From 42de601a679977243274e82c6d0a05bc35d488f7 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Tue, 22 Oct 2024 14:08:18 -0700 Subject: [PATCH 01/35] Start JSON schema loader into grip graph --- cmd/load/main.go | 6 +- cmd/mapping/main.go | 13 +- cmd/schema/main.go | 72 +-- config/config.go | 4 +- endpoints/graphql/builder.go | 474 ---------------- endpoints/graphql/filter_build.go | 78 --- endpoints/graphql/handler.go | 129 ----- endpoints/graphql/test/graphql_query_test.go | 110 ---- endpoints/graphql/test/main_test.go | 201 ------- endpoints/graphqlv2/builder.go | 563 ------------------- endpoints/graphqlv2/filter_build.go | 78 --- endpoints/graphqlv2/handler.go | 129 ----- go.mod | 6 +- go.sum | 14 +- gripql/graph.go | 193 ------- schema/graph.go | 304 ++++++++++ {gripql => schema}/graph_test.go | 2 +- {gripql/schema => schema}/scan.go | 0 18 files changed, 348 insertions(+), 2028 deletions(-) delete mode 100644 endpoints/graphql/builder.go delete mode 100644 endpoints/graphql/filter_build.go delete mode 100644 endpoints/graphql/handler.go delete mode 100644 endpoints/graphql/test/graphql_query_test.go delete mode 100644 endpoints/graphql/test/main_test.go delete mode 100644 endpoints/graphqlv2/builder.go delete mode 100644 endpoints/graphqlv2/filter_build.go delete mode 100644 endpoints/graphqlv2/handler.go delete mode 100644 gripql/graph.go create mode 100644 schema/graph.go rename {gripql => schema}/graph_test.go (99%) rename {gripql/schema => schema}/scan.go (100%) diff --git a/cmd/load/main.go b/cmd/load/main.go index b2e18422..5cdf86a1 100644 --- a/cmd/load/main.go +++ b/cmd/load/main.go @@ -6,6 +6,8 @@ import ( "github.com/bmeg/grip/cmd/load/example" "github.com/bmeg/grip/gripql" "github.com/bmeg/grip/log" + "github.com/bmeg/grip/schema" + graphSchema "github.com/bmeg/grip/schema" "github.com/bmeg/grip/util" "github.com/bmeg/grip/util/rpc" "github.com/spf13/cobra" @@ -153,7 +155,7 @@ var Cmd = &cobra.Command{ if jsonFile != "" { log.Infof("Loading json file: %s", jsonFile) - graphs, err := gripql.ParseJSONGraphsFile(jsonFile) + graphs, err := graphSchema.ParseJSONGraphsFile(jsonFile) if err != nil { return err } @@ -171,7 +173,7 @@ var Cmd = &cobra.Command{ if yamlFile != "" { log.Infof("Loading YAML file: %s", yamlFile) - graphs, err := gripql.ParseYAMLGraphsFile(yamlFile) + graphs, err := schema.ParseYAMLGraphsFile(yamlFile) if err != nil { return err } diff --git a/cmd/mapping/main.go b/cmd/mapping/main.go index f4e8605a..60dc7325 100644 --- a/cmd/mapping/main.go +++ b/cmd/mapping/main.go @@ -6,6 +6,7 @@ import ( "os" "github.com/bmeg/grip/gripql" + graphSchema "github.com/bmeg/grip/schema" "github.com/bmeg/grip/util/rpc" "github.com/spf13/cobra" ) @@ -43,9 +44,9 @@ var getCmd = &cobra.Command{ var txt string if yaml { - txt, err = gripql.GraphToYAMLString(schema) + txt, err = graphSchema.GraphToYAMLString(schema) } else { - txt, err = gripql.GraphToJSONString(schema) + txt, err = graphSchema.GraphToJSONString(schema) } if err != nil { return err @@ -78,9 +79,9 @@ var postCmd = &cobra.Command{ if err != nil { return err } - graphs, err = gripql.ParseJSONGraphs(bytes) + graphs, err = graphSchema.ParseJSONGraphs(bytes) } else { - graphs, err = gripql.ParseJSONGraphsFile(jsonFile) + graphs, err = graphSchema.ParseJSONGraphsFile(jsonFile) } if err != nil { return err @@ -101,9 +102,9 @@ var postCmd = &cobra.Command{ if err != nil { return err } - graphs, err = gripql.ParseYAMLGraphs(bytes) + graphs, err = graphSchema.ParseYAMLGraphs(bytes) } else { - graphs, err = gripql.ParseYAMLGraphsFile(yamlFile) + graphs, err = graphSchema.ParseYAMLGraphsFile(yamlFile) } if err != nil { return err diff --git a/cmd/schema/main.go b/cmd/schema/main.go index fb3c570d..73da4424 100644 --- a/cmd/schema/main.go +++ b/cmd/schema/main.go @@ -6,8 +6,9 @@ import ( "os" "github.com/bmeg/grip/gripql" - gripql_schema "github.com/bmeg/grip/gripql/schema" "github.com/bmeg/grip/log" + "github.com/bmeg/grip/schema" + graphSchema "github.com/bmeg/grip/schema" "github.com/bmeg/grip/util/rpc" "github.com/spf13/cobra" ) @@ -16,6 +17,7 @@ var host = "localhost:8202" var yaml = false var jsonFile string var yamlFile string +var jsonSchemaFile string var sampleCount uint32 = 50 var excludeLabels []string @@ -47,9 +49,9 @@ var getCmd = &cobra.Command{ var txt string if yaml { - txt, err = gripql.GraphToYAMLString(schema) + txt, err = graphSchema.GraphToYAMLString(schema) } else { - txt, err = gripql.GraphToJSONString(schema) + txt, err = graphSchema.GraphToJSONString(schema) } if err != nil { return err @@ -65,7 +67,7 @@ var postCmd = &cobra.Command{ Long: ``, Args: cobra.NoArgs, RunE: func(cmd *cobra.Command, args []string) error { - if jsonFile == "" && yamlFile == "" { + if jsonFile == "" && yamlFile == "" && jsonSchemaFile == "" { return fmt.Errorf("no schema file was provided") } @@ -82,9 +84,9 @@ var postCmd = &cobra.Command{ if err != nil { return err } - graphs, err = gripql.ParseJSONGraphs(bytes) + graphs, err = graphSchema.ParseJSONGraphs(bytes) } else { - graphs, err = gripql.ParseJSONGraphsFile(jsonFile) + graphs, err = graphSchema.ParseJSONGraphsFile(jsonFile) } if err != nil { return err @@ -106,9 +108,9 @@ var postCmd = &cobra.Command{ if err != nil { return err } - graphs, err = gripql.ParseYAMLGraphs(bytes) + graphs, err = graphSchema.ParseYAMLGraphs(bytes) } else { - graphs, err = gripql.ParseYAMLGraphsFile(yamlFile) + graphs, err = graphSchema.ParseYAMLGraphsFile(yamlFile) } if err != nil { return err @@ -120,46 +122,23 @@ var postCmd = &cobra.Command{ } } } - return nil - }, -} -var sampleCmd = &cobra.Command{ - Use: "sample ", - Short: "Sample graph and construct schema", - Long: ``, - Args: cobra.ExactArgs(1), - RunE: func(cmd *cobra.Command, args []string) error { - graph := args[0] - - conn, err := gripql.Connect(rpc.ConfigWithDefaults(host), true) - if err != nil { - return err - } - - var schema *gripql.Graph - if manual { - schema, err = gripql_schema.ScanSchema(conn, graph, sampleCount, excludeLabels) + if jsonSchemaFile != "" { + log.Infof("Loading Json Schema file: %s", jsonSchemaFile) + graphs, err := schema.ParseJSONSchemaGraphsFile(jsonSchemaFile) if err != nil { return err } - } else { - schema, err = conn.SampleSchema(graph) - if err != nil { - return err + for _, g := range graphs { + err := conn.AddSchema(g) + if err != nil { + return err + } + log.Debug("Posted schema: %s", g.Graph) } + } - var txt string - if yaml { - txt, err = gripql.GraphToYAMLString(schema) - } else { - txt, err = gripql.GraphToJSONString(schema) - } - if err != nil { - return err - } - fmt.Printf("%s\n", txt) - conn.Close() + return nil }, } @@ -173,15 +152,8 @@ func init() { pflags.StringVar(&host, "host", host, "grip server url") pflags.StringVar(&jsonFile, "json", "", "JSON graph file") pflags.StringVar(&yamlFile, "yaml", "", "YAML graph file") - - sflags := sampleCmd.Flags() - sflags.StringVar(&host, "host", host, "grip server url") - sflags.Uint32Var(&sampleCount, "sample", sampleCount, "Number of elements to sample") - sflags.BoolVar(&yaml, "yaml", yaml, "output schema in YAML rather than JSON format") - sflags.BoolVar(&manual, "manual", manual, "Use client side schema sampling") - sflags.StringSliceVar(&excludeLabels, "exclude-label", excludeLabels, "exclude vertex/edge label from schema") + pflags.StringVar(&jsonSchemaFile, "jsonSchema", "", "Json Schema") Cmd.AddCommand(getCmd) Cmd.AddCommand(postCmd) - Cmd.AddCommand(sampleCmd) } diff --git a/config/config.go b/config/config.go index b5d6f119..0292fa83 100644 --- a/config/config.go +++ b/config/config.go @@ -11,10 +11,10 @@ import ( "github.com/bmeg/grip/elastic" esql "github.com/bmeg/grip/existing-sql" "github.com/bmeg/grip/gripper" - "github.com/bmeg/grip/gripql" "github.com/bmeg/grip/log" "github.com/bmeg/grip/mongo" "github.com/bmeg/grip/psql" + "github.com/bmeg/grip/schema" "github.com/bmeg/grip/sqlite" "github.com/bmeg/grip/util" "github.com/bmeg/grip/util/duration" @@ -211,7 +211,7 @@ func ParseConfigFile(relpath string, conf *Config) error { if err != nil { return fmt.Errorf("failed to parse config at path %s: \n%v", path, err) } - graph, err := gripql.GraphMapToProto(data) + graph, err := schema.GraphMapToProto(data) if err != nil { return fmt.Errorf("failed to parse config at path %s: \n%v", path, err) } diff --git a/endpoints/graphql/builder.go b/endpoints/graphql/builder.go deleted file mode 100644 index f32ec943..00000000 --- a/endpoints/graphql/builder.go +++ /dev/null @@ -1,474 +0,0 @@ -package main - -import ( - "fmt" - - "github.com/bmeg/grip/gripql" - "github.com/bmeg/grip/log" - "github.com/graphql-go/graphql" - "github.com/graphql-go/graphql/language/ast" -) - -const ARG_LIMIT = "first" -const ARG_OFFSET = "offset" -const ARG_ID = "id" -const ARG_IDS = "ids" -const ARG_FILTER = "filter" - -var JSONScalar = graphql.NewScalar(graphql.ScalarConfig{ - Name: "JSON", - Serialize: func(value interface{}) interface{} { - return fmt.Sprintf("Serialize %v", value) - }, - ParseValue: func(value interface{}) interface{} { - fmt.Printf("Unmarshal JSON: %v %T\n", value, value) - return value - }, - ParseLiteral: func(valueAST ast.Value) interface{} { - fmt.Printf("ParseLiteral: %#v\n", valueAST) - /* - switch valueAST := valueAST.(type) { - case *ast.StringValue: - id, _ := models.IDFromString(valueAST.Value) - return id - default: - return nil - }*/ - return nil - }, -}) - -// buildGraphQLSchema reads a GRIP graph schema (which is stored as a graph) and creates -// a GraphQL-GO based schema. The GraphQL-GO schema all wraps the request functions that use -// the gripql.Client to find the requested data -func buildGraphQLSchema(schema *gripql.Graph, client gripql.Client, graph string) (*graphql.Schema, error) { - if schema == nil { - return nil, fmt.Errorf("graphql.NewSchema error: nil gripql.Graph for graph: %s", graph) - } - // Build the set of objects for all vertex labels - objectMap, err := buildObjectMap(client, graph, schema) - if err != nil { - return nil, fmt.Errorf("graphql.NewSchema error: %v", err) - } - - // Build the set of objects that exist in the query structuer - queryObj := buildQueryObject(client, graph, objectMap) - schemaConfig := graphql.SchemaConfig{ - Query: queryObj, - } - - // Setup the GraphQL schema based on the objects there have been created - gqlSchema, err := graphql.NewSchema(schemaConfig) - if err != nil { - return nil, fmt.Errorf("graphql.NewSchema error: %v", err) - } - - return &gqlSchema, nil -} - -func buildField(x string) (*graphql.Field, error) { - var o *graphql.Field - switch x { - case "NUMERIC": - o = &graphql.Field{Type: graphql.Float} - case "STRING": - o = &graphql.Field{Type: graphql.String} - case "BOOL": - o = &graphql.Field{Type: graphql.Boolean} - default: - return nil, fmt.Errorf("%s does not map to a GQL type", x) - } - return o, nil -} - -func buildSliceField(name string, s []interface{}) (*graphql.Field, error) { - var f *graphql.Field - var err error - - if len(s) > 0 { - val := s[0] - if x, ok := val.(map[string]interface{}); ok { - f, err = buildObjectField(name, x) - } else if x, ok := val.([]interface{}); ok { - f, err = buildSliceField(name, x) - - } else if x, ok := val.(string); ok { - f, err = buildField(x) - } else { - err = fmt.Errorf("unhandled type: %T %v", val, val) - } - - } else { - err = fmt.Errorf("slice is empty") - } - - if err != nil { - return nil, fmt.Errorf("buildSliceField error: %v", err) - } - - return &graphql.Field{Type: graphql.NewList(f.Type)}, nil -} - -// buildObjectField wraps the result of buildObject in a graphql.Field so it can be -// a child of slice of another -func buildObjectField(name string, obj map[string]interface{}) (*graphql.Field, error) { - o, err := buildObject(name, obj) - if err != nil { - return nil, err - } - if len(o.Fields()) == 0 { - return nil, fmt.Errorf("no fields in object") - } - return &graphql.Field{Type: o}, nil -} - -func buildObject(name string, obj map[string]interface{}) (*graphql.Object, error) { - objFields := graphql.Fields{} - - for key, val := range obj { - var err error - - // handle map - if x, ok := val.(map[string]interface{}); ok { - // make object name parent_field - var f *graphql.Field - f, err = buildObjectField(name+"_"+key, x) - if err == nil { - objFields[key] = f - } - // handle slice - } else if x, ok := val.([]interface{}); ok { - var f *graphql.Field - f, err = buildSliceField(key, x) - if err == nil { - objFields[key] = f - } - // handle string - } else if x, ok := val.(string); ok { - if f, err := buildField(x); err == nil { - objFields[key] = f - } else { - log.WithFields(log.Fields{"object": name, "field": key, "error": err}).Error("graphql: buildField ignoring field") - } - // handle other cases - } else { - err = fmt.Errorf("unhandled type: %T %v", val, val) - } - - if err != nil { - log.WithFields(log.Fields{"object": name, "field": key, "error": err}).Error("graphql: buildObject") - // return nil, fmt.Errorf("object: %s: field: %s: error: %v", name, key, err) - } - } - - return graphql.NewObject( - graphql.ObjectConfig{ - Name: name, - Fields: objFields, - }, - ), nil -} - -// buildObjectMap scans the GripQL schema and turns all of the vertex types into different objects -func buildObjectMap(client gripql.Client, graph string, schema *gripql.Graph) (map[string]*graphql.Object, error) { - objects := map[string]*graphql.Object{} - - for _, obj := range schema.Vertices { - if obj.Label == "Vertex" { - props := obj.GetDataMap() - if props == nil { - continue - } - props["id"] = "STRING" - gqlObj, err := buildObject(obj.Gid, props) - if err != nil { - return nil, err - } - if len(gqlObj.Fields()) > 0 { - objects[obj.Gid] = gqlObj - } - } - } - - // Setup outgoing edge fields - // Note: edge properties are not accessible in this model - for i, obj := range schema.Edges { - if _, ok := objects[obj.From]; ok { - if _, ok := objects[obj.To]; ok { - obj := obj // This makes an inner loop copy of the variable that is used by the Resolve function - fname := obj.Label - //ensure the fname is unique - for j := range schema.Edges { - if i != j { - if schema.Edges[i].From == schema.Edges[j].From && schema.Edges[i].Label == schema.Edges[j].Label { - fname = obj.Label + "_to_" + obj.To - } - } - } - - f := &graphql.Field{ - Name: fname, - Type: graphql.NewList(objects[obj.To]), - Resolve: func(p graphql.ResolveParams) (interface{}, error) { - srcMap, ok := p.Source.(map[string]interface{}) - if !ok { - return nil, fmt.Errorf("source conversion failed: %v", p.Source) - } - srcGid, ok := srcMap["id"].(string) - if !ok { - return nil, fmt.Errorf("source gid conversion failed: %+v", srcMap) - } - q := gripql.V(srcGid).HasLabel(obj.From).Out(obj.Label).HasLabel(obj.To) - result, err := client.Traversal(&gripql.GraphQuery{Graph: graph, Query: q.Statements}) - if err != nil { - return nil, err - } - out := []interface{}{} - for r := range result { - d := r.GetVertex().GetDataMap() - d["id"] = r.GetVertex().Gid - out = append(out, d) - } - return out, nil - }, - } - fmt.Printf("building: %#v %s\n", f, obj.From) - objects[obj.From].AddFieldConfig(fname, f) - } - } - } - - return objects, nil -} - -func buildFieldConfigArgument(obj *graphql.Object) graphql.FieldConfigArgument { - args := graphql.FieldConfigArgument{ - ARG_ID: &graphql.ArgumentConfig{Type: graphql.String}, - ARG_IDS: &graphql.ArgumentConfig{Type: graphql.NewList(graphql.String)}, - ARG_LIMIT: &graphql.ArgumentConfig{Type: graphql.Int, DefaultValue: 100}, - ARG_OFFSET: &graphql.ArgumentConfig{Type: graphql.Int, DefaultValue: 0}, - ARG_FILTER: &graphql.ArgumentConfig{Type: JSONScalar}, - } - if obj == nil { - return args - } - for k, v := range obj.Fields() { - switch v.Type { - case graphql.String, graphql.Int, graphql.Float, graphql.Boolean: - args[k] = &graphql.ArgumentConfig{Type: v.Type} - default: - continue - } - } - return args -} - -func buildAggregationField(client gripql.Client, graph string, objects map[string]*graphql.Object) *graphql.Field { - - stringBucket := graphql.NewObject(graphql.ObjectConfig{ - Name: "BucketsForString", - Fields: graphql.Fields{ - "key": &graphql.Field{Name: "key", Type: graphql.String}, - "count": &graphql.Field{Name: "count", Type: graphql.Int}, - }, - }) - - histogram := graphql.NewObject(graphql.ObjectConfig{ - Name: "Histogram", - Fields: graphql.Fields{ - "histogram": &graphql.Field{ - Type: graphql.NewList(stringBucket), - }, - }, - }) - - queryFields := graphql.Fields{} - - for k, obj := range objects { - if len(obj.Fields()) > 0 { - label := obj.Name() - - aggFields := graphql.Fields{ - "_totalCount": &graphql.Field{Name: "_totalCount", Type: graphql.Int}, - } - for k, v := range obj.Fields() { - switch v.Type { - case graphql.String: - aggFields[k] = - &graphql.Field{ - Name: k, - Type: histogram, - } - } - } - - ao := graphql.NewObject(graphql.ObjectConfig{ - Name: k + "Aggregation", - Fields: aggFields, - }) - queryFields[k+"Aggregation"] = &graphql.Field{ - Name: k + "Aggregation", - Type: ao, - Args: graphql.FieldConfigArgument{ - "filter": &graphql.ArgumentConfig{Type: JSONScalar}, - }, - Resolve: func(p graphql.ResolveParams) (interface{}, error) { - var filter *FilterBuilder - if filterArg, ok := p.Args[ARG_FILTER].(map[string]any); ok { - fmt.Printf("Filter: %#v\n", filterArg) - filter = NewFilterBuilder(filterArg) - } - q := gripql.V().HasLabel(label) - if filter != nil { - var err error - q, err = filter.ExtendGrip(q) - if err != nil { - return nil, err - } - } - - aggs := []*gripql.Aggregate{ - {Name: "_totalCount", Aggregation: &gripql.Aggregate_Count{}}, - } - - counts := map[string][]any{} - for _, i := range p.Info.FieldASTs { - if i.SelectionSet != nil { - for _, j := range i.SelectionSet.Selections { - if k, ok := j.