package extra full

[FynnBe]

We had a discussion about adding where/how to add the ruamel.yaml dependency, which is already included in the test extra. @oeway suggested a new extra: full

test also includes pytest, tox and mypy. so maybe adding full is justified...

Originally posted by @FynnBe in #259 (comment)

[FynnBe]

one alternative to full and mentioning it in the README.md would be to mention the optional requirement of ruamel.yaml there instead.

[oeway]

Hi @FynnBe I recently did some fix for another package which meant for both native and pyodide, I think the best solution so far is to use the conditional statement.

setup(
    ...,
    install_requires=[
        ...
        "ruamel.yaml;platform_system!='Emscripten'", # will be included for native python
    ],
)

See here: pyodide/pyodide#1984 (comment)

[k-dominik]

naive question @oeway: is there a way to test the package with pyodide in CI?

[oeway]

@k-dominik Sure, basically we can install a browser in CI and use that to run a webpage to test pyodide. I was doing this with playwright which also has a python version. This does mean it requires some efforts to set it up.

[constantinpape]

Issue reported by @esgomezm:
The validation command in the doc: https://github.com/bioimage-io/spec-bioimage-io#bioimageio-spec-validator does not work as expected.
This is because yaml is not included in the default installation (see discussions in this issue).
We should also somewhere add a recommendation to use bioimageio.core if one has access to a full python installation, as this avoids many issues.

[oeway]

I believe we already have a solution for this using the conditional requirement in the setup.py file. @Fynn

…

On Mon 29 Nov 2021 at 14:36, Constantin Pape ***@***.***> wrote: Issue reported by @esgomezm <https://github.com/esgomezm>: The validation command in the doc: https://github.com/bioimage-io/spec-bioimage-io#bioimageio-spec-validator does not work as expected. This is because yaml is not included in the default installation (see discussions in this issue). We should also somewhere add a recommendation to use bioimageio.core if one has access to a full python installation, as this avoids many issues. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#265 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AADU3SYCTS6UCGLEF3I4VL3UON6XBANCNFSM5GL6HSZQ> .