From 4337136144283a6281173b3feea6903271aead0b Mon Sep 17 00:00:00 2001 From: rambaut Date: Mon, 26 Aug 2024 11:22:23 +0100 Subject: [PATCH] Adding overview and credit section --- .../mpxv/mpxv-ont-bioinformatics-epi2me-sop.md | 15 ++++++++++----- 1 file changed, 10 insertions(+), 5 deletions(-) diff --git a/_resources/mpxv/mpxv-ont-bioinformatics-epi2me-sop.md b/_resources/mpxv/mpxv-ont-bioinformatics-epi2me-sop.md index c5e2258..cd833c8 100644 --- a/_resources/mpxv/mpxv-ont-bioinformatics-epi2me-sop.md +++ b/_resources/mpxv/mpxv-ont-bioinformatics-epi2me-sop.md @@ -23,19 +23,24 @@ category: mpxv-epi2me {% include callout.html type='default' -content="**Overview:** This document walks-through how to install and run the ARTIC bioinformatics pipeline in the ONT EPI2ME desktop software." +content="**Overview:** The `artic-mpxv-nf` workflow implements an ARTIC FieldBioinformatics pipeline for the purpose of preparing consensus sequences from MPXV genomes that have been DNA sequenced using a pooled tiling amplicon strategy. +This document walks-through how to install and run the ARTIC bioinformatics pipeline in the ONT EPI2ME desktop software." %} +## Credits / Acknowledgements + +This pipeline is possible due to the ongoing efforts of many people developing and maintaining bioinformatics software. For a complete list of acknowledgments please see the documentation on the pipeline Github repository: [https://github.com/artic-network/artic-mpxv-nf](https://github.com/artic-network/artic-mpxv-nf/blob/master/README.md) + +--- + +## Using the ARTIC MPXV analysis pipeline in EPI2ME + **Requirements:** * A working installation of EPI2ME. For instructions for installing EPI2ME, [see this document](/mpxv/mpxv-epi2me-setup.html). * Internet access to download the pipeline, and for the first time running it. After that, you should be able to run it offline. * Details about how the data was generated including the primer scheme used and the base-caller specified within the MinKNOW software. ---- - -## Using an ARTIC MPXV analysis pipeline in EPI2ME - ### **Import the workflow** Open EPI2ME. On the main dashboard select “View workflows”.