diff --git a/README.md b/README.md index ccc750d..9cbac94 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,3 @@ - # miplicorn @@ -12,6 +11,7 @@ coverage](https://codecov.io/gh/bailey-lab/miplicorn/branch/main/graph/badge.svg experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental) [![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT) + miplicorn establishes a unified analysis framework in R for molecular @@ -27,7 +27,7 @@ You may install the package from
-``` r +```r # Install most recent released version devtools::install_github("bailey-lab/miplicorn@v0.2.1") ``` @@ -36,7 +36,7 @@ devtools::install_github("bailey-lab/miplicorn@v0.2.1")
-``` r +```r # Install development version devtools::install_github("bailey-lab/miplicorn") ``` @@ -48,7 +48,7 @@ devtools::install_github("bailey-lab/miplicorn") See `vignette("miplicorn")` for a more extensive introduction and a demonstration of several features of the package. -``` r +```r library(miplicorn) ref_file <- miplicorn_example("reference_AA_table.csv") @@ -74,7 +74,7 @@ plot_coverage(data, mutation_name) -``` r +```r prev <- mutation_prevalence(data, threshold = 5) prev diff --git a/inst/WORDLIST b/inst/WORDLIST index 457b5c0..73a5efc 100644 --- a/inst/WORDLIST +++ b/inst/WORDLIST @@ -1,42 +1,87 @@ Amplicon amplicon +Aris +arispas +bootswatch +bslib +cgi CMD Codecov +codecov colour coloured colours +config +covr dbplyr +desc dplyr dtplyr +env erroring eval extdata falciparum +faq filepath +Fira +gff ggplot +gh Github +github +haplotyping +href +http +https +io +JamesIves karyoplot karyoploteR +Lato Lifecycle +macOS magrittr +MERCHANTABILITY Metaprogramming MIP miplicorn MIPTools MIPtools +monospace NaN +nav +navbar +ncbi +nih +nlm +NONINFRINGEMENT +oldrel ORCID +os +pandoc +Paschalidis pkgdown PlasmoDB Plasmodium pts +px +rcmdcheck README rect +Reprex rlang +Rscript +rspm signalling +sublicense +tbl tibble TSV tunnelled tunnelling +ubuntu UMI umi +www +wwwtax