(*ast.Field); ok { - if k.Name.Value != "_totalCount" { - aggs = append(aggs, &gripql.Aggregate{ - Name: k.Name.Value, - Aggregation: &gripql.Aggregate_Term{ - Term: &gripql.TermAggregation{ - Field: k.Name.Value, - }, - }, - }) - counts[k.Name.Value] = []any{} - } - } - } - } - } - - q = q.Aggregate(aggs) - - result, err := client.Traversal(&gripql.GraphQuery{Graph: graph, Query: q.Statements}) - if err != nil { - return nil, err - } - out := map[string]any{} - - for i := range result { - agg := i.GetAggregations() - if agg.Name == "_totalCount" { - out["_totalCount"] = int(agg.Value) - } else { - counts[agg.Name] = append(counts[agg.Name], map[string]any{ - "key": agg.Key, - "count": agg.Value, - }) - } - } - for k, v := range counts { - out[k] = map[string]any{"histogram": v} - } - return out, nil - }, - } - } - } - - aggregationObject := graphql.NewObject(graphql.ObjectConfig{ - Name: "AggregationObject", - Fields: queryFields, - }) - - return &graphql.Field{ - Name: "_aggregation", - Type: aggregationObject, - Resolve: func(p graphql.ResolveParams) (interface{}, error) { - // top level resolve doesn't do anything - // but it needs to return an empty object so that the GraphQL - // library will go to the child fields and call their resolvers - return map[string]any{}, nil - }, - } - -} - -// buildQueryObject scans the built objects, which were derived from the list of vertex types -// found in the schema. It then build a query object that will take search parameters -// and create lists of objects of that type -func buildQueryObject(client gripql.Client, graph string, objects map[string]*graphql.Object) *graphql.Object { - - queryFields := graphql.Fields{} - // For each of the objects that have been listed in the objectMap build a query entry point - for objName, obj := range objects { - label := obj.Name() - f := &graphql.Field{ - Name: objName, - Type: graphql.NewList(obj), - Args: buildFieldConfigArgument(obj), - Resolve: func(p graphql.ResolveParams) (interface{}, error) { - q := gripql.V().HasLabel(label) - if id, ok := p.Args[ARG_ID].(string); ok { - //fmt.Printf("Doing %s id=%s query", label, id) - q = gripql.V(id).HasLabel(label) - } - if ids, ok := p.Args[ARG_IDS].([]string); ok { - q = gripql.V(ids...).HasLabel(label) - } - var filter *FilterBuilder - if filterArg, ok := p.Args[ARG_FILTER].(map[string]any); ok { - fmt.Printf("Filter: %#v\n", filterArg) - filter = NewFilterBuilder(filterArg) - } - for key, val := range p.Args { - switch key { - case ARG_ID, ARG_IDS, ARG_LIMIT, ARG_OFFSET, ARG_FILTER: - default: - q = q.Has(gripql.Eq(key, val)) - } - } - //if filter was passed, apply it - if filter != nil { - var err error - q, err = filter.ExtendGrip(q) - if err != nil { - return nil, err - } - } - limit := p.Args[ARG_LIMIT].(int) - offset := p.Args[ARG_OFFSET].(int) - q = q.Skip(uint32(offset)).Limit(uint32(limit)) - result, err := client.Traversal(&gripql.GraphQuery{Graph: graph, Query: q.Statements}) - if err != nil { - return nil, err - } - out := []interface{}{} - for r := range result { - //fmt.Printf("ID query traversal: %s\n", r) - d := r.GetVertex().GetDataMap() - d["id"] = r.GetVertex().Gid - out = append(out, d) - } - return out, nil - }, - } - - queryFields[objName] = f - } - - queryFields["_aggregation"] = buildAggregationField(client, graph, objects) - - query := graphql.NewObject( - graphql.ObjectConfig{ - Name: "Query", - Fields: queryFields, - }, - ) - fmt.Printf("Query fields: %#v\n", queryFields) - return query -} diff --git a/endpoints/graphql/filter_build.go b/endpoints/graphql/filter_build.go deleted file mode 100644 index 3d19c43d..00000000 --- a/endpoints/graphql/filter_build.go +++ /dev/null @@ -1,78 +0,0 @@ -package main - -import ( - "github.com/bmeg/grip/log" - - "github.com/bmeg/grip/gripql" -) - -type FilterBuilder struct { - filter map[string]any -} - -func NewFilterBuilder(i map[string]any) *FilterBuilder { - return &FilterBuilder{i} -} - -func isFilterEQ(q map[string]any) (any, bool) { - for _, i := range []string{"=", "eq", "EQ"} { - if val, ok := q[i]; ok { - return val, ok - } - } - return nil, false -} - -func isFilterGT(q map[string]any) (any, bool) { - for _, i := range []string{">", "gt", "GT"} { - if val, ok := q[i]; ok { - return val, ok - } - } - return nil, false -} - -func isFilterLT(q map[string]any) (any, bool) { - for _, i := range []string{"<", "lt", "LT"} { - if val, ok := q[i]; ok { - return val, ok - } - } - return nil, false -} - -func fieldMap(s string) string { - if s == "id" { - return "_gid" - } - return s -} - -func (fb *FilterBuilder) ExtendGrip(q *gripql.Query) (*gripql.Query, error) { - if val, ok := isFilterEQ(fb.filter); ok { - if vMap, ok := val.(map[string]any); ok { - for k, v := range vMap { - k = fieldMap(k) - q = q.Has(gripql.Eq(k, v)) - } - } - } - if val, ok := isFilterGT(fb.filter); ok { - if vMap, ok := val.(map[string]any); ok { - for k, v := range vMap { - k = fieldMap(k) - q = q.Has(gripql.Gt(k, v)) - } - } - } - if val, ok := isFilterLT(fb.filter); ok { - if vMap, ok := val.(map[string]any); ok { - for k, v := range vMap { - k = fieldMap(k) - q = q.Has(gripql.Lt(k, v)) - } - } - } - log.Infof("Filter Query %s", q.String()) - return q, nil -} diff --git a/endpoints/graphql/handler.go b/endpoints/graphql/handler.go deleted file mode 100644 index db19dd4a..00000000 --- a/endpoints/graphql/handler.go +++ /dev/null @@ -1,129 +0,0 @@ -/* -GraphQL Web endpoint -*/ - -package main - -import ( - "fmt" - "net/http" - - "github.com/bmeg/grip/gripql" - "github.com/bmeg/grip/log" - "github.com/graphql-go/handler" -) - -// handle the graphql queries for a single endpoint -type graphHandler struct { - graph string - gqlHandler *handler.Handler - timestamp string - client gripql.Client - //schema *gripql.Graph -} - -// Handler is a GraphQL endpoint to query the Grip database -type Handler struct { - handlers map[string]*graphHandler - client gripql.Client -} - -// NewClientHTTPHandler initilizes a new GraphQLHandler -func NewHTTPHandler(client gripql.Client, config map[string]string) (http.Handler, error) { - h := &Handler{ - client: client, - handlers: map[string]*graphHandler{}, - } - return h, nil -} - -// Static HTML that links to Apollo GraphQL query editor -var sandBox = ` -
- -` - -// ServeHTTP responds to HTTP graphql requests -func (gh *Handler) ServeHTTP(writer http.ResponseWriter, request *http.Request) { - //log.Infof("Request for %s", request.URL.Path) - //If no graph provided, return the Query Editor page - if request.URL.Path == "" || request.URL.Path == "/" { - writer.Write([]byte(sandBox)) - return - } - //pathRE := regexp.MustCompile("/(.+)$") - //graphName := pathRE.FindStringSubmatch(request.URL.Path)[1] - graphName := request.URL.Path - var handler *graphHandler - var ok bool - if handler, ok = gh.handlers[graphName]; ok { - //Call the setup function. If nothing has changed it will return without doing anything - err := handler.setup() - if err != nil { - http.Error(writer, fmt.Sprintf("No GraphQL handler found for graph: %s", graphName), http.StatusInternalServerError) - return - } - } else { - //Graph handler was not found, so we'll need to set it up - var err error - handler, err = newGraphHandler(graphName, gh.client) - if err != nil { - http.Error(writer, fmt.Sprintf("No GraphQL handler found for graph: %s", graphName), http.StatusInternalServerError) - return - } - gh.handlers[graphName] = handler - } - if handler != nil && handler.gqlHandler != nil { - handler.gqlHandler.ServeHTTP(writer, request) - } else { - http.Error(writer, fmt.Sprintf("No GraphQL handler found for graph: %s", graphName), http.StatusInternalServerError) - } -} - -// newGraphHandler creates a new graphql handler from schema -func newGraphHandler(graph string, client gripql.Client) (*graphHandler, error) { - o := &graphHandler{ - graph: graph, - client: client, - } - err := o.setup() - if err != nil { - return nil, err - } - return o, nil -} - -// check timestamp to see if schema needs to be updated, and if so -// rebuild graphql schema -func (gh *graphHandler) setup() error { - ts, _ := gh.client.GetTimestamp(gh.graph) - if ts == nil || ts.Timestamp != gh.timestamp { - log.WithFields(log.Fields{"graph": gh.graph}).Info("Reloading GraphQL schema") - schema, err := gh.client.GetSchema(gh.graph) - if err != nil { - log.WithFields(log.Fields{"graph": gh.graph, "error": err}).Error("GetSchema error") - return err - } - gqlSchema, err := buildGraphQLSchema(schema, gh.client, gh.graph) - if err != nil { - log.WithFields(log.Fields{"graph": gh.graph, "error": err}).Error("GraphQL schema build failed") - gh.gqlHandler = nil - gh.timestamp = "" - } else { - log.WithFields(log.Fields{"graph": gh.graph}).Info("Built GraphQL schema") - gh.gqlHandler = handler.New(&handler.Config{ - Schema: gqlSchema, - }) - gh.timestamp = ts.Timestamp - } - } - return nil -} diff --git a/endpoints/graphql/test/graphql_query_test.go b/endpoints/graphql/test/graphql_query_test.go deleted file mode 100644 index 7cc9f380..00000000 --- a/endpoints/graphql/test/graphql_query_test.go +++ /dev/null @@ -1,110 +0,0 @@ -package test - -import ( - "fmt" - //"io/ioutil" - //"net/http" - //"bytes" - "context" - "testing" - - //"encoding/json" - - "github.com/bmeg/jsonpath" - "github.com/machinebox/graphql" -) - -var tests = [][]string{ - { - ` - query { - Character(id:"1"){ - id - name - starships_to_Starship { - name - } - } - } - `, - `{}`, - }, -} - -func TestQuerySet(t *testing.T) { - url := fmt.Sprintf("http://%s/graphql/%s", GraphQLAddr, GraphName) - client := graphql.NewClient(url) - - for _, pair := range tests { - req := graphql.NewRequest(pair[0]) - - ctx := context.Background() - respData := map[string]interface{}{} - if err := client.Run(ctx, req, &respData); err != nil { - t.Error(err) - } - //out, err := json.Marshal(respData) - //if err != nil { - // t.Error(err) - //} - //fmt.Printf("out: %s\n", out) - } -} - -func TestCharacterQuery(t *testing.T) { - url := fmt.Sprintf("http://%s/graphql/%s", GraphQLAddr, GraphName) - client := graphql.NewClient(url) - - // make a request - req := graphql.NewRequest(` - query { - Character(id:"Character:1"){ - id - name - starships_to_Starship { - name - } - } - } - `) - - ctx := context.Background() - respData := map[string]interface{}{} - if err := client.Run(ctx, req, &respData); err != nil { - t.Error(err) - } - - out, err := jsonpath.JsonPathLookup(respData, "$.Character[0].id") - if err != nil { - t.Error(err) - } - if idStr, ok := out.(string); ok { - if idStr != "Character:1" { - t.Errorf("id mismatch: %s != %s", "Character:1", idStr) - } - } else { - t.Errorf("ID not string") - } -} - -func TestIntrospectionQuery(t *testing.T) { - url := fmt.Sprintf("http://%s/graphql/%s", GraphQLAddr, GraphName) - client := graphql.NewClient(url) - - // make a request - req := graphql.NewRequest(`{ - __type(name:"Character") { - fields { - name - description - } - } - }`) - - ctx := context.Background() - respData := map[string]interface{}{} - if err := client.Run(ctx, req, &respData); err != nil { - t.Error(err) - } - //fmt.Printf("Response: %#v\n", respData) -} diff --git a/endpoints/graphql/test/main_test.go b/endpoints/graphql/test/main_test.go deleted file mode 100644 index 6a8d0220..00000000 --- a/endpoints/graphql/test/main_test.go +++ /dev/null @@ -1,201 +0,0 @@ -package test - -import ( - "context" - "flag" - "fmt" - "log" - "net/http" - "os" - "sort" - "testing" - "time" - - "github.com/bmeg/grip/config" - "github.com/bmeg/grip/elastic" - "github.com/bmeg/grip/endpoints/graphql" - "github.com/bmeg/grip/gdbi" - "github.com/bmeg/grip/grids" - "github.com/bmeg/grip/gripql" - "github.com/bmeg/grip/gripql/schema" - "github.com/bmeg/grip/kvgraph" - _ "github.com/bmeg/grip/kvi/badgerdb" // import so badger will register itself - _ "github.com/bmeg/grip/kvi/boltdb" // import so bolt will register itself - _ "github.com/bmeg/grip/kvi/leveldb" // import so level will register itself - "github.com/bmeg/grip/mongo" - "github.com/bmeg/grip/psql" - "github.com/bmeg/grip/server" - "github.com/bmeg/grip/util" - _ "github.com/lib/pq" // import so postgres will register as a sql driver - //"google.golang.org/protobuf/encoding/protojson" -) - -var configFile string -var gdb gdbi.GraphDB -var db gdbi.GraphInterface -var dbname string -var vertices = []*gripql.Vertex{} -var edges = []*gripql.Edge{} - -var GraphQLAddr = "localhost:9080" -var GraphName = "test-graph" - -func setupGraph() error { - // sort edges/vertices and insert one at a time to ensure the same write order - sort.Slice(vertices[:], func(i, j int) bool { - return vertices[i].Gid < vertices[j].Gid - }) - for _, v := range vertices { - err := db.AddVertex([]*gdbi.Vertex{gdbi.NewElementFromVertex(v)}) - if err != nil { - return err - } - } - - sort.Slice(edges[:], func(i, j int) bool { - return edges[i].Gid < edges[j].Gid - }) - for _, e := range edges { - err := db.AddEdge([]*gdbi.Edge{gdbi.NewElementFromEdge(e)}) - if err != nil { - return err - } - } - - return nil -} - -func TestMain(m *testing.M) { - flag.StringVar(&configFile, "config", configFile, "config file to use for tests") - flag.Parse() - - configFile = "../" + configFile - - vertChan, err := util.StreamVerticesFromFile("../../conformance/graphs/swapi.vertices", 2) - if err != nil { - panic(err) - } - for v := range vertChan { - vertices = append(vertices, v) - } - edgeChan, err := util.StreamEdgesFromFile("../../conformance/graphs/swapi.edges", 2) - if err != nil { - panic(err) - } - for e := range edgeChan { - edges = append(edges, e) - } - - var exit = 1 - - defer func() { - fmt.Println("tests exiting with code", exit) - os.Exit(exit) - }() - - conf := config.DefaultConfig() - if configFile != "" { - err := config.ParseConfigFile(configFile, conf) - if err != nil { - fmt.Printf("error processing config file: %v", err) - return - } - } - - config.TestifyConfig(conf) - fmt.Printf("Test config: %+v\n", conf) - dbconfig := conf.Drivers[conf.Default] - - if dbconfig.Badger != nil { - gdb, err = kvgraph.NewKVGraphDB("badger", *dbconfig.Badger) - defer func() { - os.RemoveAll(*dbconfig.Badger) - }() - } else if dbconfig.Bolt != nil { - gdb, err = kvgraph.NewKVGraphDB("bolt", *dbconfig.Bolt) - defer func() { - os.RemoveAll(*dbconfig.Bolt) - }() - } else if dbconfig.Level != nil { - gdb, err = kvgraph.NewKVGraphDB("badger", *dbconfig.Level) - defer func() { - os.RemoveAll(*dbconfig.Level) - }() - } else if dbconfig.Grids != nil { - gdb, err = grids.NewGraphDB(*dbconfig.Grids) - defer func() { - os.RemoveAll(*dbconfig.Grids) - }() - } else if dbconfig.Elasticsearch != nil { - gdb, err = elastic.NewGraphDB(*dbconfig.Elasticsearch) - } else if dbconfig.MongoDB != nil { - gdb, err = mongo.NewGraphDB(*dbconfig.MongoDB) - } else if dbconfig.PSQL != nil { - gdb, err = psql.NewGraphDB(*dbconfig.PSQL) - } else { - err = fmt.Errorf("unknown database") - } - - err = gdb.AddGraph(GraphName) - if err != nil { - fmt.Println("Error: failed to add graph:", err) - return - } - - db, err = gdb.Graph(GraphName) - if err != nil { - fmt.Println("Error: failed to connect to graph:", err) - return - } - - if dbname != "existing-sql" { - err = setupGraph() - if err != nil { - fmt.Println("Error: setting up graph:", err) - return - } - } - - srv, err := server.NewGripServer(conf, "./", map[string]gdbi.GraphDB{conf.Default: gdb}) - if err != nil { - fmt.Println("Error: failed to init server", err) - return - } - - conn := gripql.WrapClient(gripql.NewQueryDirectClient(srv), gripql.NewEditDirectClient(srv), nil, nil) - - sch, err := schema.ScanSchema(conn, GraphName, 10, []string{}) - if err != nil { - fmt.Println("Error: failed to init server", err) - return - } - - //fmt.Printf("Adding Schema: %s\n", protojson.Format(sch)) - err = conn.AddSchema(sch) - if err != nil { - fmt.Printf("Error: failed to add schema %s\n", err) - return - } - gqlHandler, err := graphql.NewClientHTTPHandler(conn) - - httpServer := http.Server{Addr: GraphQLAddr, Handler: gqlHandler} - - go func() { - if err := httpServer.ListenAndServe(); err != http.ErrServerClosed { - // Error starting or closing listener: - log.Fatalf("HTTP server ListenAndServe: %v", err) - } - }() - - defer os.RemoveAll(conf.Server.WorkDir) - time.Sleep(time.Second) - - // run tests - exit = m.Run() - - if err := httpServer.Shutdown(context.Background()); err != nil { - // Error from closing listeners, or context timeout: - log.Printf("HTTP server Shutdown: %v", err) - } - -} diff --git a/endpoints/graphqlv2/builder.go b/endpoints/graphqlv2/builder.go deleted file mode 100644 index b18b79a4..00000000 --- a/endpoints/graphqlv2/builder.go +++ /dev/null @@ -1,563 +0,0 @@ -package main - -import ( - "fmt" - - "github.com/bmeg/grip/gripql" - "github.com/bmeg/grip/log" - "github.com/graphql-go/graphql" - "github.com/graphql-go/graphql/language/ast" -) - -const ARG_LIMIT = "first" -const ARG_OFFSET = "offset" -const ARG_ID = "id" -const ARG_IDS = "ids" -const ARG_FILTER = "filter" - -var JSONScalar = graphql.NewScalar(graphql.ScalarConfig{ - Name: "JSON", - Serialize: func(value interface{}) interface{} { - return fmt.Sprintf("Serialize %v", value) - }, - ParseValue: func(value interface{}) interface{} { - fmt.Printf("Unmarshal JSON: %v %T\n", value, value) - return value - }, - ParseLiteral: func(valueAST ast.Value) interface{} { - fmt.Printf("ParseLiteral: %#v\n", valueAST) - /* - switch valueAST := valueAST.(type) { - case *ast.StringValue: - id, _ := models.IDFromString(valueAST.Value) - return id - default: - return nil - }*/ - return nil - }, -}) - -// buildGraphQLSchema reads a GRIP graph schema (which is stored as a graph) and creates -// a GraphQL-GO based schema. The GraphQL-GO schema all wraps the request functions that use -// the gripql.Client to find the requested data -func buildGraphQLSchema(schema *gripql.Graph, client gripql.Client, graph string) (*graphql.Schema, error) { - if schema == nil { - return nil, fmt.Errorf("graphql.NewSchema error: nil gripql.Graph for graph: %s", graph) - } - // Build the set of objects for all vertex labels - objectMap, err := buildObjectMap(client, graph, schema) - if err != nil { - return nil, fmt.Errorf("graphql.NewSchema error: %v", err) - } - - // Build the set of objects that exist in the query structuer - queryObj := buildQueryObject(client, graph, objectMap) - schemaConfig := graphql.SchemaConfig{ - Query: queryObj, - } - - // Setup the GraphQL schema based on the objects there have been created - gqlSchema, err := graphql.NewSchema(schemaConfig) - if err != nil { - return nil, fmt.Errorf("graphql.NewSchema error: %v", err) - } - - return &gqlSchema, nil -} - -func buildField(x string) (*graphql.Field, error) { - var o *graphql.Field - switch x { - case "NUMERIC": - o = &graphql.Field{Type: graphql.Float} - case "STRING": - o = &graphql.Field{Type: graphql.String} - case "BOOL": - o = &graphql.Field{Type: graphql.Boolean} - default: - return nil, fmt.Errorf("%s does not map to a GQL type", x) - } - return o, nil -} - -func buildSliceField(name string, s []interface{}) (*graphql.Field, error) { - var f *graphql.Field - var err error - - if len(s) > 0 { - val := s[0] - if x, ok := val.