From f96501625951104fbb2aaa90747b079b32befa7d Mon Sep 17 00:00:00 2001
From: DavyCats <davycats.dc@gmail.com>
Date: Fri, 16 Dec 2022 13:50:02 +0100
Subject: [PATCH] set runAdapterClipping to true by default

---
 CHANGELOG                  | 4 ++++
 WGSinCancerDiagnostics.wdl | 4 ++--
 2 files changed, 6 insertions(+), 2 deletions(-)

diff --git a/CHANGELOG b/CHANGELOG
index 99f0585..b43e4dc 100644
--- a/CHANGELOG
+++ b/CHANGELOG
@@ -7,6 +7,10 @@ Newest changes should be on top.
 This document is user facing. Please word the changes in such a way
 that users understand how the changes affect the new version.
 -->
+version 3.0.3
+---------------------------
++ `runAdapterClipping` is now set to true by default.
+
 version 3.0.2
 ---------------------------
 + Limit the number of chunks per fastq file to 16. Fastp will run into
diff --git a/WGSinCancerDiagnostics.wdl b/WGSinCancerDiagnostics.wdl
index 5d17e48..29d63cd 100644
--- a/WGSinCancerDiagnostics.wdl
+++ b/WGSinCancerDiagnostics.wdl
@@ -95,11 +95,11 @@ workflow WGSinCancerDiagnostics {
         File cohortMapping
         File cohortPercentiles
 
-        Boolean runAdapterClipping = false
+        Boolean runAdapterClipping = true
         Int totalMappingChunks = 25
     }
 
-    String versionString = "3.0.2"
+    String versionString = "3.0.3"
     
     meta {allowNestedInputs: true}