Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

get sequence region of a chromosome #6

Open
fabdavid opened this issue Nov 5, 2013 · 0 comments
Open

get sequence region of a chromosome #6

fabdavid opened this issue Nov 5, 2013 · 0 comments

Comments

@fabdavid
Copy link
Member

fabdavid commented Nov 5, 2013

One should adapt the current code in bbcflib to use the samtools faidx. It will simplify the code and makes the sequence retrieval faster. The change has already been operated in genrep (get_sequence_part function in the chromosomes controller).
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@fabdavid