(map[string]interface{}); ok { - f, err = buildObjectField(name, x) - } else if x, ok := val.([]interface{}); ok { - f, err = buildSliceField(name, x) - - } else if x, ok := val.(string); ok { - f, err = buildField(x) - } else { - err = fmt.Errorf("unhandled type: %T %v", val, val) - } - - } else { - err = fmt.Errorf("slice is empty") - } - - if err != nil { - return nil, fmt.Errorf("buildSliceField error: %v", err) - } - - return &graphql.Field{Type: graphql.NewList(f.Type)}, nil -} - -// buildObjectField wraps the result of buildObject in a graphql.Field so it can be -// a child of slice of another -func buildObjectField(name string, obj map[string]interface{}) (*graphql.Field, error) { - o, err := buildObject(name, obj) - if err != nil { - return nil, err - } - if len(o.Fields()) == 0 { - return nil, fmt.Errorf("no fields in object") - } - return &graphql.Field{Type: o}, nil -} - -func buildObject(name string, obj map[string]interface{}) (*graphql.Object, error) { - objFields := graphql.Fields{} - - for key, val := range obj { - var err error - - // handle map - if x, ok := val.(map[string]interface{}); ok { - // make object name parent_field - var f *graphql.Field - f, err = buildObjectField(name+"_"+key, x) - if err == nil { - objFields[key] = f - } - // handle slice - } else if x, ok := val.([]interface{}); ok { - var f *graphql.Field - f, err = buildSliceField(key, x) - if err == nil { - objFields[key] = f - } - // handle string - } else if x, ok := val.(string); ok { - if f, err := buildField(x); err == nil { - objFields[key] = f - } else { - log.WithFields(log.Fields{"object": name, "field": key, "error": err}).Error("graphql: buildField ignoring field") - } - // handle other cases - } else { - err = fmt.Errorf("unhandled type: %T %v", val, val) - } - - if err != nil { - log.WithFields(log.Fields{"object": name, "field": key, "error": err}).Error("graphql: buildObject") - // return nil, fmt.Errorf("object: %s: field: %s: error: %v", name, key, err) - } - } - - return graphql.NewObject( - graphql.ObjectConfig{ - Name: name, - Fields: objFields, - }, - ), nil -} - -type objectMap struct { - objects map[string]*graphql.Object - edgeLabel map[string]map[string]string - edgeDstType map[string]map[string]string -} - -// buildObjectMap scans the GripQL schema and turns all of the vertex types into different objects -func buildObjectMap(client gripql.Client, graph string, schema *gripql.Graph) (*objectMap, error) { - objects := map[string]*graphql.Object{} - edgeLabel := map[string]map[string]string{} - edgeDstType := map[string]map[string]string{} - - for _, obj := range schema.Vertices { - if obj.Label == "Vertex" { - props := obj.GetDataMap() - if props == nil { - continue - } - props["id"] = "STRING" - gqlObj, err := buildObject(obj.Gid, props) - if err != nil { - return nil, err - } - if len(gqlObj.Fields()) > 0 { - objects[obj.Gid] = gqlObj - } - } - edgeLabel[obj.Gid] = map[string]string{} - edgeDstType[obj.Gid] = map[string]string{} - } - - // Setup outgoing edge fields - // Note: edge properties are not accessible in this model - for i, obj := range schema.Edges { - if _, ok := objects[obj.From]; ok { - if _, ok := objects[obj.To]; ok { - obj := obj // This makes an inner loop copy of the variable that is used by the Resolve function - fname := obj.Label - - //ensure the fname is unique - for j := range schema.Edges { - if i != j { - if schema.Edges[i].From == schema.Edges[j].From && schema.Edges[i].Label == schema.Edges[j].Label { - fname = obj.Label + "_to_" + obj.To - } - } - } - edgeLabel[obj.From][fname] = obj.Label - edgeDstType[obj.From][fname] = obj.To - - f := &graphql.Field{ - Name: fname, - Type: graphql.NewList(objects[obj.To]), - /* - Resolve: func(p graphql.ResolveParams) (interface{}, error) { - srcMap, ok := p.Source.(map[string]interface{}) - if !ok { - return nil, fmt.Errorf("source conversion failed: %v", p.Source) - } - srcGid, ok := srcMap["id"].(string) - if !ok { - return nil, fmt.Errorf("source gid conversion failed: %+v", srcMap) - } - fmt.Printf("Field resolve: %s\n", srcGid) - q := gripql.V(srcGid).HasLabel(obj.From).Out(obj.Label).HasLabel(obj.To) - result, err := client.Traversal(&gripql.GraphQuery{Graph: graph, Query: q.Statements}) - if err != nil { - return nil, err - } - out := []interface{}{} - for r := range result { - d := r.GetVertex().GetDataMap() - d["id"] = r.GetVertex().Gid - out = append(out, d) - } - return out, nil - }, - */ - } - fmt.Printf("building: %#v %s\n", f, obj.From) - objects[obj.From].AddFieldConfig(fname, f) - } - } - } - - return &objectMap{objects: objects, edgeLabel: edgeLabel, edgeDstType: edgeDstType}, nil -} - -func buildFieldConfigArgument(obj *graphql.Object) graphql.FieldConfigArgument { - args := graphql.FieldConfigArgument{ - ARG_ID: &graphql.ArgumentConfig{Type: graphql.String}, - ARG_IDS: &graphql.ArgumentConfig{Type: graphql.NewList(graphql.String)}, - ARG_LIMIT: &graphql.ArgumentConfig{Type: graphql.Int, DefaultValue: 100}, - ARG_OFFSET: &graphql.ArgumentConfig{Type: graphql.Int, DefaultValue: 0}, - ARG_FILTER: &graphql.ArgumentConfig{Type: JSONScalar}, - } - if obj == nil { - return args - } - for k, v := range obj.Fields() { - switch v.Type { - case graphql.String, graphql.Int, graphql.Float, graphql.Boolean: - args[k] = &graphql.ArgumentConfig{Type: v.Type} - default: - continue - } - } - return args -} - -func buildAggregationField(client gripql.Client, graph string, objects *objectMap) *graphql.Field { - - stringBucket := graphql.NewObject(graphql.ObjectConfig{ - Name: "BucketsForString", - Fields: graphql.Fields{ - "key": &graphql.Field{Name: "key", Type: graphql.String}, - "count": &graphql.Field{Name: "count", Type: graphql.Int}, - }, - }) - - histogram := graphql.NewObject(graphql.ObjectConfig{ - Name: "Histogram", - Fields: graphql.Fields{ - "histogram": &graphql.Field{ - Type: graphql.NewList(stringBucket), - }, - }, - }) - - queryFields := graphql.Fields{} - - for k, obj := range objects.objects { - if len(obj.Fields()) > 0 { - label := obj.Name() - - aggFields := graphql.Fields{ - "_totalCount": &graphql.Field{Name: "_totalCount", Type: graphql.Int}, - } - for k, v := range obj.Fields() { - switch v.Type { - case graphql.String: - aggFields[k] = - &graphql.Field{ - Name: k, - Type: histogram, - } - } - } - - ao := graphql.NewObject(graphql.ObjectConfig{ - Name: k + "Aggregation", - Fields: aggFields, - }) - queryFields[k+"Aggregation"] = &graphql.Field{ - Name: k + "Aggregation", - Type: ao, - Args: graphql.FieldConfigArgument{ - "filter": &graphql.ArgumentConfig{Type: JSONScalar}, - }, - Resolve: func(p graphql.ResolveParams) (interface{}, error) { - var filter *FilterBuilder - if filterArg, ok := p.Args[ARG_FILTER].(map[string]any); ok { - fmt.Printf("Filter: %#v\n", filterArg) - filter = NewFilterBuilder(filterArg) - } - q := gripql.V().HasLabel(label) - if filter != nil { - var err error - q, err = filter.ExtendGrip(q) - if err != nil { - return nil, err - } - } - - aggs := []*gripql.Aggregate{ - {Name: "_totalCount", Aggregation: &gripql.Aggregate_Count{}}, - } - - counts := map[string][]any{} - for _, i := range p.Info.FieldASTs { - if i.SelectionSet != nil { - for _, j := range i.SelectionSet.Selections { - if k, ok := j.(*ast.Field); ok { - if k.Name.Value != "_totalCount" { - aggs = append(aggs, &gripql.Aggregate{ - Name: k.Name.Value, - Aggregation: &gripql.Aggregate_Term{ - Term: &gripql.TermAggregation{ - Field: k.Name.Value, - }, - }, - }) - counts[k.Name.Value] = []any{} - } - } - } - } - } - - q = q.Aggregate(aggs) - - result, err := client.Traversal(&gripql.GraphQuery{Graph: graph, Query: q.Statements}) - if err != nil { - return nil, err - } - out := map[string]any{} - - for i := range result { - agg := i.GetAggregations() - if agg.Name == "_totalCount" { - out["_totalCount"] = int(agg.Value) - } else { - counts[agg.Name] = append(counts[agg.Name], map[string]any{ - "key": agg.Key, - "count": agg.Value, - }) - } - } - for k, v := range counts { - out[k] = map[string]any{"histogram": v} - } - return out, nil - }, - } - } - } - - aggregationObject := graphql.NewObject(graphql.ObjectConfig{ - Name: "AggregationObject", - Fields: queryFields, - }) - - return &graphql.Field{ - Name: "_aggregation", - Type: aggregationObject, - Resolve: func(p graphql.ResolveParams) (interface{}, error) { - // top level resolve doesn't do anything - // but it needs to return an empty object so that the GraphQL - // library will go to the child fields and call their resolvers - return map[string]any{}, nil - }, - } -} - -type renderTree struct { - fields []string - parent map[string]string - fieldName map[string]string -} - -func (rt *renderTree) NewElement(cur string, fieldName string) string { - rName := fmt.Sprintf("f%d", len(rt.fields)) - rt.fields = append(rt.fields, rName) - rt.parent[rName] = cur - rt.fieldName[rName] = fieldName - return rName -} - -func (om *objectMap) traversalBuild(query *gripql.Query, vertLabel string, field *ast.Field, curElement string, rt *renderTree) *gripql.Query { - //fmt.Printf("VertLabel: %s\n", vertLabel) - moved := false - for _, s := range field.SelectionSet.Selections { - if k, ok := s.(*ast.Field); ok { - if edgeLabel, ok := om.edgeLabel[vertLabel][k.Name.Value]; ok { - if dstLabel, ok := om.edgeDstType[vertLabel][k.Name.Value]; ok { - if moved { - query = query.Select(curElement) - } - rName := rt.NewElement(curElement, k.Name.Value) - query = query.OutNull(edgeLabel).As(rName) - query = om.traversalBuild(query, dstLabel, k, rName, rt) - moved = true - } - } - } - } - return query -} - -// buildQueryObject scans the built objects, which were derived from the list of vertex types -// found in the schema. It then build a query object that will take search parameters -// and create lists of objects of that type -func buildQueryObject(client gripql.Client, graph string, objects *objectMap) *graphql.Object { - - queryFields := graphql.Fields{} - // For each of the objects that have been listed in the objectMap build a query entry point - for objName, obj := range objects.objects { - label := obj.Name() - f := &graphql.Field{ - Name: objName, - Type: graphql.NewList(obj), - Args: buildFieldConfigArgument(obj), - Resolve: func(params graphql.ResolveParams) (interface{}, error) { - - q := gripql.V().HasLabel(label) - if id, ok := params.Args[ARG_ID].(string); ok { - //fmt.Printf("Doing %s id=%s query", label, id) - q = gripql.V(id).HasLabel(label) - } - if ids, ok := params.Args[ARG_IDS].([]string); ok { - q = gripql.V(ids...).HasLabel(label) - } - var filter *FilterBuilder - if filterArg, ok := params.Args[ARG_FILTER].(map[string]any); ok { - fmt.Printf("Filter: %#v\n", filterArg) - filter = NewFilterBuilder(filterArg) - } - for key, val := range params.Args { - switch key { - case ARG_ID, ARG_IDS, ARG_LIMIT, ARG_OFFSET, ARG_FILTER: - default: - q = q.Has(gripql.Eq(key, val)) - } - } - //if filter was passed, apply it - if filter != nil { - var err error - q, err = filter.ExtendGrip(q) - if err != nil { - return nil, err - } - } - - q = q.As("f0") - limit := params.Args[ARG_LIMIT].(int) - offset := params.Args[ARG_OFFSET].(int) - q = q.Skip(uint32(offset)).Limit(uint32(limit)) - - rt := &renderTree{ - fields: []string{"f0"}, - parent: map[string]string{}, - fieldName: map[string]string{}, - } - for _, f := range params.Info.FieldASTs { - q = objects.traversalBuild(q, label, f, "f0", rt) - } - - render := map[string]any{} - for _, i := range rt.fields { - render[i+"_gid"] = "$" + i + "._gid" - render[i+"_data"] = "$" + i + "._data" - } - q = q.Render(render) - fmt.Printf("query: %s\n", q.String()) - result, err := client.Traversal(&gripql.GraphQuery{Graph: graph, Query: q.Statements}) - if err != nil { - return nil, err - } - out := []interface{}{} - for r := range result { - values := r.GetRender().GetStructValue().AsMap() - //fmt.Printf("render: %#v\n", values) - data := map[string]map[string]any{} - for _, r := range rt.fields { - v := values[r+"_data"] - if d, ok := v.(map[string]any); ok { - d["id"] = values[r+"_gid"] - if d["id"] != "" { - data[r] = d - } - } - } - for _, r := range rt.fields { - if parent, ok := rt.parent[r]; ok { - fieldName := rt.fieldName[r] - if data[r] != nil { - data[parent][fieldName] = []any{data[r]} - } - } - } - //jtxt, _ := json.MarshalIndent(data["f0"], "", " ") - //fmt.Printf("Data: %s\n", jtxt) - out = append(out, data["f0"]) - //fmt.Printf("ID query traversal: %s\n", r) - } - return out, nil - }, - } - queryFields[objName] = f - } - - queryFields["_aggregation"] = buildAggregationField(client, graph, objects) - - query := graphql.NewObject( - graphql.ObjectConfig{ - Name: "Query", - Fields: queryFields, - }, - ) - fmt.Printf("Query fields: %#v\n", queryFields) - return query -} diff --git a/endpoints/graphqlv2/filter_build.go b/endpoints/graphqlv2/filter_build.go deleted file mode 100644 index 3d19c43d..00000000 --- a/endpoints/graphqlv2/filter_build.go +++ /dev/null @@ -1,78 +0,0 @@ -package main - -import ( - "github.com/bmeg/grip/log" - - "github.com/bmeg/grip/gripql" -) - -type FilterBuilder struct { - filter map[string]any -} - -func NewFilterBuilder(i map[string]any) *FilterBuilder { - return &FilterBuilder{i} -} - -func isFilterEQ(q map[string]any) (any, bool) { - for _, i := range []string{"=", "eq", "EQ"} { - if val, ok := q[i]; ok { - return val, ok - } - } - return nil, false -} - -func isFilterGT(q map[string]any) (any, bool) { - for _, i := range []string{">", "gt", "GT"} { - if val, ok := q[i]; ok { - return val, ok - } - } - return nil, false -} - -func isFilterLT(q map[string]any) (any, bool) { - for _, i := range []string{"<", "lt", "LT"} { - if val, ok := q[i]; ok { - return val, ok - } - } - return nil, false -} - -func fieldMap(s string) string { - if s == "id" { - return "_gid" - } - return s -} - -func (fb *FilterBuilder) ExtendGrip(q *gripql.Query) (*gripql.Query, error) { - if val, ok := isFilterEQ(fb.filter); ok { - if vMap, ok := val.(map[string]any); ok { - for k, v := range vMap { - k = fieldMap(k) - q = q.Has(gripql.Eq(k, v)) - } - } - } - if val, ok := isFilterGT(fb.filter); ok { - if vMap, ok := val.(map[string]any); ok { - for k, v := range vMap { - k = fieldMap(k) - q = q.Has(gripql.Gt(k, v)) - } - } - } - if val, ok := isFilterLT(fb.filter); ok { - if vMap, ok := val.(map[string]any); ok { - for k, v := range vMap { - k = fieldMap(k) - q = q.Has(gripql.Lt(k, v)) - } - } - } - log.Infof("Filter Query %s", q.String()) - return q, nil -} diff --git a/endpoints/graphqlv2/handler.go b/endpoints/graphqlv2/handler.go deleted file mode 100644 index db19dd4a..00000000 --- a/endpoints/graphqlv2/handler.go +++ /dev/null @@ -1,129 +0,0 @@ -/* -GraphQL Web endpoint -*/ - -package main - -import ( - "fmt" - "net/http" - - "github.com/bmeg/grip/gripql" - "github.com/bmeg/grip/log" - "github.com/graphql-go/handler" -) - -// handle the graphql queries for a single endpoint -type graphHandler struct { - graph string - gqlHandler *handler.Handler - timestamp string - client gripql.Client - //schema *gripql.Graph -} - -// Handler is a GraphQL endpoint to query the Grip database -type Handler struct { - handlers map[string]*graphHandler - client gripql.Client -} - -// NewClientHTTPHandler initilizes a new GraphQLHandler -func NewHTTPHandler(client gripql.Client, config map[string]string) (http.Handler, error) { - h := &Handler{ - client: client, - handlers: map[string]*graphHandler{}, - } - return h, nil -} - -// Static HTML that links to Apollo GraphQL query editor -var sandBox = ` -
