install_packages.R

#!/usr/bin/env Rscript
options(repos = structure(c(CRAN = "https://cran.rstudio.com/")))

install.packages("data.table")
install.packages("ggplot2")
install.packages("circlize")
install.packages("grDevices")
install.packages("RSQLite")
install.packages("http://d3gb.usal.es/docs/package/r/D3GB_1.1.tar.gz", repos = NULL, type = "source")
install.packages("optparse")
install.packages("docopt")
install.packages("checkmate")
install.packages("R.utils")
if (!requireNamespace("BiocManager", quietly = TRUE))
  install.packages("BiocManager")
BiocManager::install("GenomicRanges")