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Documentation on expected Slurm configuration #25

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DAlvGar opened this issue Jul 4, 2024 · 1 comment
Open

Documentation on expected Slurm configuration #25

DAlvGar opened this issue Jul 4, 2024 · 1 comment

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@DAlvGar
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DAlvGar commented Jul 4, 2024

Dear developpers,

thanks for all the hard work of putting all this together and releasing it opensource ;) I was wondering if you have any documentation regarding the expected slurm configuration and/or how to adjust the program for different settings? Eg. I have no partition named gpu. Could you also comment on which parts of the work need gpu and which don't? If I have a simple workstation with 1 gpu and 32 cores, could I still run the program? You can imagine I don't have a complex slurm set-up.
Any advice is very welcome!
Regards
Daniel

@RiesBen
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RiesBen commented Jul 17, 2024

Hi @DAlvGar ,
so settings for the HPC configs are stored here: https://github.com/bigginlab/ABFE_workflow/blob/5619e0c2d735569725e9e39e7c565eacbd681cfd/src/abfe/template/cluster_configs/default_slurm_template.json

however the calculations are rather costly, I'm not sure if it is advisable to use the workflow on a local workstation :)

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