- -` - -// ServeHTTP responds to HTTP graphql requests -func (gh *Handler) ServeHTTP(writer http.ResponseWriter, request *http.Request) { - //log.Infof("Request for %s", request.URL.Path) - //If no graph provided, return the Query Editor page - if request.URL.Path == "" || request.URL.Path == "/" { - writer.Write([]byte(sandBox)) - return - } - //pathRE := regexp.MustCompile("/(.+)$") - //graphName := pathRE.FindStringSubmatch(request.URL.Path)[1] - graphName := request.URL.Path - var handler *graphHandler - var ok bool - if handler, ok = gh.handlers[graphName]; ok { - //Call the setup function. If nothing has changed it will return without doing anything - err := handler.setup() - if err != nil { - http.Error(writer, fmt.Sprintf("No GraphQL handler found for graph: %s", graphName), http.StatusInternalServerError) - return - } - } else { - //Graph handler was not found, so we'll need to set it up - var err error - handler, err = newGraphHandler(graphName, gh.client) - if err != nil { - http.Error(writer, fmt.Sprintf("No GraphQL handler found for graph: %s", graphName), http.StatusInternalServerError) - return - } - gh.handlers[graphName] = handler - } - if handler != nil && handler.gqlHandler != nil { - handler.gqlHandler.ServeHTTP(writer, request) - } else { - http.Error(writer, fmt.Sprintf("No GraphQL handler found for graph: %s", graphName), http.StatusInternalServerError) - } -} - -// newGraphHandler creates a new graphql handler from schema -func newGraphHandler(graph string, client gripql.Client) (*graphHandler, error) { - o := &graphHandler{ - graph: graph, - client: client, - } - err := o.setup() - if err != nil { - return nil, err - } - return o, nil -} - -// check timestamp to see if schema needs to be updated, and if so -// rebuild graphql schema -func (gh *graphHandler) setup() error { - ts, _ := gh.client.GetTimestamp(gh.graph) - if ts == nil || ts.Timestamp != gh.timestamp { - log.WithFields(log.Fields{"graph": gh.graph}).Info("Reloading GraphQL schema") - schema, err := gh.client.GetSchema(gh.graph) - if err != nil { - log.WithFields(log.Fields{"graph": gh.graph, "error": err}).Error("GetSchema error") - return err - } - gqlSchema, err := buildGraphQLSchema(schema, gh.client, gh.graph) - if err != nil { - log.WithFields(log.Fields{"graph": gh.graph, "error": err}).Error("GraphQL schema build failed") - gh.gqlHandler = nil - gh.timestamp = "" - } else { - log.WithFields(log.Fields{"graph": gh.graph}).Info("Built GraphQL schema") - gh.gqlHandler = handler.New(&handler.Config{ - Schema: gqlSchema, - }) - gh.timestamp = ts.Timestamp - } - } - return nil -} diff --git a/go.mod b/go.mod index 2fa8bf45..cdcd00d7 100644 --- a/go.mod +++ b/go.mod @@ -9,6 +9,8 @@ require ( github.com/akuity/grpc-gateway-client v0.0.0-20231116134900-80c401329778 github.com/antlr/antlr4/runtime/Go/antlr v1.4.10 github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad + github.com/bmeg/jsonschema/v5 v5.3.4-0.20241021223433-465090062767 + github.com/bmeg/jsonschemagraph v0.0.3-0.20241021183544-dce95050d690 github.com/boltdb/bolt v1.3.1 github.com/casbin/casbin/v2 v2.97.0 github.com/cockroachdb/pebble v1.1.1 @@ -17,8 +19,6 @@ require ( github.com/dop251/goja v0.0.0-20240707163329-b1681fb2a2f5 github.com/felixge/httpsnoop v1.0.4 github.com/go-sql-driver/mysql v1.8.1 - github.com/graphql-go/graphql v0.8.0 - github.com/graphql-go/handler v0.2.3 github.com/grpc-ecosystem/go-grpc-middleware v1.4.0 github.com/grpc-ecosystem/grpc-gateway/v2 v2.20.0 github.com/hashicorp/go-multierror v1.1.1 @@ -31,7 +31,6 @@ require ( github.com/kr/pretty v0.3.1 github.com/lib/pq v1.10.9 github.com/logrusorgru/aurora v2.0.3+incompatible - github.com/machinebox/graphql v0.2.2 github.com/mattn/go-sqlite3 v1.14.23 github.com/minio/minio-go/v7 v7.0.73 github.com/mitchellh/hashstructure/v2 v2.0.2 @@ -104,7 +103,6 @@ require ( github.com/klauspost/cpuid/v2 v2.2.8 // indirect github.com/kr/text v0.2.0 // indirect github.com/mailru/easyjson v0.7.7 // indirect - github.com/matryer/is v1.4.0 // indirect github.com/mattn/go-colorable v0.1.13 // indirect github.com/mattn/go-isatty v0.0.20 // indirect github.com/minio/md5-simd v1.1.2 // indirect diff --git a/go.sum b/go.sum index 1915da2b..68a4e739 100644 --- a/go.sum +++ b/go.sum @@ -32,6 +32,10 @@ github.com/beorn7/perks v1.0.1 h1:VlbKKnNfV8bJzeqoa4cOKqO6bYr3WgKZxO8Z16+hsOM= github.com/beorn7/perks v1.0.1/go.mod h1:G2ZrVWU2WbWT9wwq4/hrbKbnv/1ERSJQ0ibhJ6rlkpw= github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad h1:ICgBexeLB7iv/IQz4rsP+MimOXFZUwWSPojEypuOaQ8= github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad/go.mod h1:ft96Irkp72C7ZrUWRenG7LrF0NKMxXdRvsypo5Njhm4= +github.com/bmeg/jsonschema/v5 v5.3.4-0.20241021223433-465090062767 h1:Xxna7pNl+RSeb8Chpo/9kqnCpINE3UYazHAEHQfKPr8= +github.com/bmeg/jsonschema/v5 v5.3.4-0.20241021223433-465090062767/go.mod h1:W6ZrtycDFIco8t+VZvgCgt2mUb+o8Js25o6g+Pe/CHU= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241021183544-dce95050d690 h1:f7blYURrwfFXm2a5Pk8UWVgQ3Hplx6X3/5orm6vArVQ= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241021183544-dce95050d690/go.mod h1:q2uV/fFytbCs5tnoN59Ae6we8L3N2QIZWjdaxnsEKfQ= github.com/boltdb/bolt v1.3.1 h1:JQmyP4ZBrce+ZQu0dY660FMfatumYDLun9hBCUVIkF4= github.com/boltdb/bolt v1.3.1/go.mod h1:clJnj/oiGkjum5o1McbSZDSLxVThjynRyGBgiAx27Ps= github.com/bufbuild/protocompile v0.4.0 h1:LbFKd2XowZvQ/kajzguUp2DC9UEIQhIq77fZZlaQsNA= @@ -178,10 +182,6 @@ github.com/gopherjs/gopherjs v1.17.2 h1:fQnZVsXk8uxXIStYb0N4bGk7jeyTalG/wsZjQ25d github.com/gopherjs/gopherjs v1.17.2/go.mod h1:pRRIvn/QzFLrKfvEz3qUuEhtE/zLCWfreZ6J5gM2i+k= github.com/gorilla/securecookie v1.1.1/go.mod h1:ra0sb63/xPlUeL+yeDciTfxMRAA+MP+HVt/4epWDjd4= github.com/gorilla/sessions v1.2.1/go.mod h1:dk2InVEVJ0sfLlnXv9EAgkf6ecYs/i80K/zI+bUmuGM= -github.com/graphql-go/graphql v0.8.0 h1:JHRQMeQjofwqVvGwYnr8JnPTY0AxgVy1HpHSGPLdH0I= -github.com/graphql-go/graphql v0.8.0/go.mod h1:nKiHzRM0qopJEwCITUuIsxk9PlVlwIiiI8pnJEhordQ= -github.com/graphql-go/handler v0.2.3 h1:CANh8WPnl5M9uA25c2GBhPqJhE53Fg0Iue/fRNla71E= -github.com/graphql-go/handler v0.2.3/go.mod h1:leLF6RpV5uZMN1CdImAxuiayrYYhOk33bZciaUGaXeU= github.com/grpc-ecosystem/go-grpc-middleware v1.4.0 h1:UH//fgunKIs4JdUbpDl1VZCDaL56wXCB/5+wF6uHfaI= github.com/grpc-ecosystem/go-grpc-middleware v1.4.0/go.mod h1:g5qyo/la0ALbONm6Vbp88Yd8NsDy6rZz+RcrMPxvld8= github.com/grpc-ecosystem/grpc-gateway/v2 v2.20.0 h1:bkypFPDjIYGfCYD5mRBvpqxfYX1YCS1PXdKYWi8FsN0= @@ -259,14 +259,10 @@ github.com/lib/pq v1.10.9 h1:YXG7RB+JIjhP29X+OtkiDnYaXQwpS4JEWq7dtCCRUEw= github.com/lib/pq v1.10.9/go.mod h1:AlVN5x4E4T544tWzH6hKfbfQvm3HdbOxrmggDNAPY9o= github.com/logrusorgru/aurora v2.0.3+incompatible h1:tOpm7WcpBTn4fjmVfgpQq0EfczGlG91VSDkswnjF5A8= github.com/logrusorgru/aurora v2.0.3+incompatible/go.mod h1:7rIyQOR62GCctdiQpZ/zOJlFyk6y+94wXzv6RNZgaR4= -github.com/machinebox/graphql v0.2.2 h1:dWKpJligYKhYKO5A2gvNhkJdQMNZeChZYyBbrZkBZfo= -github.com/machinebox/graphql v0.2.2/go.mod h1:F+kbVMHuwrQ5tYgU9JXlnskM8nOaFxCAEolaQybkjWA= github.com/magiconair/properties v1.8.0/go.mod h1:PppfXfuXeibc/6YijjN8zIbojt8czPbwD3XqdrwzmxQ= github.com/mailru/easyjson v0.7.1/go.mod h1:KAzv3t3aY1NaHWoQz1+4F1ccyAH66Jk7yos7ldAVICs= github.com/mailru/easyjson v0.7.7 h1:UGYAvKxe3sBsEDzO8ZeWOSlIQfWFlxbzLZe7hwFURr0= github.com/mailru/easyjson v0.7.7/go.mod h1:xzfreul335JAWq5oZzymOObrkdz5UnU4kGfJJLY9Nlc= -github.com/matryer/is v1.4.0 h1:sosSmIWwkYITGrxZ25ULNDeKiMNzFSr4V/eqBQP0PeE= -github.com/matryer/is v1.4.0/go.mod h1:8I/i5uYgLzgsgEloJE1U6xx5HkBQpAZvepWuujKwMRU= github.com/mattn/go-colorable v0.1.9/go.mod h1:u6P/XSegPjTcexA+o6vUJrdnUu04hMope9wVRipJSqc= github.com/mattn/go-colorable v0.1.12/go.mod h1:u5H1YNBxpqRaxsYJYSkiCWKzEfiAb1Gb520KVy5xxl4= github.com/mattn/go-colorable v0.1.13 h1:fFA4WZxdEF4tXPZVKMLwD8oUnCTTo08duU7wxecdEvA= @@ -347,6 +343,8 @@ github.com/rs/xid v1.5.0 h1:mKX4bl4iPYJtEIxp6CYiUuLQ/8DYMoz0PUdtGgMFRVc= github.com/rs/xid v1.5.0/go.mod h1:trrq9SKmegXys3aeAKXMUTdJsYXVwGY3RLcfgqegfbg= github.com/russross/blackfriday v1.5.2/go.mod h1:JO/DiYxRf+HjHt06OyowR9PTA263kcR/rfWxYHBV53g= github.com/russross/blackfriday/v2 v2.1.0/go.mod h1:+Rmxgy9KzJVeS9/2gXHxylqXiyQDYRxCVz55jmeOWTM= +github.com/santhosh-tekuri/jsonschema/v5 v5.3.1 h1:lZUw3E0/J3roVtGQ+SCrUrg3ON6NgVqpn3+iol9aGu4= +github.com/santhosh-tekuri/jsonschema/v5 v5.3.1/go.mod h1:uToXkOrWAZ6/Oc07xWQrPOhJotwFIyu2bBVN41fcDUY= github.com/sclevine/agouti v3.0.0+incompatible/go.mod h1:b4WX9W9L1sfQKXeJf1mUTLZKJ48R1S7H23Ji7oFO5Bw= github.com/segmentio/ksuid v1.0.4 h1:sBo2BdShXjmcugAMwjugoGUdUV0pcxY5mW4xKRn3v4c= github.com/segmentio/ksuid v1.0.4/go.mod h1:/XUiZBD3kVx5SmUOl55voK5yeAbBNNIed+2O73XgrPE= diff --git a/gripql/graph.go b/gripql/graph.go deleted file mode 100644 index 777a3f4a..00000000 --- a/gripql/graph.go +++ /dev/null @@ -1,193 +0,0 @@ -package gripql - -import ( - "encoding/json" - "fmt" - "io/ioutil" - "path/filepath" - - "google.golang.org/protobuf/encoding/protojson" - "sigs.k8s.io/yaml" -) - -// ParseYAMLGraph parses a YAML doc into the given Graph instance. -func ParseYAMLGraph(raw []byte) (*Graph, error) { - tmp := map[string]interface{}{} - err := yaml.Unmarshal(raw, &tmp) - if err != nil { - return nil, err - } - part, err := json.Marshal(tmp) - if err != nil { - return nil, err - } - g := &Graph{} - err = protojson.Unmarshal(part, g) - if err != nil { - return nil, err - } - return g, nil -} - -func ParseYAMLGraphPath(relpath string) (*Graph, error) { - // Try to get absolute path. If it fails, fall back to relative path. - path, err := filepath.Abs(relpath) - if err != nil { - path = relpath - } - // Read file - source, err := ioutil.ReadFile(path) - if err != nil { - return nil, fmt.Errorf("failed to read graph at path %s: \n%v", path, err) - } - return ParseYAMLGraph(source) -} - -// ParseYAMLGraph parses a YAML doc into the given Graph instance. -func ParseYAMLGraphs(raw []byte) ([]*Graph, error) { - graphs := []*Graph{} - tmp := []interface{}{} - err := yaml.Unmarshal(raw, &tmp) - if err != nil { - var tmp2 interface{} - err := yaml.Unmarshal(raw, &tmp2) - if err != nil { - return nil, err - } - tmp = append(tmp, tmp2) - } - for _, s := range tmp { - part, err := json.Marshal(s) - if err != nil { - return nil, err - } - g := &Graph{} - err = protojson.Unmarshal(part, g) - if err != nil { - return nil, err - } - if g.Graph == "" { - return nil, fmt.Errorf("missing graph name") - } - graphs = append(graphs, g) - } - return graphs, nil -} - -// ParseJSONGraph parses a JSON doc into the given Graph instance. -func ParseJSONGraphs(raw []byte) ([]*Graph, error) { - graphs := []*Graph{} - tmp := []interface{}{} - err := json.Unmarshal(raw, &tmp) - if err != nil { - var tmp2 interface{} - err := json.Unmarshal(raw, &tmp2) - if err != nil { - return nil, err - } - tmp = append(tmp, tmp2) - } - for _, s := range tmp { - part, err := json.Marshal(s) - if err != nil { - return nil, err - } - g := &Graph{} - err = protojson.Unmarshal(part, g) - if err != nil { - return nil, err - } - if g.Graph == "" { - return nil, fmt.Errorf("missing graph name") - } - graphs = append(graphs, g) - } - return graphs, nil -} - -// ParseGraphYAMLFile parses a graph file, which is formatted in YAML, -// and returns a slice of graph objects. -func parseGraphFile(relpath string, format string) ([]*Graph, error) { - var graphs []*Graph - var err error - - if relpath == "" { - return nil, fmt.Errorf("path is empty") - } - - // Try to get absolute path. If it fails, fall back to relative path. - path, err := filepath.Abs(relpath) - if err != nil { - path = relpath - } - - // Read file - source, err := ioutil.ReadFile(path) - if err != nil { - return nil, fmt.Errorf("failed to read graph at path %s: \n%v", path, err) - } - - // Parse file contents - switch format { - case "yaml": - graphs, err = ParseYAMLGraphs(source) - case "json": - graphs, err = ParseJSONGraphs(source) - default: - err = fmt.Errorf("unknown file format: %s", format) - } - if err != nil { - return nil, fmt.Errorf("failed to parse graph at path %s: \n%v", path, err) - } - return graphs, nil -} - -// ParseYAMLGraphFile parses a graph file, which is formatted in YAML, -// and returns a slice of graph objects. -func ParseYAMLGraphsFile(relpath string) ([]*Graph, error) { - return parseGraphFile(relpath, "yaml") -} - -// ParseJSONGraphFile parses a graph file, which is formatted in JSON, -// and returns a slice of graph objects. -func ParseJSONGraphsFile(relpath string) ([]*Graph, error) { - return parseGraphFile(relpath, "json") -} - -// GraphToYAMLString returns a graph formatted as a YAML string -func GraphToYAMLString(graph *Graph) (string, error) { - out, err := protojson.Marshal(graph) - if err != nil { - return "", fmt.Errorf("failed to marshal graph: %v", err) - } - sb, err := yaml.JSONToYAML(out) - if err != nil { - return "", fmt.Errorf("failed to marshal graph: %v", err) - } - return string(sb), nil -} - -// GraphToJSONString returns a graph formatted as a JSON string -func GraphToJSONString(graph *Graph) (string, error) { - m := protojson.MarshalOptions{ - UseEnumNumbers: false, - EmitUnpopulated: false, - Indent: " ", - UseProtoNames: false, - } - txt := m.Format(graph) - return txt, nil -} - -func GraphMapToProto(data map[string]interface{}) (*Graph, error) { - part, err := json.Marshal(data) - if err != nil { - return nil, err - } - g := &Graph{} - err = protojson.Unmarshal(part, g) - if err != nil { - return nil, err - } - return g, nil -} diff --git a/schema/graph.go b/schema/graph.go new file mode 100644 index 00000000..3b8d8d55 --- /dev/null +++ b/schema/graph.go @@ -0,0 +1,304 @@ +package schema + +import ( + "encoding/json" + "fmt" + "io/ioutil" + "path/filepath" + + "github.com/bmeg/grip/log" + + "slices" + + "github.com/bmeg/grip/gripql" + "github.com/bmeg/jsonschema/v5" + "github.com/bmeg/jsonschemagraph/compile" + "github.com/bmeg/jsonschemagraph/graph" + "google.golang.org/protobuf/encoding/protojson" + "sigs.k8s.io/yaml" +) + +func ParseSchema(schema *jsonschema.Schema) any { + /* This function traverses through the compiled json schema constructing a simplified + schema that consists of only golang primitive types */ + + //log.Infof("ENTERING FLATTEN SCHEMA %#v\n", schema) + result := make(map[string]any) + if schema.Ref != nil && schema.Ref.Title != "" { + if slices.Contains([]string{"Reference", "FHIRPrimitiveExtension", "Extension", "Link"}, schema.Ref.Title) { + return nil + } + return ParseSchema(schema.Ref) + } + if schema.Items2020 != nil { + if schema.Items2020.Ref != nil && + schema.Items2020.Ref.Title != "" && + slices.Contains([]string{"Reference", "FHIRPrimitiveExtension", "Extension", "Link", "Link Description Object"}, schema.Items2020.Ref.Title) { + return nil + } + if schema.Types[0] == "array" { + return []any{ParseSchema(schema.Items2020)} + } + return ParseSchema(schema.Items2020) + } + + if len(schema.Properties) > 0 { + for key, property := range schema.Properties { + if val := ParseSchema(property); val != nil { + result[key] = val + } + } + return result + } + if schema.AnyOf != nil { + return nil + /* fhir_comments not implemented + for _, val := range schema.AnyOf { + return ParseSchema(val) + }*/ + } + if schema.Types != nil { + return schema.Types[0] + } + return nil +} + +func ParseJSONSchemaGraphs(relpath string) ([]*gripql.Graph, error) { + graphs := []*gripql.Graph{} + + // register schema extension and compile schemas + compiler := jsonschema.NewCompiler() + compiler.ExtractAnnotations = true + compiler.RegisterExtension(compile.GraphExtensionTag, compile.GraphExtMeta, compile.GraphExtCompiler{}) + out := graph.GraphSchema{Classes: map[string]*jsonschema.Schema{}, Compiler: compiler} + if sch, err := compiler.Compile(relpath); err == nil { + for _, obj := range graph.ObjectScan(sch) { + if obj.Title != "" { + out.Classes[obj.Title] = obj + } + } + } + + expanded := make(map[string]any) + for key, value := range out.GetClass("Observation").Properties { + // Removing FHIRPrimitiveExtension, but it clutters up the schemas alot. + if value.Ref != nil && value.Ref.Title != "" && slices.Contains([]string{"Reference", "FHIRPrimitiveExtension", "Extension", "Link"}, value.Ref.Title) { + continue + } + flattened_values := ParseSchema(value) + //log.Info("FLATTENED VALUES: ", flattened_values) + switch flattened_values.(type) { + case string: + expanded[key] = flattened_values.(string) + case int: + expanded[key] = flattened_values.(int) + case map[string]any: + expanded[key] = flattened_values.(map[string]any) + case []any: + expanded[key] = flattened_values.([]any) + } + } + + fmt.Println("EXPANDED: ", expanded) + expandedJSON, err := json.MarshalIndent(expanded, "", " ") + if err != nil { + log.Errorf("Failed to marshal expanded schema: %v", err) + } + log.Info(string(expandedJSON)) + + return graphs, nil +} + +func ParseYAMLSchemaGraphs(source []byte) ([]*gripql.Graph, error) { + return nil, nil +} + +// ParseYAMLGraph parses a YAML doc into the given Graph instance. +func ParseYAMLGraph(raw []byte) (*gripql.Graph, error) { + tmp := map[string]interface{}{} + err := yaml.Unmarshal(raw, &tmp) + if err != nil { + return nil, err + } + part, err := json.Marshal(tmp) + if err != nil { + return nil, err + } + g := &gripql.Graph{} + err = protojson.Unmarshal(part, g) + if err != nil { + return nil, err + } + return g, nil +} + +func ParseYAMLGraphPath(relpath string) (*gripql.Graph, error) { + // Try to get absolute path. If it fails, fall back to relative path. + path, err := filepath.Abs(relpath) + if err != nil { + path = relpath + } + // Read file + source, err := ioutil.ReadFile(path) + if err != nil { + return nil, fmt.Errorf("failed to read graph at path %s: \n%v", path, err) + } + return ParseYAMLGraph(source) +} + +// ParseYAMLGraph parses a YAML doc into the given Graph instance. +func ParseYAMLGraphs(raw []byte) ([]*gripql.Graph, error) { + graphs := []*gripql.Graph{} + tmp := []interface{}{} + err := yaml.Unmarshal(raw, &tmp) + if err != nil { + var tmp2 interface{} + err := yaml.Unmarshal(raw, &tmp2) + if err != nil { + return nil, err + } + tmp = append(tmp, tmp2) + } + for _, s := range tmp { + part, err := json.Marshal(s) + if err != nil { + return nil, err + } + g := &gripql.Graph{} + err = protojson.Unmarshal(part, g) + if err != nil { + return nil, err + } + if g.Graph == "" { + return nil, fmt.Errorf("missing graph name") + } + graphs = append(graphs, g) + } + return graphs, nil +} + +// ParseJSONGraph parses a JSON doc into the given Graph instance. +func ParseJSONGraphs(raw []byte) ([]*gripql.Graph, error) { + graphs := []*gripql.Graph{} + tmp := []interface{}{} + err := json.Unmarshal(raw, &tmp) + if err != nil { + var tmp2 interface{} + err := json.Unmarshal(raw, &tmp2) + if err != nil { + return nil, err + } + tmp = append(tmp, tmp2) + } + for _, s := range tmp { + part, err := json.Marshal(s) + if err != nil { + return nil, err + } + g := &gripql.Graph{} + err = protojson.Unmarshal(part, g) + if err != nil { + return nil, err + } + if g.Graph == "" { + return nil, fmt.Errorf("missing graph name") + } + graphs = append(graphs, g) + } + return graphs, nil +} + +// ParseGraphYAMLFile parses a graph file, which is formatted in YAML, +// and returns a slice of graph objects. +func parseGraphFile(relpath string, format string) ([]*gripql.Graph, error) { + var graphs []*gripql.Graph + var err error + + if relpath == "" { + return nil, fmt.Errorf("path is empty") + } + + // Try to get absolute path. If it fails, fall back to relative path. + path, err := filepath.Abs(relpath) + if err != nil { + path = relpath + } + + // Read file + source, err := ioutil.ReadFile(path) + if err != nil { + return nil, fmt.Errorf("failed to read graph at path %s: \n%v", path, err) + } + + // Parse file contents + switch format { + case "yaml": + graphs, err = ParseYAMLGraphs(source) + case "json": + graphs, err = ParseJSONGraphs(source) + case "jsonSchema": + graphs, err = ParseJSONSchemaGraphs(relpath) + case "yamlSchema": + graphs, err = ParseYAMLSchemaGraphs(source) + default: + err = fmt.Errorf("unknown file format: %s", format) + } + if err != nil { + return nil, fmt.Errorf("failed to parse graph at path %s: \n%v", path, err) + } + return graphs, nil +} + +// ParseYAMLGraphFile parses a graph file, which is formatted in YAML, +// and returns a slice of graph objects. +func ParseYAMLGraphsFile(relpath string) ([]*gripql.Graph, error) { + return parseGraphFile(relpath, "yaml") +} + +// ParseJSONGraphFile parses a graph file, which is formatted in JSON, +// and returns a slice of graph objects. +func ParseJSONGraphsFile(relpath string) ([]*gripql.Graph, error) { + return parseGraphFile(relpath, "json") +} + +func ParseJSONSchemaGraphsFile(relpath string) ([]*gripql.Graph, error) { + return parseGraphFile(relpath, "jsonSchema") +} + +// GraphToYAMLString returns a graph