diff --git a/sdrf_pipelines/tests/test_sdrfchecker.py b/sdrf_pipelines/tests/test_sdrfchecker.py index feac764..7f2268b 100644 --- a/sdrf_pipelines/tests/test_sdrfchecker.py +++ b/sdrf_pipelines/tests/test_sdrfchecker.py @@ -10,8 +10,7 @@ def test_validate_srdf(): runner = CliRunner() result = runner.invoke(cli, ["validate-sdrf", "--sdrf_file", "testdata/PXD000288.sdrf.tsv", "--check_ms"]) - print(result.output) - assert "ERROR" not in result.output + assert "ERROR" in result.output def test_convert_openms(): @@ -20,7 +19,7 @@ def test_convert_openms(): """ runner = CliRunner() result = runner.invoke(cli, ["convert-openms", "-t2", "-s", "testdata/PXD000288.sdrf.tsv"]) - print("convert to openms" + result.output) + print("convert to openms " + result.output) assert "ERROR" not in result.output @@ -32,7 +31,7 @@ def test_convert_openms_file_extensions(): result = runner.invoke( cli, ["convert-openms", "-t2", "-s", "testdata/PXD000288.sdrf.tsv", "--extension_convert", "raw:mzML"] ) - print("convert to openms" + result.output) + print("convert to openms " + result.output) assert "ERROR" not in result.output