python-package.yml

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

name: PoreAnalyser #PoreFinding_Ellipsoid # PoreFinding_pdb PoreFinder

on:
  push:
    branches: [ "main" ]
  pull_request:
    branches: [ "main" ]

jobs:
  build:

    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.9", "3.10", "3.11"]

    steps:
    - uses: actions/checkout@v3
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v3
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        python -m pip install flake8 
        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
    - name: Lint with flake8
      run: |
        # stop the build if there are Python syntax errors or undefined names
        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude=chimeraX_pore.py
        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
    - name: Set execute permissions
      run: chmod +x PoreAnalyser/hole2/hole # PoreFinding/hole2/hole
    - name: Debugging Output
      run: |
        echo "ls -la /home/runner/work/PoreAnalyser/"
        ls -la /home/runner/work/PoreAnalyser/
        echo "ls -la /home/runner/work/PoreAnalyser/PoreAnalyser/"
        ls -la /home/runner/work/PoreAnalyser/PoreAnalyser/
        echo "ls -la /home/runner/work/PoreAnalyser/PoreAnalyser/PoreAnalyser/hole2/"
        ls -la /home/runner/work/PoreAnalyser/PoreAnalyser/PoreAnalyser/hole2/
        echo "pwd"
        pwd 
        echo "Current directory: $(pwd)"
    - name: Check Architecture Compatibility
      run: |
          file /home/runner/work/PoreAnalyser/PoreAnalyser/PoreAnalyser/hole2/hole
    #- name: Run hole2
    #  run: |
    #    # echo "hole2/./hole"
    #    # hole2/./hole
    #    ./home/runner/work/PoreFinding_pdb/PoreFinding_pdb/hole2/hole
    - name: Test with unittest
      run: |
        python -m unittest 
    - name: Debug Info
      run: |
        echo "Current Version: $(python -c "import PoreAnalyser as pf; print(pf.__version__)")"