formatted as a YAML string +func GraphToYAMLString(graph *gripql.Graph) (string, error) { + out, err := protojson.Marshal(graph) + if err != nil { + return "", fmt.Errorf("failed to marshal graph: %v", err) + } + sb, err := yaml.JSONToYAML(out) + if err != nil { + return "", fmt.Errorf("failed to marshal graph: %v", err) + } + return string(sb), nil +} + +// GraphToJSONString returns a graph formatted as a JSON string +func GraphToJSONString(graph *gripql.Graph) (string, error) { + m := protojson.MarshalOptions{ + UseEnumNumbers: false, + EmitUnpopulated: false, + Indent: " ", + UseProtoNames: false, + } + txt := m.Format(graph) + return txt, nil +} + +func GraphMapToProto(data map[string]interface{}) (*gripql.Graph, error) { + part, err := json.Marshal(data) + if err != nil { + return nil, err + } + g := &gripql.Graph{} + err = protojson.Unmarshal(part, g) + if err != nil { + return nil, err + } + return g, nil +} diff --git a/gripql/graph_test.go b/schema/graph_test.go similarity index 99% rename from gripql/graph_test.go rename to schema/graph_test.go index bf7c2eef..bb828762 100644 --- a/gripql/graph_test.go +++ b/schema/graph_test.go @@ -1,4 +1,4 @@ -package gripql +package schema import ( "reflect" diff --git a/gripql/schema/scan.go b/schema/scan.go similarity index 100% rename from gripql/schema/scan.go rename to schema/scan.go From f9cf8f4c753e9eb7347c11ba60fb4574a73c4e32 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Tue, 22 Oct 2024 16:19:59 -0700 Subject: [PATCH 02/35] Add support for extensions --- schema/graph.go | 29 ++++++++++++++++++++++++----- 1 file changed, 24 insertions(+), 5 deletions(-) diff --git a/schema/graph.go b/schema/graph.go index 3b8d8d55..fbd5c7bd 100644 --- a/schema/graph.go +++ b/schema/graph.go @@ -18,6 +18,21 @@ import ( "sigs.k8s.io/yaml" ) +func ConvertToGripqlType(field string) string { + switch field { + case "string": + return gripql.FieldType_STRING.String() + case "integer": + return gripql.FieldType_NUMERIC.String() + case "number": + return gripql.FieldType_NUMERIC.String() + case "boolean": + return gripql.FieldType_BOOL.String() + default: + return gripql.FieldType_UNKNOWN.String() + } +} + func ParseSchema(schema *jsonschema.Schema) any { /* This function traverses through the compiled json schema constructing a simplified schema that consists of only golang primitive types */ @@ -25,7 +40,8 @@ func ParseSchema(schema *jsonschema.Schema) any { //log.Infof("ENTERING FLATTEN SCHEMA %#v\n", schema) result := make(map[string]any) if schema.Ref != nil && schema.Ref.Title != "" { - if slices.Contains([]string{"Reference", "FHIRPrimitiveExtension", "Extension", "Link"}, schema.Ref.Title) { + // Primitive extensions are currently not supported. + if slices.Contains([]string{"Reference", "Link", "FHIRPrimitiveExtension"}, schema.Ref.Title) { return nil } return ParseSchema(schema.Ref) @@ -33,7 +49,7 @@ func ParseSchema(schema *jsonschema.Schema) any { if schema.Items2020 != nil { if schema.Items2020.Ref != nil && schema.Items2020.Ref.Title != "" && - slices.Contains([]string{"Reference", "FHIRPrimitiveExtension", "Extension", "Link", "Link Description Object"}, schema.Items2020.Ref.Title) { + slices.Contains([]string{"Reference", "Link", "Link Description Object", "FHIRPrimitiveExtension"}, schema.Items2020.Ref.Title) { return nil } if schema.Types[0] == "array" { @@ -44,6 +60,10 @@ func ParseSchema(schema *jsonschema.Schema) any { if len(schema.Properties) > 0 { for key, property := range schema.Properties { + // Not going to support inifinite nested extensions even though FHIR does. + if key == "extension" || key == "modifierExtension" { + continue + } if val := ParseSchema(property); val != nil { result[key] = val } @@ -58,7 +78,7 @@ func ParseSchema(schema *jsonschema.Schema) any { }*/ } if schema.Types != nil { - return schema.Types[0] + return ConvertToGripqlType(schema.Types[0]) } return nil } @@ -81,8 +101,7 @@ func ParseJSONSchemaGraphs(relpath string) ([]*gripql.Graph, error) { expanded := make(map[string]any) for key, value := range out.GetClass("Observation").Properties { - // Removing FHIRPrimitiveExtension, but it clutters up the schemas alot. - if value.Ref != nil && value.Ref.Title != "" && slices.Contains([]string{"Reference", "FHIRPrimitiveExtension", "Extension", "Link"}, value.Ref.Title) { + if value.Ref != nil && value.Ref.Title != "" && slices.Contains([]string{"Reference", "Link", "FHIRPrimitiveExtension"}, value.Ref.Title) { continue } flattened_values := ParseSchema(value) From 9a800dcf82cf143775948cc6aefe935b147d9ab7 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Wed, 23 Oct 2024 10:55:10 -0700 Subject: [PATCH 03/35] cleanup vertex generation --- cmd/schema/main.go | 25 +++++++++-- schema/graph.go | 103 +++++++++++++++++++++++++-------------------- 2 files changed, 79 insertions(+), 49 deletions(-) diff --git a/cmd/schema/main.go b/cmd/schema/main.go index 73da4424..669b9e6d 100644 --- a/cmd/schema/main.go +++ b/cmd/schema/main.go @@ -17,7 +17,9 @@ var host = "localhost:8202" var yaml = false var jsonFile string var yamlFile string +var graphName string var jsonSchemaFile string +var yamlSchemaDir string var sampleCount uint32 = 50 var excludeLabels []string @@ -67,7 +69,7 @@ var postCmd = &cobra.Command{ Long: ``, Args: cobra.NoArgs, RunE: func(cmd *cobra.Command, args []string) error { - if jsonFile == "" && yamlFile == "" && jsonSchemaFile == "" { + if jsonFile == "" && yamlFile == "" && jsonSchemaFile == "" && yamlSchemaDir == "" { return fmt.Errorf("no schema file was provided") } @@ -123,9 +125,9 @@ var postCmd = &cobra.Command{ } } - if jsonSchemaFile != "" { + if jsonSchemaFile != "" && graphName != "" { log.Infof("Loading Json Schema file: %s", jsonSchemaFile) - graphs, err := schema.ParseJSONSchemaGraphsFile(jsonSchemaFile) + graphs, err := schema.ParseJSONSchemaGraphsFile(jsonSchemaFile, graphName) if err != nil { return err } @@ -138,7 +140,22 @@ var postCmd = &cobra.Command{ } } + if yamlSchemaDir != "" && graphName != "" { + log.Infof("Loading Yaml Schema dir: %s", yamlSchemaDir) + graphs, err := schema.ParseYAMLSchemaGraphsFiles(yamlSchemaDir, graphName) + if err != nil { + log.Info("HELLO ERROR HERE: ", err) + return err + } + for _, g := range graphs { + err := conn.AddSchema(g) + if err != nil { + return err + } + log.Debug("Posted schema: %s", g.Graph) + } + } return nil }, } @@ -152,7 +169,9 @@ func init() { pflags.StringVar(&host, "host", host, "grip server url") pflags.StringVar(&jsonFile, "json", "", "JSON graph file") pflags.StringVar(&yamlFile, "yaml", "", "YAML graph file") + pflags.StringVar(&graphName, "graphName", "", "Name of schemaGraph") pflags.StringVar(&jsonSchemaFile, "jsonSchema", "", "Json Schema") + pflags.StringVar(&yamlSchemaDir, "yamlSchemaDir", "", "Name of YAML schemas dir") Cmd.AddCommand(getCmd) Cmd.AddCommand(postCmd) diff --git a/schema/graph.go b/schema/graph.go index fbd5c7bd..84d81ce0 100644 --- a/schema/graph.go +++ b/schema/graph.go @@ -4,6 +4,7 @@ import ( "encoding/json" "fmt" "io/ioutil" + "os" "path/filepath" "github.com/bmeg/grip/log" @@ -12,7 +13,6 @@ import ( "github.com/bmeg/grip/gripql" "github.com/bmeg/jsonschema/v5" - "github.com/bmeg/jsonschemagraph/compile" "github.com/bmeg/jsonschemagraph/graph" "google.golang.org/protobuf/encoding/protojson" "sigs.k8s.io/yaml" @@ -83,52 +83,57 @@ func ParseSchema(schema *jsonschema.Schema) any { return nil } -func ParseJSONSchemaGraphs(relpath string) ([]*gripql.Graph, error) { +func ParseSchemaGraphs(relpath string, graphName string) ([]*gripql.Graph, error) { graphs := []*gripql.Graph{} - - // register schema extension and compile schemas - compiler := jsonschema.NewCompiler() - compiler.ExtractAnnotations = true - compiler.RegisterExtension(compile.GraphExtensionTag, compile.GraphExtMeta, compile.GraphExtCompiler{}) - out := graph.GraphSchema{Classes: map[string]*jsonschema.Schema{}, Compiler: compiler} - if sch, err := compiler.Compile(relpath); err == nil { - for _, obj := range graph.ObjectScan(sch) { - if obj.Title != "" { - out.Classes[obj.Title] = obj - } - } + out, err := graph.Load(relpath) + if err != nil { + log.Info("AN ERROR HAS OCCURED: ", err) + return nil, err } - - expanded := make(map[string]any) - for key, value := range out.GetClass("Observation").Properties { - if value.Ref != nil && value.Ref.Title != "" && slices.Contains([]string{"Reference", "Link", "FHIRPrimitiveExtension"}, value.Ref.Title) { - continue - } - flattened_values := ParseSchema(value) - //log.Info("FLATTENED VALUES: ", flattened_values) - switch flattened_values.(type) { - case string: - expanded[key] = flattened_values.(string) - case int: - expanded[key] = flattened_values.(int) - case map[string]any: - expanded[key] = flattened_values.(map[string]any) - case []any: - expanded[key] = flattened_values.([]any) + graphSchema := map[string]any{ + "vertices": []map[string]any{}, + "edges": []map[string]any{}, + "graph": graphName, + } + for _, class := range out.Classes { + vertexData := make(map[string]any) + for key, sch := range class.Properties { + if sch.Ref != nil && sch.Ref.Title != "" && slices.Contains([]string{"Reference", "Link", "FHIRPrimitiveExtension"}, sch.Ref.Title) { + continue + } + vertVal := ParseSchema(sch) + //log.Info("FLATTENED VALUES: ", flattened_values) + switch vertVal.(type) { + case string: + vertexData[key] = vertVal.(string) + case int: + vertexData[key] = vertVal.(int) + case map[string]any: + vertexData[key] = vertVal.(map[string]any) + case []any: + vertexData[key] = vertVal.([]any) + } } + vertex := map[string]any{"data": vertexData, "label": "Vertex", "gid": class.Title} + graphSchema["vertices"] = append(graphSchema["vertices"].([]map[string]any), vertex) } - fmt.Println("EXPANDED: ", expanded) - expandedJSON, err := json.MarshalIndent(expanded, "", " ") + expandedJSON, err := json.Marshal(graphSchema) if err != nil { log.Errorf("Failed to marshal expanded schema: %v", err) } - log.Info(string(expandedJSON)) + // For Testing purposes + err = os.WriteFile("new_dicts.json", expandedJSON, 0644) + if err != nil { + log.Errorf("Failed to write to file: %v", err) + } + + log.Info("Posted Schema", string(expandedJSON)) return graphs, nil } -func ParseYAMLSchemaGraphs(source []byte) ([]*gripql.Graph, error) { +func ParseYAMLSchemaGraphs(source []byte, graphName string) ([]*gripql.Graph, error) { return nil, nil } @@ -229,7 +234,7 @@ func ParseJSONGraphs(raw []byte) ([]*gripql.Graph, error) { // ParseGraphYAMLFile parses a graph file, which is formatted in YAML, // and returns a slice of graph objects. -func parseGraphFile(relpath string, format string) ([]*gripql.Graph, error) { +func parseGraphFile(relpath string, format string, graphName string) ([]*gripql.Graph, error) { var graphs []*gripql.Graph var err error @@ -243,10 +248,12 @@ func parseGraphFile(relpath string, format string) ([]*gripql.Graph, error) { path = relpath } - // Read file - source, err := ioutil.ReadFile(path) - if err != nil { - return nil, fmt.Errorf("failed to read graph at path %s: \n%v", path, err) + var source []byte + if format == "yaml" || format == "json" { + source, err = ioutil.ReadFile(path) + if err != nil { + return nil, fmt.Errorf("failed to read graph at path %s: \n%v", path, err) + } } // Parse file contents @@ -256,9 +263,9 @@ func parseGraphFile(relpath string, format string) ([]*gripql.Graph, error) { case "json": graphs, err = ParseJSONGraphs(source) case "jsonSchema": - graphs, err = ParseJSONSchemaGraphs(relpath) + graphs, err = ParseSchemaGraphs(path, graphName) case "yamlSchema": - graphs, err = ParseYAMLSchemaGraphs(source) + graphs, err = ParseSchemaGraphs(relpath, graphName) default: err = fmt.Errorf("unknown file format: %s", format) } @@ -271,17 +278,21 @@ func parseGraphFile(relpath string, format string) ([]*gripql.Graph, error) { // ParseYAMLGraphFile parses a graph file, which is formatted in YAML, // and returns a slice of graph objects. func ParseYAMLGraphsFile(relpath string) ([]*gripql.Graph, error) { - return parseGraphFile(relpath, "yaml") + return parseGraphFile(relpath, "yaml", "") } // ParseJSONGraphFile parses a graph file, which is formatted in JSON, // and returns a slice of graph objects. func ParseJSONGraphsFile(relpath string) ([]*gripql.Graph, error) { - return parseGraphFile(relpath, "json") + return parseGraphFile(relpath, "json", "") +} + +func ParseJSONSchemaGraphsFile(relpath string, graphName string) ([]*gripql.Graph, error) { + return parseGraphFile(relpath, "jsonSchema", graphName) } -func ParseJSONSchemaGraphsFile(relpath string) ([]*gripql.Graph, error) { - return parseGraphFile(relpath, "jsonSchema") +func ParseYAMLSchemaGraphsFiles(relpath string, graphName string) ([]*gripql.Graph, error) { + return parseGraphFile(relpath, "jsonSchema", graphName) } // GraphToYAMLString returns a graph formatted as a YAML string From b9da7becfbd5746c2115c7a8d3d387d5d888ca1f Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Wed, 23 Oct 2024 15:46:20 -0700 Subject: [PATCH 04/35] Add edge generation --- go.mod | 3 ++- go.sum | 4 ++++ schema/graph.go | 44 +++++++++++++++++++++++++++++++------------- 3 files changed, 37 insertions(+), 14 deletions(-) diff --git a/go.mod b/go.mod index cdcd00d7..e66cfb48 100644 --- a/go.mod +++ b/go.mod @@ -10,7 +10,7 @@ require ( github.com/antlr/antlr4/runtime/Go/antlr v1.4.10 github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad github.com/bmeg/jsonschema/v5 v5.3.4-0.20241021223433-465090062767 - github.com/bmeg/jsonschemagraph v0.0.3-0.20241021183544-dce95050d690 + github.com/bmeg/jsonschemagraph v0.0.3-0.20241023220331-fc0d420f80de github.com/boltdb/bolt v1.3.1 github.com/casbin/casbin/v2 v2.97.0 github.com/cockroachdb/pebble v1.1.1 @@ -59,6 +59,7 @@ require ( github.com/DataDog/zstd v1.5.5 // indirect github.com/alevinval/sse v1.0.2 // indirect github.com/beorn7/perks v1.0.1 // indirect + github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc // indirect github.com/casbin/govaluate v1.2.0 // indirect github.com/cespare/xxhash v1.1.0 // indirect github.com/cespare/xxhash/v2 v2.3.0 // indirect diff --git a/go.sum b/go.sum index 68a4e739..28f7c831 100644 --- a/go.sum +++ b/go.sum @@ -30,12 +30,16 @@ github.com/aws/aws-sdk-go v1.29.11/go.mod h1:1KvfttTE3SPKMpo8g2c6jL3ZKfXtFvKscTg github.com/benbjohnson/clock v1.1.0/go.mod h1:J11/hYXuz8f4ySSvYwY0FKfm+ezbsZBKZxNJlLklBHA= github.com/beorn7/perks v1.0.1 h1:VlbKKnNfV8bJzeqoa4cOKqO6bYr3WgKZxO8Z16+hsOM= github.com/beorn7/perks v1.0.1/go.mod h1:G2ZrVWU2WbWT9wwq4/hrbKbnv/1ERSJQ0ibhJ6rlkpw= +github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc h1:/0v/ZcXYjGs44InmjECrls31onIbVKVu1Q/E2cmnCEU= +github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc/go.mod h1:hoSeuZtqe58ANXHuWpeODx4bDHGV36QXlCs1yrUvK6M= github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad h1:ICgBexeLB7iv/IQz4rsP+MimOXFZUwWSPojEypuOaQ8= github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad/go.mod h1:ft96Irkp72C7ZrUWRenG7LrF0NKMxXdRvsypo5Njhm4= github.com/bmeg/jsonschema/v5 v5.3.4-0.20241021223433-465090062767 h1:Xxna7pNl+RSeb8Chpo/9kqnCpINE3UYazHAEHQfKPr8= github.com/bmeg/jsonschema/v5 v5.3.4-0.20241021223433-465090062767/go.mod h1:W6ZrtycDFIco8t+VZvgCgt2mUb+o8Js25o6g+Pe/CHU= github.com/bmeg/jsonschemagraph v0.0.3-0.20241021183544-dce95050d690 h1:f7blYURrwfFXm2a5Pk8UWVgQ3Hplx6X3/5orm6vArVQ= github.com/bmeg/jsonschemagraph v0.0.3-0.20241021183544-dce95050d690/go.mod h1:q2uV/fFytbCs5tnoN59Ae6we8L3N2QIZWjdaxnsEKfQ= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241023220331-fc0d420f80de h1:ruds+GrDg5RyDf8b1cSBnmk4zajcvkXBeAfPzV9my0I= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241023220331-fc0d420f80de/go.mod h1:nqCeZ/A/5zbxrwO5IBF2+xLdaP1sjtaCckmdQIo6lJM= github.com/boltdb/bolt v1.3.1 h1:JQmyP4ZBrce+ZQu0dY660FMfatumYDLun9hBCUVIkF4= github.com/boltdb/bolt v1.3.1/go.mod h1:clJnj/oiGkjum5o1McbSZDSLxVThjynRyGBgiAx27Ps= github.com/bufbuild/protocompile v0.4.0 h1:LbFKd2XowZvQ/kajzguUp2DC9UEIQhIq77fZZlaQsNA= diff --git a/schema/graph.go b/schema/graph.go index 84d81ce0..4875baa2 100644 --- a/schema/graph.go +++ b/schema/graph.go @@ -4,8 +4,8 @@ import ( "encoding/json" "fmt" "io/ioutil" - "os" "path/filepath" + "strings" "github.com/bmeg/grip/log" @@ -13,6 +13,7 @@ import ( "github.com/bmeg/grip/gripql" "github.com/bmeg/jsonschema/v5" + "github.com/bmeg/jsonschemagraph/compile" "github.com/bmeg/jsonschemagraph/graph" "google.golang.org/protobuf/encoding/protojson" "sigs.k8s.io/yaml" @@ -38,7 +39,7 @@ func ParseSchema(schema *jsonschema.Schema) any { schema that consists of only golang primitive types */ //log.Infof("ENTERING FLATTEN SCHEMA %#v\n", schema) - result := make(map[string]any) + vertData := make(map[string]any) if schema.Ref != nil && schema.Ref.Title != "" { // Primitive extensions are currently not supported. if slices.Contains([]string{"Reference", "Link", "FHIRPrimitiveExtension"}, schema.Ref.Title) { @@ -65,10 +66,10 @@ func ParseSchema(schema *jsonschema.Schema) any { continue } if val := ParseSchema(property); val != nil { - result[key] = val + vertData[key] = val } } - return result + return vertData } if schema.AnyOf != nil { return nil @@ -84,7 +85,6 @@ func ParseSchema(schema *jsonschema.Schema) any { } func ParseSchemaGraphs(relpath string, graphName string) ([]*gripql.Graph, error) { - graphs := []*gripql.Graph{} out, err := graph.Load(relpath) if err != nil { log.Info("AN ERROR HAS OCCURED: ", err) @@ -95,7 +95,21 @@ func ParseSchemaGraphs(relpath string, graphName string) ([]*gripql.Graph, error "edges": []map[string]any{}, "graph": graphName, } + edgeList := []map[string]any{} for _, class := range out.Classes { + // Since reading from schema there should be no duplicate edges + if ext, ok := class.Extensions[compile.GraphExtensionTag]; ok { + for _, target := range ext.(compile.GraphExtension).Targets { + ToVertex := strings.Split(target.Rel, "_") + edgeList = append(edgeList, map[string]any{ + "gid": fmt.Sprintf("(%s)-%s->(%s)", class.Title, target.Rel, ToVertex[len(ToVertex)-1]), + "label": target.Rel, + "from": class.Title, + "to": ToVertex[len(ToVertex)-1], + // TODO: No data field supported + }) + } + } vertexData := make(map[string]any) for key, sch := range class.Properties { if sch.Ref != nil && sch.Ref.Title != "" && slices.Contains([]string{"Reference", "Link", "FHIRPrimitiveExtension"}, sch.Ref.Title) { @@ -116,21 +130,25 @@ func ParseSchemaGraphs(relpath string, graphName string) ([]*gripql.Graph, error } vertex := map[string]any{"data": vertexData, "label": "Vertex", "gid": class.Title} graphSchema["vertices"] = append(graphSchema["vertices"].