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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(addGeneNames)
export(autotrack)
export(colByCategory)
export(colByChr)
export(colByRegion)
export(colByValue)
export(darker)
export(filterParams)
export(findIntersections)
export(getChromosomeNamesBoundingBox)
export(getColorSchemas)
export(getCytobandColors)
export(getCytobands)
export(getDataPanelBoundingBox)
export(getDefaultPlotParams)
export(getMainTitleBoundingBox)
export(getTextSize)
export(getVariantsColors)
export(horizonColors)
export(is.color)
export(kpAbline)
export(kpAddBaseNumbers)
export(kpAddChromosomeNames)
export(kpAddChromosomeSeparators)
export(kpAddColorRect)
export(kpAddCytobandLabels)
export(kpAddCytobands)
export(kpAddCytobandsAsLine)
export(kpAddLabels)
export(kpAddMainTitle)
export(kpArea)
export(kpArrows)
export(kpAxis)
export(kpBars)
export(kpDataBackground)
export(kpHeatmap)
export(kpLines)
export(kpPlotBAMCoverage)
export(kpPlotBAMDensity)
export(kpPlotBigWig)
export(kpPlotCoverage)
export(kpPlotDensity)
export(kpPlotGenes)
export(kpPlotHorizon)
export(kpPlotLinks)
export(kpPlotLoess)
export(kpPlotManhattan)
export(kpPlotMarkers)
export(kpPlotNames)
export(kpPlotRainfall)
export(kpPlotRegions)
export(kpPlotRibbon)
export(kpPlotTranscripts)
export(kpPoints)
export(kpPolygon)
export(kpRect)
export(kpSegments)
export(kpText)
export(lighter)
export(makeGenesDataFromTxDb)
export(mergeTranscripts)
export(plotDefaultPlotParams)
export(plotKaryotype)
export(plotPalettes)
export(prepareParameters2)
export(prepareParameters4)
export(processClipping)
export(transparent)
import(GenomicRanges)
import(methods)
import(regioneR)
importFrom(AnnotationDbi,select)
importFrom(AnnotationDbi,taxonomyId)
importFrom(GenomeInfoDb,Seqinfo)
importFrom(GenomeInfoDb,genome)
importFrom(GenomeInfoDb,keepSeqlevels)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomicFeatures,cds)
importFrom(GenomicFeatures,exons)
importFrom(GenomicFeatures,genes)
importFrom(GenomicFeatures,organism)
importFrom(GenomicFeatures,transcriptsBy)
importFrom(GenomicRanges,coverage)
importFrom(IRanges,IRanges)
importFrom(IRanges,IntegerList)
importFrom(IRanges,overlapsAny)
importFrom(IRanges,subsetByOverlaps)
importFrom(IRanges,which)
importFrom(Rsamtools,BamFile)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,countBam)
importFrom(Rsamtools,idxstatsBam)
importFrom(S4Vectors,intersect)
importFrom(S4Vectors,runLength)
importFrom(S4Vectors,runValue)
importFrom(VariantAnnotation,alt)
importFrom(VariantAnnotation,readVcfAsVRanges)
importFrom(VariantAnnotation,ref)
importFrom(bamsignals,bamCoverage)
importFrom(bezier,bezier)
importFrom(biovizBase,getIdeogram)
importFrom(digest,digest)
importFrom(grDevices,adjustcolor)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRamp)
importFrom(grDevices,rainbow)
importFrom(graphics,par)
importFrom(graphics,segments)
importFrom(graphics,strwidth)
importFrom(memoise,memoise)
importFrom(rtracklayer,BigWigFile)
importFrom(rtracklayer,seqinfo)
importFrom(rtracklayer,summary)
importFrom(rtracklayer,ucscTableQuery)
importFrom(stats,loess)
importFrom(stats,predict)
importFrom(stats,qt)
importFrom(stats,setNames)