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Crosshair

Assisted targeting with an ultramicrotome

Installation

Crosshair is a Fiji plugin for targeted ultramicrotomy via 3D image data (e.g. micro-CT data).

Install imageJ, or update your existing version

If you haven't used Fiji/ImageJ before - you can download it from the ImageJ website.
If you're using an existing Fiji installation, make sure it is up to date!
Go to Help > Update... in the imagej menu, and select Apply Changes.

Add the Crosshair update site

Go to Help > Update... in the imagej menu, and select Manage update sites.
In the new window that pops up, select Add Unlisted Site. This will create a new row in the table.
Fill this row out so it looks like below:

Active Name URL Host Directory on Host Description
Crosshair https://sites.imagej.net/Crosshair/

Then click Apply and Close, followed by Apply Changes.

User guide

A full user guide is provided in the Crosshair wiki.

Cite

If you use Crosshair in your work, please cite our paper on eLife

Reporting issues

If you find a problem with Crosshair, please let us know!
Go to the issue tracker and click the green New issue button at the top right. Write a short title and description for your issue, along with information about what type of computer you were using (Windows / mac etc.). Then click the Submit new issue button.