([]map[string]any), vertex) + graphSchema["edges"] = edgeList + } expandedJSON, err := json.Marshal(graphSchema) if err != nil { log.Errorf("Failed to marshal expanded schema: %v", err) } - // For Testing purposes - err = os.WriteFile("new_dicts.json", expandedJSON, 0644) - if err != nil { - log.Errorf("Failed to write to file: %v", err) - } - - log.Info("Posted Schema", string(expandedJSON)) + /* + For Testing purposes + err = os.WriteFile("new_dicts.json", expandedJSON, 0644) + if err != nil { + log.Errorf("Failed to write to file: %v", err) + } + */ - return graphs, nil + graphs := gripql.Graph{} + json.Unmarshal(expandedJSON, &graphs) + return []*gripql.Graph{&graphs}, nil } func ParseYAMLSchemaGraphs(source []byte, graphName string) ([]*gripql.Graph, error) { From 5f507f817c2a54be8c010b0826b78522304cf565 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Fri, 1 Nov 2024 10:43:09 -0700 Subject: [PATCH 05/35] Adds schema load command --- cmd/schema/main.go | 62 +++++++++++++++++++++++++++++++++++++++++++--- schema/graph.go | 55 ++++++++++++++++++++++++++++++++++++++++ 2 files changed, 113 insertions(+), 4 deletions(-) diff --git a/cmd/schema/main.go b/cmd/schema/main.go index 669b9e6d..1afdc411 100644 --- a/cmd/schema/main.go +++ b/cmd/schema/main.go @@ -63,6 +63,55 @@ var getCmd = &cobra.Command{ }, } +var loadPrimitiveSchemafromJsonSchema = &cobra.Command{ + Use: "load", + Short: "Load graph schemas", + Long: ``, + Args: cobra.NoArgs, + RunE: func(cmd *cobra.Command, args []string) error { + if jsonSchemaFile == "" && yamlSchemaDir == "" { + return fmt.Errorf("no schema file was provided") + } + + conn, err := gripql.Connect(rpc.ConfigWithDefaults(host), true) + if err != nil { + return err + } + + if jsonSchemaFile != "" && graphName != "" { + log.Infof("Loading Json Schema file: %s", jsonSchemaFile) + graphs, err := schema.ParseJSONSchemaGraphsFile(jsonSchemaFile, graphName) + if err != nil { + return err + } + for _, g := range graphs { + err := conn.AddSchema(g) + if err != nil { + return err + } + log.Debug("Posted schema: %s", g.Graph) + } + } + if yamlSchemaDir != "" && graphName != "" { + log.Infof("Loading Yaml Schema dir: %s", yamlSchemaDir) + graphs, err := schema.ParseYAMLSchemaGraphsFiles(yamlSchemaDir, graphName) + if err != nil { + log.Info("HELLO ERROR HERE: ", err) + return err + } + for _, g := range graphs { + err := conn.AddSchema(g) + if err != nil { + return err + } + log.Debug("Posted schema: %s", g.Graph) + } + + } + return nil + }, +} + var postCmd = &cobra.Command{ Use: "post", Short: "Post graph schemas", @@ -127,7 +176,7 @@ var postCmd = &cobra.Command{ if jsonSchemaFile != "" && graphName != "" { log.Infof("Loading Json Schema file: %s", jsonSchemaFile) - graphs, err := schema.ParseJSONSchemaGraphsFile(jsonSchemaFile, graphName) + graphs, err := schema.ParseJsonSchema(jsonSchemaFile, graphName) if err != nil { return err } @@ -138,11 +187,10 @@ var postCmd = &cobra.Command{ } log.Debug("Posted schema: %s", g.Graph) } - } if yamlSchemaDir != "" && graphName != "" { log.Infof("Loading Yaml Schema dir: %s", yamlSchemaDir) - graphs, err := schema.ParseYAMLSchemaGraphsFiles(yamlSchemaDir, graphName) + graphs, err := schema.ParseYamlJsonSchema(yamlSchemaDir, graphName) if err != nil { log.Info("HELLO ERROR HERE: ", err) return err @@ -169,10 +217,16 @@ func init() { pflags.StringVar(&host, "host", host, "grip server url") pflags.StringVar(&jsonFile, "json", "", "JSON graph file") pflags.StringVar(&yamlFile, "yaml", "", "YAML graph file") - pflags.StringVar(&graphName, "graphName", "", "Name of schemaGraph") pflags.StringVar(&jsonSchemaFile, "jsonSchema", "", "Json Schema") pflags.StringVar(&yamlSchemaDir, "yamlSchemaDir", "", "Name of YAML schemas dir") + pflags.StringVar(&graphName, "graphName", "", "Name of schemaGraph") + + sflags := loadPrimitiveSchemafromJsonSchema.Flags() + sflags.StringVar(&jsonSchemaFile, "jsonSchema", "", "Json Schema") + sflags.StringVar(&yamlSchemaDir, "yamlSchemaDir", "", "Name of YAML schemas dir") + sflags.StringVar(&graphName, "graphName", "", "Name of schemaGraph") + Cmd.AddCommand(loadPrimitiveSchemafromJsonSchema) Cmd.AddCommand(getCmd) Cmd.AddCommand(postCmd) } diff --git a/schema/graph.go b/schema/graph.go index 4875baa2..71735955 100644 --- a/schema/graph.go +++ b/schema/graph.go @@ -4,6 +4,7 @@ import ( "encoding/json" "fmt" "io/ioutil" + "os" "path/filepath" "strings" @@ -284,6 +285,10 @@ func parseGraphFile(relpath string, format string, graphName string) ([]*gripql. graphs, err = ParseSchemaGraphs(path, graphName) case "yamlSchema": graphs, err = ParseSchemaGraphs(relpath, graphName) + case "jSchema": + graphs, err = ParseJSchema(path, graphName) + case "yjSchema": + graphs, err = ParseJSchema(relpath, graphName) default: err = fmt.Errorf("unknown file format: %s", format) } @@ -293,6 +298,48 @@ func parseGraphFile(relpath string, format string, graphName string) ([]*gripql. return graphs, nil } +func ParseJSchema(path string, graphName string) ([]*gripql.Graph, error) { + graphSchema := map[string]any{ + "vertices": []map[string]any{}, + "edges": []map[string]any{}, + "graph": graphName, + } + file, err := os.Open(path) + if err != nil { + return nil, fmt.Errorf("failed to open file: %v", err) + } + defer file.Close() + + // Read the entire file content + bytes, err := ioutil.ReadAll(file) + if err != nil { + return nil, fmt.Errorf("failed to read file: %v", err) + } + + // Parse JSON into a map + var data map[string]any + if err := json.Unmarshal(bytes, &data); err != nil { + return nil, fmt.Errorf("failed to unmarshal JSON: %v", err) + } + for key, values := range data["$defs"].(map[string]any) { + vals := values.(map[string]any) + if idVal, exists := vals["$id"]; exists { + delete(vals, "$id") + vals["id"] = idVal + } + vertex := map[string]any{"data": values, "label": key, "gid": key} + graphSchema["vertices"] = append(graphSchema["vertices"].([]map[string]any), vertex) + } + + expandedJSON, err := json.Marshal(graphSchema) + if err != nil { + log.Errorf("Failed to marshal expanded schema: %v", err) + } + graphs := gripql.Graph{} + json.Unmarshal(expandedJSON, &graphs) + return []*gripql.Graph{&graphs}, nil +} + // ParseYAMLGraphFile parses a graph file, which is formatted in YAML, // and returns a slice of graph objects. func ParseYAMLGraphsFile(relpath string) ([]*gripql.Graph, error) { @@ -313,6 +360,14 @@ func ParseYAMLSchemaGraphsFiles(relpath string, graphName string) ([]*gripql.Gra return parseGraphFile(relpath, "jsonSchema", graphName) } +func ParseJsonSchema(relpath string, graphName string) ([]*gripql.Graph, error) { + return parseGraphFile(relpath, "jSchema", graphName) +} + +func ParseYamlJsonSchema(relpath string, graphName string) ([]*gripql.Graph, error) { + return parseGraphFile(relpath, "yjSchema", graphName) +} + // GraphToYAMLString returns a graph formatted as a YAML string func GraphToYAMLString(graph *gripql.Graph) (string, error) { out, err := protojson.Marshal(graph) From c1ee08654106a4eb745f1edda5c8843e24919349 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Fri, 1 Nov 2024 16:34:34 -0700 Subject: [PATCH 06/35] start implement json load --- cmd/root.go | 2 + cmd/schema/main.go | 12 +- gripql/.DS_Store | Bin 0 -> 6148 bytes gripql/client.go | 15 + gripql/gripql.pb.dgw.go | 78 ++++ gripql/gripql.pb.go | 763 +++++++++++++++++++++------------------ gripql/gripql.pb.gw.go | 77 ++++ gripql/gripql.proto | 10 + gripql/gripql_grpc.pb.go | 72 ++++ server/api.go | 58 +++ util/file_reader.go | 47 +++ 11 files changed, 782 insertions(+), 352 deletions(-) create mode 100644 gripql/.DS_Store diff --git a/cmd/root.go b/cmd/root.go index 4ac259b2..c17cd818 100644 --- a/cmd/root.go +++ b/cmd/root.go @@ -6,6 +6,7 @@ import ( _ "net/http/pprof" // enable pprof via a flag "os" + "github.com/bmeg/grip/cmd/caliperload" "github.com/bmeg/grip/cmd/create" "github.com/bmeg/grip/cmd/delete" "github.com/bmeg/grip/cmd/drop" @@ -60,6 +61,7 @@ func init() { RootCmd.AddCommand(job.Cmd) RootCmd.AddCommand(load.Cmd) RootCmd.AddCommand(mongoload.Cmd) + RootCmd.AddCommand(caliperload.Cmd) RootCmd.AddCommand(query.Cmd) RootCmd.AddCommand(erclient.Cmd) RootCmd.AddCommand(rdf.Cmd) diff --git a/cmd/schema/main.go b/cmd/schema/main.go index 1afdc411..d40c3b2e 100644 --- a/cmd/schema/main.go +++ b/cmd/schema/main.go @@ -63,7 +63,7 @@ var getCmd = &cobra.Command{ }, } -var loadPrimitiveSchemafromJsonSchema = &cobra.Command{ +var loadGqlSchemafromJsonSchema = &cobra.Command{ Use: "load", Short: "Load graph schemas", Long: ``, @@ -221,12 +221,12 @@ func init() { pflags.StringVar(&yamlSchemaDir, "yamlSchemaDir", "", "Name of YAML schemas dir") pflags.StringVar(&graphName, "graphName", "", "Name of schemaGraph") - sflags := loadPrimitiveSchemafromJsonSchema.Flags() - sflags.StringVar(&jsonSchemaFile, "jsonSchema", "", "Json Schema") - sflags.StringVar(&yamlSchemaDir, "yamlSchemaDir", "", "Name of YAML schemas dir") - sflags.StringVar(&graphName, "graphName", "", "Name of schemaGraph") + gqlflags := loadGqlSchemafromJsonSchema.Flags() + gqlflags.StringVar(&jsonSchemaFile, "jsonSchema", "", "Json Schema") + gqlflags.StringVar(&yamlSchemaDir, "yamlSchemaDir", "", "Name of YAML schemas dir") + gqlflags.StringVar(&graphName, "graphName", "", "Name of schemaGraph") - Cmd.AddCommand(loadPrimitiveSchemafromJsonSchema) + Cmd.AddCommand(loadGqlSchemafromJsonSchema) Cmd.AddCommand(getCmd) Cmd.AddCommand(postCmd) } diff --git a/gripql/.DS_Store b/gripql/.DS_Store new file mode 100644 index 0000000000000000000000000000000000000000..58751a7107855ff167be4b2d7d2a7fb6717ca01b GIT binary patch literal 6148 zcmeHKQA+|r5S~>_MFJlRd|c>NNG&Sqh1=y@^aVx3-=~Ddn&Ifu8tDHyOvR?&y+c zXIe+W-0lYFVSmyoZysxvbVJo2nS`*{$B?UwQ1$errN^oln_S;66j3_m%5=Kh+^@>| z!Qrebr_DyKD)*X=*{oRD+TJ-j?c7HXNG$^}c|9r&@H7(UUXNHj(Utg=;Z{O-H|Uah}7}qD=?knh)XLEL?{o%-iw# z(u9NXEb_<6k7wG#CPm4xC_ miytXyn5!6L=_;D{|Fcwcwh#8l!153U5cLo literal 0 HcmV?d00001 diff --git a/gripql/client.go b/gripql/client.go index dc994e92..535e8d27 100644 --- a/gripql/client.go +++ b/gripql/client.go @@ -181,6 +181,21 @@ func (client Client) BulkAdd(elemChan chan *GraphElement) error { return err } +func (client Client) BulkAddRaw(elemChan chan *RawJson) error { + sc, err := client.EditC.BulkAddRaw(context.Background()) + if err != nil { + return err + } + for elem := range elemChan { + err := sc.Send(elem) + if err != nil { + return err + } + } + _, err = sc.CloseAndRecv() + return err +} + func (client Client) BulkDelete(delete *DeleteData) error { _, err := client.EditC.BulkDelete(context.Background(), delete) return err diff --git a/gripql/gripql.pb.dgw.go b/gripql/gripql.pb.dgw.go index 126a8ca6..075ea8f6 100644 --- a/gripql/gripql.pb.dgw.go +++ b/gripql/gripql.pb.dgw.go @@ -874,6 +874,84 @@ func (shim *EditDirectClient) BulkAdd(ctx context.Context, opts ...grpc.CallOpti } +// Streaming data 'server' shim. Provides the Send/Recv funcs expected by the +// user server code when dealing with a streaming input + +/* Start EditBulkAddRaw streaming input server */ +type directEditBulkAddRaw struct { + ctx context.Context + c chan *RawJson + out chan *BulkEditResult +} + +func (dsm *directEditBulkAddRaw) Recv() (*RawJson, error) { + value, ok := <-dsm.c + if !ok { + return nil, io.EOF + } + return value, nil +} + +func (dsm *directEditBulkAddRaw) Send(a *RawJson) error { + dsm.c <- a + return nil +} + +func (dsm *directEditBulkAddRaw) Context() context.Context { + return dsm.ctx +} + +func (dsm *directEditBulkAddRaw) SendAndClose(o *BulkEditResult) error { + dsm.out <- o + close(dsm.out) + return nil +} + +func (dsm *directEditBulkAddRaw) CloseAndRecv() (*BulkEditResult, error) { + //close(dsm.c) + out := <- dsm.out + return out, nil +} + +func (dsm *directEditBulkAddRaw) CloseSend() error { close(dsm.c); return nil } +func (dsm *directEditBulkAddRaw) SetTrailer(metadata.MD) {} +func (dsm *directEditBulkAddRaw) SetHeader(metadata.MD) error { return nil } +func (dsm *directEditBulkAddRaw) SendHeader(metadata.MD) error { return nil } +func (dsm *directEditBulkAddRaw) SendMsg(m interface{}) error { dsm.out <- m.(*BulkEditResult); return nil } + +func (dsm *directEditBulkAddRaw) RecvMsg(m interface{}) error { + t, err := dsm.Recv() + mPtr := m.(*RawJson) + if t != nil { + *mPtr = *t + } + return err +} + +func (dsm *directEditBulkAddRaw) Header() (metadata.MD, error) { return nil, nil } +func (dsm *directEditBulkAddRaw) Trailer() metadata.MD { return nil } +/* End EditBulkAddRaw streaming input server */ + + +func (shim *EditDirectClient) BulkAddRaw(ctx context.Context, opts ...grpc.CallOption) (Edit_BulkAddRawClient, error) { + md, _ := metadata.FromOutgoingContext(ctx) + ictx := metadata.NewIncomingContext(ctx, md) + w := &directEditBulkAddRaw{ictx, make(chan *RawJson, 100), make(chan *BulkEditResult, 3)} + if shim.streamServerInt != nil { + info := grpc.StreamServerInfo{ + FullMethod: "/gripql.Edit/BulkAddRaw", + IsClientStream: true, + } + go shim.streamServerInt(shim.server, w, &info, _Edit_BulkAddRaw_Handler) + return w, nil + } + go func() { + shim.server.BulkAddRaw(w) + }() + return w, nil +} + + //AddGraph shim func (shim *EditDirectClient) AddGraph(ctx context.Context, in *GraphID, opts ...grpc.CallOption) (*EditResult, error) { md, _ := metadata.FromOutgoingContext(ctx) diff --git a/gripql/gripql.pb.go b/gripql/gripql.pb.go index 50626d24..f79eb7ea 100644 --- a/gripql/gripql.pb.go +++ b/gripql/gripql.pb.go @@ -3193,6 +3193,53 @@ func (x *DeleteData) GetEdges() []string { return nil } +type RawJson struct { + state protoimpl.MessageState + sizeCache protoimpl.SizeCache + unknownFields protoimpl.UnknownFields + + Data *structpb.Struct `protobuf:"bytes,1,opt,name=data,proto3" json:"data,omitempty"` +} + +func (x *RawJson) Reset() { + *x = RawJson{} + if protoimpl.UnsafeEnabled { + mi := &file_gripql_proto_msgTypes[41] + ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) + ms.StoreMessageInfo(mi) + } +} + +func (x *RawJson) String() string { + return protoimpl.X.MessageStringOf(x) +} + +func (*RawJson) ProtoMessage() {} + +func (x *RawJson) ProtoReflect() protoreflect.Message { + mi := &file_gripql_proto_msgTypes[41] + if protoimpl.UnsafeEnabled && x != nil { + ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) + if ms.LoadMessageInfo() == nil { + ms.StoreMessageInfo(mi) + } + return ms + } + return mi.MessageOf(x) +} + +// Deprecated: Use RawJson.ProtoReflect.Descriptor instead. +func (*RawJson) Descriptor() ([]byte, []int) { + return file_gripql_proto_rawDescGZIP(), []int{41} +} + +func (x *RawJson) GetData() *structpb.Struct { + if x != nil { + return x.Data + } + return nil +} + type PluginConfig struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache @@ -3206,7 +3253,7 @@ type PluginConfig struct { func (x *PluginConfig) Reset() { *x = PluginConfig{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[41] + mi := &file_gripql_proto_msgTypes[42] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -3219,7 +3266,7 @@ func (x *PluginConfig) String() string { func (*PluginConfig) ProtoMessage() {} func (x *PluginConfig) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[41] + mi := &file_gripql_proto_msgTypes[42] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -3232,7 +3279,7 @@ func (x *PluginConfig) ProtoReflect() protoreflect.Message { // Deprecated: Use PluginConfig.ProtoReflect.Descriptor instead. func (*PluginConfig) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{41} + return file_gripql_proto_rawDescGZIP(), []int{42} } func (x *PluginConfig) GetName() string { @@ -3268,7 +3315,7 @@ type PluginStatus struct { func (x *PluginStatus) Reset() { *x = PluginStatus{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[42] + mi := &file_gripql_proto_msgTypes[43] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -3281,7 +3328,7 @@ func (x *PluginStatus) String() string { func (*PluginStatus) ProtoMessage() {} func (x *PluginStatus) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[42] + mi := &file_gripql_proto_msgTypes[43] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -3294,7 +3341,7 @@ func (x *PluginStatus) ProtoReflect() protoreflect.Message { // Deprecated: Use PluginStatus.ProtoReflect.Descriptor instead. func (*PluginStatus) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{42} + return file_gripql_proto_rawDescGZIP(), []int{43} } func (x *PluginStatus) GetName() string { @@ -3322,7 +3369,7 @@ type ListDriversResponse struct { func (x *ListDriversResponse) Reset() { *x = ListDriversResponse{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[43] + mi := &file_gripql_proto_msgTypes[44] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -3335,7 +3382,7 @@ func (x *ListDriversResponse) String() string { func (*ListDriversResponse) ProtoMessage() {} func (x *ListDriversResponse) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[43] + mi := &file_gripql_proto_msgTypes[44] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -3348,7 +3395,7 @@ func (x *ListDriversResponse) ProtoReflect() protoreflect.Message { // Deprecated: Use ListDriversResponse.ProtoReflect.Descriptor instead. func (*ListDriversResponse) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{43} + return file_gripql_proto_rawDescGZIP(), []int{44} } func (x *ListDriversResponse) GetDrivers() []string { @@ -3369,7 +3416,7 @@ type ListPluginsResponse struct { func (x *ListPluginsResponse) Reset() { *x = ListPluginsResponse{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[44] + mi := &file_gripql_proto_msgTypes[45] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -3382,7 +3429,7 @@ func (x *ListPluginsResponse) String() string { func (*ListPluginsResponse) ProtoMessage() {} func (x *ListPluginsResponse) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[44] + mi := &file_gripql_proto_msgTypes[45] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -3395,7 +3442,7 @@ func (x *ListPluginsResponse) ProtoReflect() protoreflect.Message { // Deprecated: Use ListPluginsResponse.ProtoReflect.Descriptor instead. func (*ListPluginsResponse) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{44} + return file_gripql_proto_rawDescGZIP(), []int{45} } func (x *ListPluginsResponse) GetPlugins() []string { @@ -3743,230 +3790,238 @@ var file_gripql_proto_rawDesc = []byte{ 0x68, 0x12, 0x1a, 0x0a, 0x08, 0x76, 0x65, 0x72, 0x74, 0x69, 0x63, 0x65, 0x73, 0x18, 0x02, 0x20, 0x03, 0x28, 0x09, 0x52, 0x08, 0x76, 0x65, 0x72, 0x74, 0x69, 0x63, 0x65, 0x73, 0x12, 0x14, 0x0a, 0x05, 0x65, 0x64, 0x67, 0x65, 0x73, 0x18, 0x03, 0x20, 0x03, 0x28, 0x09, 0x52, 0x05, 0x65, 0x64, - 0x67, 0x65, 0x73, 0x22, 0xaf, 0x01, 0x0a, 0x0c, 0x50, 0x6c, 0x75, 0x67, 0x69, 0x6e, 0x43, 0x6f, - 0x6e, 0x66, 0x69, 0x67, 0x12, 0x12, 0x0a, 0x04, 0x6e, 0x61, 0x6d, 0x65, 0x18, 0x01, 0x20, 0x01, - 0x28, 0x09, 0x52, 0x04, 0x6e, 0x61, 0x6d, 0x65, 0x12, 0x16, 0x0a, 0x06, 0x64, 0x72, 0x69, 0x76, - 0x65, 0x72, 0x18, 0x02, 0x20, 0x01, 0x28, 0x09, 0x52, 0x06, 0x64, 0x72, 0x69, 0x76, 0x65, 0x72, - 0x12, 0x38, 0x0a, 0x06, 0x63, 0x6f, 0x6e, 0x66, 0x69, 0x67, 0x18, 0x03, 0x20, 0x03, 0x28, 0x0b, - 0x32, 0x20, 0x2e, 0x67, 0x72, 0x69, 0x70, 0x71, 0x6c, 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make([]protoimpl.EnumInfo, 3) -var file_gripql_proto_msgTypes = make([]protoimpl.MessageInfo, 47) +var file_gripql_proto_msgTypes = make([]protoimpl.MessageInfo, 48) var file_gripql_proto_goTypes = []any{ (Condition)(0), // 0: gripql.Condition (JobState)(0), // 1: gripql.JobState @@ -4028,44 +4083,45 @@ var file_gripql_proto_goTypes = []any{ (*ListLabelsResponse)(nil), // 41: gripql.ListLabelsResponse (*TableInfo)(nil), // 42: gripql.TableInfo (*DeleteData)(nil), // 43: gripql.DeleteData - (*PluginConfig)(nil), // 44: gripql.PluginConfig - (*PluginStatus)(nil), // 45: gripql.PluginStatus - (*ListDriversResponse)(nil), // 46: gripql.ListDriversResponse - (*ListPluginsResponse)(nil), // 47: gripql.ListPluginsResponse - nil, // 48: gripql.TableInfo.LinkMapEntry - nil, // 49: gripql.PluginConfig.ConfigEntry - (*structpb.ListValue)(nil), // 50: google.protobuf.ListValue - (*structpb.Value)(nil), // 51: google.protobuf.Value - (*structpb.Struct)(nil), // 52: google.protobuf.Struct + (*RawJson)(nil), // 44: gripql.RawJson + (*PluginConfig)(nil), // 45: gripql.PluginConfig + (*PluginStatus)(nil), // 46: gripql.PluginStatus + (*ListDriversResponse)(nil), // 47: gripql.ListDriversResponse + (*ListPluginsResponse)(nil), // 48: gripql.ListPluginsResponse + nil, // 49: gripql.TableInfo.LinkMapEntry + nil, // 50: gripql.PluginConfig.ConfigEntry + (*structpb.ListValue)(nil), // 51: google.protobuf.ListValue + (*structpb.Value)(nil), // 52: google.protobuf.Value + (*structpb.Struct)(nil), // 53: google.protobuf.Struct } var file_gripql_proto_depIdxs = []int32{ 25, // 0: gripql.Graph.vertices:type_name -> gripql.Vertex 26, // 1: gripql.Graph.edges:type_name -> gripql.Edge 6, // 2: gripql.GraphQuery.query:type_name -> gripql.GraphStatement 6, // 3: gripql.QuerySet.query:type_name -> gripql.GraphStatement - 50, // 4: gripql.GraphStatement.v:type_name -> google.protobuf.ListValue - 50, // 5: gripql.GraphStatement.e:type_name -> google.protobuf.ListValue - 50, // 6: gripql.GraphStatement.in:type_name -> google.protobuf.ListValue - 50, // 7: gripql.GraphStatement.out:type_name -> google.protobuf.ListValue - 50, // 8: gripql.GraphStatement.both:type_name -> google.protobuf.ListValue - 50, // 9: gripql.GraphStatement.in_e:type_name -> google.protobuf.ListValue - 50, // 10: gripql.GraphStatement.out_e:type_name -> google.protobuf.ListValue - 50, // 11: gripql.GraphStatement.both_e:type_name -> google.protobuf.ListValue - 50, // 12: gripql.GraphStatement.in_null:type_name -> google.protobuf.ListValue - 50, // 13: gripql.GraphStatement.out_null:type_name -> google.protobuf.ListValue - 50, // 14: gripql.GraphStatement.in_e_null:type_name -> google.protobuf.ListValue - 50, // 15: gripql.GraphStatement.out_e_null:type_name -> google.protobuf.ListValue + 51, // 4: gripql.GraphStatement.v:type_name -> google.protobuf.ListValue + 51, // 5: gripql.GraphStatement.e:type_name -> google.protobuf.ListValue + 51, // 6: gripql.GraphStatement.in:type_name -> google.protobuf.ListValue + 51, // 7: gripql.GraphStatement.out:type_name -> google.protobuf.ListValue + 51, // 8: gripql.GraphStatement.both:type_name -> google.protobuf.ListValue + 51, // 9: gripql.GraphStatement.in_e:type_name -> google.protobuf.ListValue + 51, // 10: gripql.GraphStatement.out_e:type_name -> google.protobuf.ListValue + 51, // 11: gripql.GraphStatement.both_e:type_name -> google.protobuf.ListValue + 51, // 12: gripql.GraphStatement.in_null:type_name -> google.protobuf.ListValue + 51, // 13: gripql.GraphStatement.out_null:type_name -> google.protobuf.ListValue + 51, // 14: gripql.GraphStatement.in_e_null:type_name -> google.protobuf.ListValue + 51, // 15: gripql.GraphStatement.out_e_null:type_name -> google.protobuf.ListValue 7, // 16: gripql.GraphStatement.range:type_name -> gripql.Range 20, // 17: gripql.GraphStatement.has:type_name -> gripql.HasExpression - 50, // 18: gripql.GraphStatement.has_label:type_name -> google.protobuf.ListValue - 50, // 19: gripql.GraphStatement.has_key:type_name -> google.protobuf.ListValue - 50, // 20: gripql.GraphStatement.has_id:type_name -> google.protobuf.ListValue - 50, // 21: gripql.GraphStatement.distinct:type_name -> google.protobuf.ListValue + 51, // 18: gripql.GraphStatement.has_label:type_name -> google.protobuf.ListValue + 51, // 19: gripql.GraphStatement.has_key:type_name -> google.protobuf.ListValue + 51, // 20: gripql.GraphStatement.has_id:type_name -> google.protobuf.ListValue + 51, // 21: gripql.GraphStatement.distinct:type_name -> google.protobuf.ListValue 17, // 22: gripql.GraphStatement.pivot:type_name -> gripql.PivotStep - 50, // 23: gripql.GraphStatement.fields:type_name -> google.protobuf.ListValue + 51, // 23: gripql.GraphStatement.fields:type_name -> google.protobuf.ListValue 9, // 24: gripql.GraphStatement.aggregate:type_name -> gripql.Aggregations - 51, // 25: gripql.GraphStatement.render:type_name -> google.protobuf.Value - 50, // 26: gripql.GraphStatement.path:type_name -> google.protobuf.ListValue + 52, // 25: gripql.GraphStatement.render:type_name -> google.protobuf.Value + 51, // 26: gripql.GraphStatement.path:type_name -> google.protobuf.ListValue 22, // 27: gripql.GraphStatement.jump:type_name -> gripql.Jump 23, // 28: gripql.GraphStatement.set:type_name -> gripql.Set 24, // 29: gripql.GraphStatement.increment:type_name -> gripql.Increment @@ -4077,102 +4133,105 @@ var file_gripql_proto_depIdxs = []int32{ 14, // 35: gripql.Aggregate.field:type_name -> gripql.FieldAggregation 15, // 36: gripql.Aggregate.type:type_name -> gripql.TypeAggregation 16, // 37: gripql.Aggregate.count:type_name -> gripql.CountAggregation - 51, // 38: gripql.NamedAggregationResult.key:type_name -> google.protobuf.Value + 52, // 38: gripql.NamedAggregationResult.key:type_name -> google.protobuf.Value 20, // 39: gripql.HasExpressionList.expressions:type_name -> gripql.HasExpression 19, // 40: gripql.HasExpression.and:type_name -> gripql.HasExpressionList 19, // 41: gripql.HasExpression.or:type_name -> gripql.HasExpressionList 20, // 42: gripql.HasExpression.not:type_name -> gripql.HasExpression 21, // 43: gripql.HasExpression.condition:type_name -> gripql.HasCondition - 51, // 44: gripql.HasCondition.value:type_name -> google.protobuf.Value + 52, // 44: gripql.HasCondition.value:type_name -> google.protobuf.Value 0, // 45: gripql.HasCondition.condition:type_name -> gripql.Condition 20, // 46: gripql.Jump.expression:type_name -> gripql.HasExpression - 51, // 47: gripql.Set.value:type_name -> google.protobuf.Value - 52, // 48: gripql.Vertex.data:type_name -> google.protobuf.Struct - 52, // 49: gripql.Edge.data:type_name -> google.protobuf.Struct + 52, // 47: gripql.Set.value:type_name -> google.protobuf.Value + 53, // 48: gripql.Vertex.data:type_name -> google.protobuf.Struct + 53, // 49: gripql.Edge.data:type_name -> google.protobuf.Struct 25, // 50: gripql.QueryResult.vertex:type_name -> gripql.Vertex 26, // 51: gripql.QueryResult.edge:type_name -> gripql.Edge 18, // 52: gripql.QueryResult.aggregations:type_name -> gripql.NamedAggregationResult - 51, // 53: gripql.QueryResult.render:type_name -> google.protobuf.Value - 50, // 54: gripql.QueryResult.path:type_name -> google.protobuf.ListValue + 52, // 53: gripql.QueryResult.render:type_name -> google.protobuf.Value + 51, // 54: gripql.QueryResult.path:type_name -> google.protobuf.ListValue 6, // 55: gripql.ExtendQuery.query:type_name -> gripql.GraphStatement 1, // 56: gripql.JobStatus.state:type_name -> gripql.JobState 6, // 57: gripql.JobStatus.query:type_name -> gripql.GraphStatement 25, // 58: gripql.GraphElement.vertex:type_name -> gripql.Vertex 26, // 59: gripql.GraphElement.edge:type_name -> gripql.Edge 36, // 60: gripql.ListIndicesResponse.indices:type_name -> gripql.IndexID - 48, // 61: gripql.TableInfo.link_map:type_name -> gripql.TableInfo.LinkMapEntry - 49, // 62: gripql.PluginConfig.config:type_name -> gripql.PluginConfig.ConfigEntry - 4, // 63: gripql.Query.Traversal:input_type -> gripql.GraphQuery - 35, // 64: gripql.Query.GetVertex:input_type -> gripql.ElementID - 35, // 65: gripql.Query.GetEdge:input_type -> gripql.ElementID - 34, // 66: gripql.Query.GetTimestamp:input_type -> gripql.GraphID - 34, // 67: gripql.Query.GetSchema:input_type -> gripql.GraphID - 34, // 68: gripql.Query.GetMapping:input_type -> gripql.GraphID - 38, // 69: gripql.Query.ListGraphs:input_type -> gripql.Empty - 34, // 70: gripql.Query.ListIndices:input_type -> gripql.GraphID - 34, // 71: gripql.Query.ListLabels:input_type -> gripql.GraphID - 38, // 72: gripql.Query.ListTables:input_type -> gripql.Empty - 4, // 73: gripql.Job.Submit:input_type -> gripql.GraphQuery - 34, // 74: gripql.Job.ListJobs:input_type -> gripql.GraphID - 4, // 75: gripql.Job.SearchJobs:input_type -> gripql.GraphQuery - 28, // 76: gripql.Job.DeleteJob:input_type -> gripql.QueryJob - 28, // 77: gripql.Job.GetJob:input_type -> gripql.QueryJob - 28, // 78: gripql.Job.ViewJob:input_type -> gripql.QueryJob - 29, // 79: gripql.Job.ResumeJob:input_type -> gripql.ExtendQuery - 33, // 80: gripql.Edit.AddVertex:input_type -> gripql.GraphElement - 33, // 81: gripql.Edit.AddEdge:input_type -> gripql.GraphElement - 33, // 82: gripql.Edit.BulkAdd:input_type -> gripql.GraphElement - 34, // 83: gripql.Edit.AddGraph:input_type -> gripql.GraphID - 34, // 84: gripql.Edit.DeleteGraph:input_type -> gripql.GraphID - 43, // 85: gripql.Edit.BulkDelete:input_type -> gripql.DeleteData - 35, // 86: gripql.Edit.DeleteVertex:input_type -> gripql.ElementID - 35, // 87: gripql.Edit.DeleteEdge:input_type -> gripql.ElementID - 36, // 88: gripql.Edit.AddIndex:input_type -> gripql.IndexID - 36, // 89: gripql.Edit.DeleteIndex:input_type -> gripql.IndexID - 3, // 90: gripql.Edit.AddSchema:input_type -> gripql.Graph - 34, // 91: gripql.Edit.SampleSchema:input_type -> gripql.GraphID - 3, // 92: gripql.Edit.AddMapping:input_type -> gripql.Graph - 44, // 93: gripql.Configure.StartPlugin:input_type -> gripql.PluginConfig - 38, // 94: gripql.Configure.ListPlugins:input_type -> gripql.Empty - 38, // 95: gripql.Configure.ListDrivers:input_type -> gripql.Empty - 27, // 96: gripql.Query.Traversal:output_type -> gripql.QueryResult - 25, // 97: gripql.Query.GetVertex:output_type -> gripql.Vertex - 26, // 98: gripql.Query.GetEdge:output_type -> gripql.Edge - 37, // 99: gripql.Query.GetTimestamp:output_type -> gripql.Timestamp - 3, // 100: gripql.Query.GetSchema:output_type -> gripql.Graph - 3, // 101: gripql.Query.GetMapping:output_type -> gripql.Graph - 39, // 102: gripql.Query.ListGraphs:output_type -> gripql.ListGraphsResponse - 40, // 103: gripql.Query.ListIndices:output_type -> gripql.ListIndicesResponse - 41, // 104: gripql.Query.ListLabels:output_type -> gripql.ListLabelsResponse - 42, // 105: gripql.Query.ListTables:output_type -> gripql.TableInfo - 28, // 106: gripql.Job.Submit:output_type -> gripql.QueryJob - 28, // 107: gripql.Job.ListJobs:output_type -> gripql.QueryJob - 30, // 108: gripql.Job.SearchJobs:output_type -> gripql.JobStatus - 30, // 109: gripql.Job.DeleteJob:output_type -> gripql.JobStatus - 30, // 110: gripql.Job.GetJob:output_type -> gripql.JobStatus - 27, // 111: gripql.Job.ViewJob:output_type -> gripql.QueryResult - 27, // 112: gripql.Job.ResumeJob:output_type -> gripql.QueryResult - 31, // 113: gripql.Edit.AddVertex:output_type -> gripql.EditResult - 31, // 114: gripql.Edit.AddEdge:output_type -> gripql.EditResult - 32, // 115: gripql.Edit.BulkAdd:output_type -> gripql.BulkEditResult - 31, // 116: gripql.Edit.AddGraph:output_type -> gripql.EditResult - 31, // 117: gripql.Edit.DeleteGraph:output_type -> gripql.EditResult - 31, // 118: gripql.Edit.BulkDelete:output_type -> gripql.EditResult - 31, // 119: gripql.Edit.DeleteVertex:output_type -> gripql.EditResult - 31, // 120: gripql.Edit.DeleteEdge:output_type -> gripql.EditResult - 31, // 121: gripql.Edit.AddIndex:output_type -> gripql.EditResult - 31, // 122: gripql.Edit.DeleteIndex:output_type -> gripql.EditResult - 31, // 123: gripql.Edit.AddSchema:output_type -> gripql.EditResult - 3, // 124: gripql.Edit.SampleSchema:output_type -> gripql.Graph - 31, // 125: gripql.Edit.AddMapping:output_type -> gripql.EditResult - 45, // 126: gripql.Configure.StartPlugin:output_type -> gripql.PluginStatus - 47, // 127: gripql.Configure.ListPlugins:output_type -> gripql.ListPluginsResponse - 46, // 128: gripql.Configure.ListDrivers:output_type -> gripql.ListDriversResponse - 96, // [96:129] is the sub-list for method output_type - 63, // [63:96] is the sub-list for method input_type - 63, // [63:63] is the sub-list for extension type_name - 63, // [63:63] is the sub-list for extension extendee - 0, // [0:63] is the sub-list for field type_name + 49, // 61: gripql.TableInfo.link_map:type_name -> gripql.TableInfo.LinkMapEntry + 53, // 62: gripql.RawJson.data:type_name -> google.protobuf.Struct + 50, // 63: gripql.PluginConfig.config:type_name -> gripql.PluginConfig.ConfigEntry + 4, // 64: gripql.Query.Traversal:input_type -> gripql.GraphQuery + 35, // 65: gripql.Query.GetVertex:input_type -> gripql.ElementID + 35, // 66: gripql.Query.GetEdge:input_type -> gripql.ElementID + 34, // 67: gripql.Query.GetTimestamp:input_type -> gripql.GraphID + 34, // 68: gripql.Query.GetSchema:input_type -> gripql.GraphID + 34, // 69: gripql.Query.GetMapping:input_type -> gripql.GraphID + 38, // 70: gripql.Query.ListGraphs:input_type -> gripql.Empty + 34, // 71: gripql.Query.ListIndices:input_type -> gripql.GraphID + 34, // 72: gripql.Query.ListLabels:input_type -> gripql.GraphID + 38, // 73: gripql.Query.ListTables:input_type -> gripql.Empty + 4, // 74: gripql.Job.Submit:input_type -> gripql.GraphQuery + 34, // 75: gripql.Job.ListJobs:input_type -> gripql.GraphID + 4, // 76: gripql.Job.SearchJobs:input_type -> gripql.GraphQuery + 28, // 77: gripql.Job.DeleteJob:input_type -> gripql.QueryJob + 28, // 78: gripql.Job.GetJob:input_type -> gripql.QueryJob + 28, // 79: gripql.Job.ViewJob:input_type -> gripql.QueryJob + 29, // 80: gripql.Job.ResumeJob:input_type -> gripql.ExtendQuery + 33, // 81: gripql.Edit.AddVertex:input_type -> gripql.GraphElement + 33, // 82: gripql.Edit.AddEdge:input_type -> gripql.GraphElement + 33, // 83: gripql.Edit.BulkAdd:input_type -> gripql.GraphElement + 44, // 84: gripql.Edit.BulkAddRaw:input_type -> gripql.RawJson + 34, // 85: gripql.Edit.AddGraph:input_type -> gripql.GraphID + 34, // 86: gripql.Edit.DeleteGraph:input_type -> gripql.GraphID + 43, // 87: gripql.Edit.BulkDelete:input_type -> gripql.DeleteData + 35, // 88: gripql.Edit.DeleteVertex:input_type -> gripql.ElementID + 35, // 89: gripql.Edit.DeleteEdge:input_type -> gripql.ElementID + 36, // 90: gripql.Edit.AddIndex:input_type -> gripql.IndexID + 36, // 91: gripql.Edit.DeleteIndex:input_type -> gripql.IndexID + 3, // 92: gripql.Edit.AddSchema:input_type -> gripql.Graph + 34, // 93: gripql.Edit.SampleSchema:input_type -> gripql.GraphID + 3, // 94: gripql.Edit.AddMapping:input_type -> gripql.Graph + 45, // 95: gripql.Configure.StartPlugin:input_type -> gripql.PluginConfig + 38, // 96: gripql.Configure.ListPlugins:input_type -> gripql.Empty + 38, // 97: gripql.Configure.ListDrivers:input_type -> gripql.Empty + 27, // 98: gripql.Query.Traversal:output_type -> gripql.QueryResult + 25, // 99: gripql.Query.GetVertex:output_type -> gripql.Vertex + 26, // 100: gripql.Query.GetEdge:output_type -> gripql.Edge + 37, // 101: gripql.Query.GetTimestamp:output_type -> gripql.Timestamp + 3, // 102: gripql.Query.GetSchema:output_type -> gripql.Graph + 3, // 103: gripql.Query.GetMapping:output_type -> gripql.Graph + 39, // 104: gripql.Query.ListGraphs:output_type -> gripql.ListGraphsResponse + 40, // 105: gripql.Query.ListIndices:output_type -> gripql.ListIndicesResponse + 41, // 106: gripql.Query.ListLabels:output_type -> gripql.ListLabelsResponse + 42, // 107: gripql.Query.ListTables:output_type -> gripql.TableInfo + 28, // 108: gripql.Job.Submit:output_type -> gripql.QueryJob + 28, // 109: gripql.Job.ListJobs:output_type -> gripql.QueryJob + 30, // 110: gripql.Job.SearchJobs:output_type -> gripql.JobStatus + 30, // 111: gripql.Job.DeleteJob:output_type -> gripql.JobStatus + 30, // 112: gripql.Job.GetJob:output_type -> gripql.JobStatus + 27, // 113: gripql.Job.ViewJob:output_type -> gripql.QueryResult + 27, // 114: gripql.Job.ResumeJob:output_type -> gripql.QueryResult + 31, // 115: gripql.Edit.AddVertex:output_type -> gripql.EditResult + 31, // 116: gripql.Edit.AddEdge:output_type -> gripql.EditResult + 32, // 117: gripql.Edit.BulkAdd:output_type -> gripql.BulkEditResult + 32, // 118: gripql.Edit.BulkAddRaw:output_type -> gripql.BulkEditResult + 31, // 119: gripql.Edit.AddGraph:output_type -> gripql.EditResult + 31, // 120: gripql.Edit.DeleteGraph:output_type -> gripql.EditResult + 31, // 121: gripql.Edit.BulkDelete:output_type -> gripql.EditResult + 31, // 122: gripql.Edit.DeleteVertex:output_type -> gripql.EditResult + 31, // 123: gripql.Edit.DeleteEdge:output_type -> gripql.EditResult + 31, // 124: gripql.Edit.AddIndex:output_type -> gripql.EditResult + 31, // 125: gripql.Edit.DeleteIndex:output_type -> gripql.EditResult + 31, // 126: gripql.Edit.AddSchema:output_type -> gripql.EditResult + 3, // 127: gripql.Edit.SampleSchema:output_type -> gripql.Graph + 31, // 128: gripql.Edit.AddMapping:output_type -> gripql.EditResult + 46, // 129: gripql.Configure.StartPlugin:output_type -> gripql.PluginStatus + 48, // 130: gripql.Configure.ListPlugins:output_type -> gripql.ListPluginsResponse + 47, // 131: gripql.Configure.ListDrivers:output_type -> gripql.ListDriversResponse + 98, // [98:132] is the sub-list for method output_type + 64, // [64:98] is the sub-list for method input_type + 64, // [64:64] is the sub-list for extension type_name + 64, // [64:64] is the sub-list for extension extendee + 0, // [0:64] is the sub-list for field type_name } func init() { file_gripql_proto_init() } @@ -4674,7 +4733,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[41].Exporter = func(v any, i int) any { - switch v := v.