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From this comment:
It could be worth doing an experiment to check if the explicit bit vector from GetFingerprintAsNumpy can be replaced by a call to GetSparseFingerprint which returns a SparseBitVect that is much smaller than the explicit version. In this way much less temporary memory would need to be allocated. However, I am not sure if the csr_matrix constructor supports the SparseBitVect. In addition, this more memory efficient way is probably slower than using numpy arrays.
The text was updated successfully, but these errors were encountered:
From this comment:
It could be worth doing an experiment to check if the explicit bit vector from
GetFingerprintAsNumpy
can be replaced by a call toGetSparseFingerprint
which returns aSparseBitVect
that is much smaller than the explicit version. In this way much less temporary memory would need to be allocated. However, I am not sure if thecsr_matrix
constructor supports theSparseBitVect
. In addition, this more memory efficient way is probably slower than using numpy arrays.The text was updated successfully, but these errors were encountered: