTTCAGCTATTTTGCAGT +>nCoV-2019_25_RIGHT +ACTGTAGTGACAAGTCTCTCGCA +>nCoV-2019_26_LEFT +TTGTGATACATTCTGTGCTGGTAGT +>nCoV-2019_26_RIGHT +TCCGCACTATCACCAACATCAG +>nCoV-2019_27_LEFT +ACTACAGTCAGCTTATGTGTCAACC +>nCoV-2019_27_RIGHT +AATACAAGCACCAAGGTCACGG +>nCoV-2019_28_LEFT +ACATAGAAGTTACTGGCGATAGTTGT +>nCoV-2019_28_RIGHT +TGTTTAGACATGACATGAACAGGTGT +>nCoV-2019_29_LEFT +ACTTGTGTTCCTTTTTGTTGCTGC +>nCoV-2019_29_RIGHT +AGTGTACTCTATAAGTTTTGATGGTGTGT +>nCoV-2019_2_LEFT +CTGTTTTACAGGTTCGCGACGT +>nCoV-2019_2_RIGHT +TAAGGATCAGTGCCAAGCTCGT +>nCoV-2019_30_LEFT +GCACAACTAATGGTGACTTTTTGCA +>nCoV-2019_30_RIGHT +ACCACTAGTAGATACACAAACACCAG +>nCoV-2019_31_LEFT +TTCTGAGTACTGTAGGCACGGC +>nCoV-2019_31_RIGHT +ACAGAATAAACACCAGGTAAGAATGAGT +>nCoV-2019_32_LEFT 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