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mkdocs.yaml
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mkdocs.yaml
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site_name: 'baudisgroup @ UZH & SIB'
site_description: 'Computational Oncogenomics Group @ UZH & SIB'
site_author: Michael Baudis
copyright: '© Copyright 2007 - 2024 Michael Baudis'
repo_name: 'baudisgroup.github.io'
repo_url: https://github.com/baudisgroup/baudisgroup.github.io
edit_uri: edit/main/docs/
###############################################################################
nav:
- 'Baudisgroup Home': index.md
- Address: address
- Group Members: group
- Publications: publications
- Presentations: presentations
- Projects and Open Positions: projects-and-positions.md
- 'Teaching and Seminars':
- 'BIO390 Lectures ↗': https://compbiozurich.org/teaching/UZH-BIO390/
- 'BIO392 Block Course ↗': https://compbiozurich.org/teaching/UZH-BIO392/
- 'ZH Bioinfo Seminars ↗': https://compbiozurich.org/news/
- 'Progenetix ↗': http://progenetix.org
- 'Cancercelllines ↗': http://cancercelllines.org
- 'CompbioZurich ↗': https://compbiozurich.org
- 'SchemaBlocks {S}[B] ↗': https://schemablocks.org
- Beacon Project ↗: https://beacon-project.io
- Michael Baudis @ UZH ↗: https://www.mls.uzh.ch/en/research/baudis.html
###############################################################################
markdown_extensions:
- toc:
toc_depth: 2-3
permalink: true
- admonition
- attr_list
- footnotes
- md_in_html
- pymdownx.critic
- pymdownx.caret
- pymdownx.details
- pymdownx.keys
- pymdownx.magiclink:
hide_protocol: true
- pymdownx.mark
- pymdownx.tilde
- pymdownx.saneheaders
# - pymdownx.superfences:
# custom_fences:
# - name: mermaid
# class: mermaid
# format: !!python/name:mermaid2.fence_mermaid
- pymdownx.tabbed:
alternate_style: true
- pymdownx.tasklist:
custom_checkbox: true
- tables
- mdx_gh_links:
user: hCNV
repo: hcnv.github.io
# - pymdownx.emoji:
# emoji_index: !!python/name:material.extensions.emoji.twemoji
# emoji_generator: !!python/name:materialx.emoji.to_svg
# options:
# custom_icons:
# - extras/.icons
###############################################################################
theme:
name: material
palette:
primary: white
accent: white
favicon: img/favicon.ico
logo: img/site_logo.png
icon:
repo: fontawesome/brands/github-alt
admonition:
example: octicons/list-ordered-24
features:
- content.tabs.link
- search.highlight
- search.share
- navigation.instant
- navigation.tracking
- navigation.sections
- toc.integrate
custom_dir: extras
plugins:
- search
# - with-pdf:
# author: Progenetix
# output_path: pdf/progenetix-documentation.pdf
# - macros
# - mermaid2
extra:
excerpt_separator: <!--more-->
blog_list_length: 100
news:
dir: news
presentations:
dir: presentations
publications:
dir: publications
contacts:
dir: group
social:
- icon: fontawesome/brands/github
link: https://github.com/baudisgroup
extra_css:
- css/theme_overrides.css