diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 89d9109..851b621 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -71,7 +71,7 @@ jobs: for sdrf in testdata/*/*.sdrf.tsv do pushd $(dirname $sdrf) - python ../../parse_sdrf.py convert-openms -s $(pwd)/../../$sdrf -t2 + python ../../parse_sdrf.py convert-openms -s $(pwd)/../../$sdrf -t2 --extension_convert raw:mzML diff -c experimental_design.tsv expected_experimental_design.tsv >> ../../failures.txt diff -c expected_openms.tsv openms.tsv >> ../../failures.txt popd