(*PluginConfig); i { + switch v := v.(*RawJson); i { case 0: return &v.state case 1: @@ -4686,7 +4745,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[42].Exporter = func(v any, i int) any { - switch v := v.(*PluginStatus); i { + switch v := v.(*PluginConfig); i { case 0: return &v.state case 1: @@ -4698,7 +4757,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[43].Exporter = func(v any, i int) any { - switch v := v.(*ListDriversResponse); i { + switch v := v.(*PluginStatus); i { case 0: return &v.state case 1: @@ -4710,6 +4769,18 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[44].Exporter = func(v any, i int) any { + switch v := v.(*ListDriversResponse); i { + case 0: + return &v.state + case 1: + return &v.sizeCache + case 2: + return &v.unknownFields + default: + return nil + } + } + file_gripql_proto_msgTypes[45].Exporter = func(v any, i int) any { switch v := v.(*ListPluginsResponse); i { case 0: return &v.state @@ -4785,7 +4856,7 @@ func file_gripql_proto_init() { GoPackagePath: reflect.TypeOf(x{}).PkgPath(), RawDescriptor: file_gripql_proto_rawDesc, NumEnums: 3, - NumMessages: 47, + NumMessages: 48, NumExtensions: 0, NumServices: 4, }, diff --git a/gripql/gripql.pb.gw.go b/gripql/gripql.pb.gw.go index 74aa9dde..ff2547f2 100644 --- a/gripql/gripql.pb.gw.go +++ b/gripql/gripql.pb.gw.go @@ -1070,6 +1070,50 @@ func request_Edit_BulkAdd_0(ctx context.Context, marshaler runtime.Marshaler, cl } +func request_Edit_BulkAddRaw_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) { + var metadata runtime.ServerMetadata + stream, err := client.BulkAddRaw(ctx) + if err != nil { + grpclog.Errorf("Failed to start streaming: %v", err) + return nil, metadata, err + } + dec := marshaler.NewDecoder(req.Body) + for { + var protoReq RawJson + err = dec.Decode(&protoReq) + if err == io.EOF { + break + } + if err != nil { + grpclog.Errorf("Failed to decode request: %v", err) + return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err) + } + if err = stream.Send(&protoReq); err != nil { + if err == io.EOF { + break + } + grpclog.Errorf("Failed to send request: %v", err) + return nil, metadata, err + } + } + + if err := stream.CloseSend(); err != nil { + grpclog.Errorf("Failed to terminate client stream: %v", err) + return nil, metadata, err + } + header, err := stream.Header() + if err != nil { + grpclog.Errorf("Failed to get header from client: %v", err) + return nil, metadata, err + } + metadata.HeaderMD = header + + msg, err := stream.CloseAndRecv() + metadata.TrailerMD = stream.Trailer() + return msg, metadata, err + +} + func request_Edit_AddGraph_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) { var protoReq GraphID var metadata runtime.ServerMetadata @@ -2185,6 +2229,13 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve return }) + mux.Handle("POST", pattern_Edit_BulkAddRaw_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) { + err := status.Error(codes.Unimplemented, "streaming calls are not yet supported in the in-process transport") + _, outboundMarshaler := runtime.MarshalerForRequest(mux, req) + runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err) + return + }) + mux.Handle("POST", pattern_Edit_AddGraph_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) { ctx, cancel := context.WithCancel(req.Context()) defer cancel() @@ -3159,6 +3210,28 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien }) + mux.Handle("POST", pattern_Edit_BulkAddRaw_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) { + ctx, cancel := context.WithCancel(req.Context()) + defer cancel() + inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req) + var err error + var annotatedContext context.Context + annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/BulkAddRaw", runtime.WithHTTPPathPattern("/v1/rawJson")) + if err != nil { + runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err) + return + } + resp, md, err := request_Edit_BulkAddRaw_0(annotatedContext, inboundMarshaler, client, req, pathParams) + annotatedContext = runtime.NewServerMetadataContext(annotatedContext, md) + if err != nil { + runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err) + return + } + + forward_Edit_BulkAddRaw_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...) + + }) + mux.Handle("POST", pattern_Edit_AddGraph_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) { ctx, cancel := context.WithCancel(req.Context()) defer cancel() @@ -3389,6 +3462,8 @@ var ( pattern_Edit_BulkAdd_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1}, []string{"v1", "graph"}, "")) + pattern_Edit_BulkAddRaw_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1}, []string{"v1", "rawJson"}, "")) + pattern_Edit_AddGraph_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1}, []string{"v1", "graph"}, "")) pattern_Edit_DeleteGraph_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1}, []string{"v1", "graph"}, "")) @@ -3417,6 +3492,8 @@ var ( forward_Edit_BulkAdd_0 = runtime.ForwardResponseMessage + forward_Edit_BulkAddRaw_0 = runtime.ForwardResponseMessage + forward_Edit_AddGraph_0 = runtime.ForwardResponseMessage forward_Edit_DeleteGraph_0 = runtime.ForwardResponseMessage diff --git a/gripql/gripql.proto b/gripql/gripql.proto index 7845e162..0f7390bb 100644 --- a/gripql/gripql.proto +++ b/gripql/gripql.proto @@ -307,6 +307,10 @@ message DeleteData { repeated string edges = 3; } +message RawJson { + google.protobuf.Struct data = 1; +} + service Query { rpc Traversal(GraphQuery) returns (stream QueryResult) { option (google.api.http) = { @@ -440,6 +444,12 @@ service Edit { }; } + rpc BulkAddRaw (stream RawJson) returns (BulkEditResult) { + option (google.api.http) = { + post: "/v1/rawJson" + }; + } + rpc AddGraph(GraphID) returns (EditResult) { option (google.api.http) = { post: "/v1/graph/{graph}" diff --git a/gripql/gripql_grpc.pb.go b/gripql/gripql_grpc.pb.go index ef146e6e..edad35cd 100644 --- a/gripql/gripql_grpc.pb.go +++ b/gripql/gripql_grpc.pb.go @@ -938,6 +938,7 @@ const ( Edit_AddVertex_FullMethodName = "/gripql.Edit/AddVertex" Edit_AddEdge_FullMethodName = "/gripql.Edit/AddEdge" Edit_BulkAdd_FullMethodName = "/gripql.Edit/BulkAdd" + Edit_BulkAddRaw_FullMethodName = "/gripql.Edit/BulkAddRaw" Edit_AddGraph_FullMethodName = "/gripql.Edit/AddGraph" Edit_DeleteGraph_FullMethodName = "/gripql.Edit/DeleteGraph" Edit_BulkDelete_FullMethodName = "/gripql.Edit/BulkDelete" @@ -957,6 +958,7 @@ type EditClient interface { AddVertex(ctx context.Context, in *GraphElement, opts ...grpc.CallOption) (*EditResult, error) AddEdge(ctx context.Context, in *GraphElement, opts ...grpc.CallOption) (*EditResult, error) BulkAdd(ctx context.Context, opts ...grpc.CallOption) (Edit_BulkAddClient, error) + BulkAddRaw(ctx context.Context, opts ...grpc.CallOption) (Edit_BulkAddRawClient, error) AddGraph(ctx context.Context, in *GraphID, opts ...grpc.CallOption) (*EditResult, error) DeleteGraph(ctx context.Context, in *GraphID, opts ...grpc.CallOption) (*EditResult, error) BulkDelete(ctx context.Context, in *DeleteData, opts ...grpc.CallOption) (*EditResult, error) @@ -1032,6 +1034,41 @@ func (x *editBulkAddClient) CloseAndRecv() (*BulkEditResult, error) { return m, nil } +func (c *editClient) BulkAddRaw(ctx context.Context, opts ...grpc.CallOption) (Edit_BulkAddRawClient, error) { + cOpts := append([]grpc.CallOption{grpc.StaticMethod()}, opts...) + stream, err := c.cc.NewStream(ctx, &Edit_ServiceDesc.Streams[1], Edit_BulkAddRaw_FullMethodName, cOpts...) + if err != nil { + return nil, err + } + x := &editBulkAddRawClient{ClientStream: stream} + return x, nil +} + +type Edit_BulkAddRawClient interface { + Send(*RawJson) error + CloseAndRecv() (*BulkEditResult, error) + grpc.ClientStream +} + +type editBulkAddRawClient struct { + grpc.ClientStream +} + +func (x *editBulkAddRawClient) Send(m *RawJson) error { + return x.ClientStream.SendMsg(m) +} + +func (x *editBulkAddRawClient) CloseAndRecv() (*BulkEditResult, error) { + if err := x.ClientStream.CloseSend(); err != nil { + return nil, err + } + m := new(BulkEditResult) + if err := x.ClientStream.RecvMsg(m); err != nil { + return nil, err + } + return m, nil +} + func (c *editClient) AddGraph(ctx context.Context, in *GraphID, opts ...grpc.CallOption) (*EditResult, error) { cOpts := append([]grpc.CallOption{grpc.StaticMethod()}, opts...) out := new(EditResult) @@ -1139,6 +1176,7 @@ type EditServer interface { AddVertex(context.Context, *GraphElement) (*EditResult, error) AddEdge(context.Context, *GraphElement) (*EditResult, error) BulkAdd(Edit_BulkAddServer) error + BulkAddRaw(Edit_BulkAddRawServer) error AddGraph(context.Context, *GraphID) (*EditResult, error) DeleteGraph(context.Context, *GraphID) (*EditResult, error) BulkDelete(context.Context, *DeleteData) (*EditResult, error) @@ -1165,6 +1203,9 @@ func (UnimplementedEditServer) AddEdge(context.Context, *GraphElement) (*EditRes func (UnimplementedEditServer) BulkAdd(Edit_BulkAddServer) error { return status.Errorf(codes.Unimplemented, "method BulkAdd not implemented") } +func (UnimplementedEditServer) BulkAddRaw(Edit_BulkAddRawServer) error { + return status.Errorf(codes.Unimplemented, "method BulkAddRaw not implemented") +} func (UnimplementedEditServer) AddGraph(context.Context, *GraphID) (*EditResult, error) { return nil, status.Errorf(codes.Unimplemented, "method AddGraph not implemented") } @@ -1270,6 +1311,32 @@ func (x *editBulkAddServer) Recv() (*GraphElement, error) { return m, nil } +func _Edit_BulkAddRaw_Handler(srv interface{}, stream grpc.ServerStream) error { + return srv.(EditServer).BulkAddRaw(&editBulkAddRawServer{ServerStream: stream}) +} + +type Edit_BulkAddRawServer interface { + SendAndClose(*BulkEditResult) error + Recv() (*RawJson, error) + grpc.ServerStream +} + +type editBulkAddRawServer struct { + grpc.ServerStream +} + +func (x *editBulkAddRawServer) SendAndClose(m *BulkEditResult) error { + return x.ServerStream.SendMsg(m) +} + +func (x *editBulkAddRawServer) Recv() (*RawJson, error) { + m := new(RawJson) + if err := x.ServerStream.RecvMsg(m); err != nil { + return nil, err + } + return m, nil +} + func _Edit_AddGraph_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { in := new(GraphID) if err := dec(in); err != nil { @@ -1512,6 +1579,11 @@ var Edit_ServiceDesc = grpc.ServiceDesc{ Handler: _Edit_BulkAdd_Handler, ClientStreams: true, }, + { + StreamName: "BulkAddRaw", + Handler: _Edit_BulkAddRaw_Handler, + ClientStreams: true, + }, }, Metadata: "gripql.proto", } diff --git a/server/api.go b/server/api.go index 758d26a7..66ccdec7 100644 --- a/server/api.go +++ b/server/api.go @@ -218,6 +218,64 @@ func (server *GripServer) addEdge(ctx context.Context, elem *gripql.GraphElement return &gripql.EditResult{Id: edge.Gid}, nil } +func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error { + var insertCount int32 + var errorCount int32 + elementStream := make(chan *gripql.RawJson, 100) + wg := &sync.WaitGroup{} + + /* sch, err := server.GetSchema(context.Background(), &gripql.GraphID{Graph: "CALIPER__schema__"}) + if err != nil { + return err + } + schcompiler := jsonschema.NewCompiler() + schcompiler.ExtractAnnotations = true + schcompiler.RegisterExtension(compile.GraphExtensionTag, compile.GraphExtMeta, compile.GraphExtCompiler{}) + //out := graph.GraphSchema{Classes: map[string]*jsonschema.Schema{}, Compiler: schcompiler} + + for _, v := range sch.Vertices { + mapped_data := v.Data.String() + log.Info("MAPPED DATA: ", mapped_data) + _, err := json.Marshal(mapped_data) + if err != nil { + log.Errorf("Error marshaling schema: %v", err) + } + + log.Infoln("HELLO : ", mapped_data) + vertexData, ok := mapped_data["vertex"].(map[string]any) + if !ok { + return fmt.Errorf("ERR") + } + if err := schcompiler.AddResourceJSON(vertexData["data"].(map[string]any)["id"].(string), schemaJSON); err == nil { + if sch.Title != "" { + out.Classes[sch.Title] = sch + } else { + log.Infof("Title not found: %s %#v\n", f, sch) + } + } + + }*/ + + for { + _, err := stream.Recv() + //log.Info("ROW: ", row) + if err == io.EOF { + break + } + + //class := graph.GetClass("Observation") + if err != nil { + log.WithFields(log.Fields{"error": err}).Error("BulkAdd: streaming error") + errorCount++ + break + } + } + close(elementStream) + wg.Wait() + return stream.SendAndClose(&gripql.BulkEditResult{InsertCount: insertCount, ErrorCount: errorCount}) + +} + // BulkAdd a stream of inputs and loads them into the graph func (server *GripServer) BulkAdd(stream gripql.Edit_BulkAddServer) error { var graphName string diff --git a/util/file_reader.go b/util/file_reader.go index 820c136f..9c8698b2 100644 --- a/util/file_reader.go +++ b/util/file_reader.go @@ -4,6 +4,7 @@ import ( "bufio" "compress/gzip" "context" + "encoding/json" "fmt" "io" "net/url" @@ -18,6 +19,7 @@ import ( "github.com/minio/minio-go/v7/pkg/credentials" "google.golang.org/protobuf/encoding/protojson" + "google.golang.org/protobuf/types/known/structpb" ) func getS3Client(u *url.URL) (*minio.Client, error) { @@ -113,6 +115,51 @@ func StreamLines(file string, chanSize int) (chan string, error) { return lineChan, nil } +func StreamRawJsonFromFile(file string, workers int) (chan *gripql.RawJson, error) { + if workers < 1 { + workers = 1 + } + if workers > 99 { + workers = 99 + } + lineChan, err := StreamLines(file, workers) + if err != nil { + return nil, err + } + jsonChan := make(chan *gripql.RawJson, workers) + var wg sync.WaitGroup + //jum := protojson.UnmarshalOptions{DiscardUnknown: true} + + for i := 0; i < workers; i++ { + wg.Add(1) + go func() { + for line := range lineChan { + rawData := &gripql.RawJson{} + var tempData map[string]any + err := json.Unmarshal([]byte(line), &tempData) + if err != nil { + log.WithFields(log.Fields{"error": err}).Errorf("Unmarshaling vertex: %s", line) + return + } + + structData, err := structpb.NewStruct(tempData) + if err != nil { + log.WithFields(log.Fields{"error": err}).Errorf("Converting to structpb.Struct: %s", line) + return + } + rawData.Data = structData + jsonChan <- rawData + } + wg.Done() + }() + } + go func() { + wg.Wait() + close(jsonChan) + }() + return jsonChan, nil +} + // StreamVerticesFromFile reads a file containing a vertex per line and // streams *gripql.Vertex objects out on a channel func StreamVerticesFromFile(file string, workers int) (chan *gripql.Vertex, error) { From 7051f514c7c2a66e529dddc985a1348897db068c Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Wed, 13 Nov 2024 12:17:43 -0800 Subject: [PATCH 07/35] working json loader --- accounts/interface.go | 1 + accounts/util.go | 3 + cmd/caliperload/main.go | 74 +++++++++++++++++++++ go.mod | 5 +- go.sum | 10 +++ server/api.go | 144 ++++++++++++++++++++++++++++++---------- util/file_reader.go | 21 ++---- 7 files changed, 206 insertions(+), 52 deletions(-) create mode 100644 cmd/caliperload/main.go diff --git a/accounts/interface.go b/accounts/interface.go index 776aaed9..b837f6df 100644 --- a/accounts/interface.go +++ b/accounts/interface.go @@ -36,6 +36,7 @@ var MethodMap = map[string]Operation{ "/gripql.Edit/AddVertex": Write, "/gripql.Edit/AddEdge": Write, "/gripql.Edit/BulkAdd": Write, + "/gripql.Edit/BulkAddRaw": Write, "/gripql.Edit/BulkDelete": Write, "/gripql.Edit/AddGraph": Write, "/gripql.Edit/DeleteGraph": Write, diff --git a/accounts/util.go b/accounts/util.go index fe13b9cd..1e49acee 100644 --- a/accounts/util.go +++ b/accounts/util.go @@ -143,6 +143,9 @@ func streamAuthInterceptor(auth Authenticate, access Access) grpc.StreamServerIn return handler(srv, &BulkWriteFilter{ss, user, access}) } else if info.FullMethod == "/gripql.Edit/BulkDelete" { return handler(srv, &BulkWriteFilter{ss, user, access}) + } else if info.FullMethod == "/gripql.Edit/BulkAddRaw" { + // Not sure if need to write custom filter for this, but existing BulkWriteFilter does not work + return handler(srv, ss) } else { log.Errorf("Unknown input streaming op %#v!!!", info) return handler(srv, ss) diff --git a/cmd/caliperload/main.go b/cmd/caliperload/main.go new file mode 100644 index 00000000..fba7d57b --- /dev/null +++ b/cmd/caliperload/main.go @@ -0,0 +1,74 @@ +package caliperload + +import ( + "github.com/bmeg/grip/gripql" + "github.com/bmeg/grip/log" + "github.com/bmeg/grip/util" + "github.com/bmeg/grip/util/rpc" + "github.com/spf13/cobra" +) + +const GRAPH = "CALIPER" + +var host = "localhost:8202" +var NdJsonFile string +var workerCount = 1 +var logRate = 10000 + +var Cmd = &cobra.Command{ + Use: "caliperload ", + Short: "Load, Validate NdJson data into Caliper graph", + Long: ``, + Args: cobra.ExactArgs(1), + RunE: func(cmd *cobra.Command, args []string) error { + NdJsonFile = args[0] + conn, err := gripql.Connect(rpc.ConfigWithDefaults(host), true) + if err != nil { + return err + } + resp, err := conn.ListGraphs() + if err != nil { + return err + } + found := false + for _, g := range resp.Graphs { + if GRAPH == g { + found = true + } + } + if !found { + log.WithFields(log.Fields{"graph": GRAPH}).Info("creating graph") + err := conn.AddGraph(GRAPH) + if err != nil { + return err + } + } + elemChan := make(chan *gripql.RawJson) + wait := make(chan bool) + go func() { + if err := conn.BulkAddRaw(elemChan); err != nil { + log.Errorf("bulk add error: %v", err) + } + wait <- false + }() + + jsonChan, err := util.StreamRawJsonFromFile(NdJsonFile, workerCount) + if err != nil { + return err + } + count := 0 + for j := range jsonChan { + count++ + if count%logRate == 0 { + log.Infof("Loaded %d vertices", count) + } + elemChan <- j + } + + close(elemChan) + <-wait + + log.WithFields(log.Fields{"graph": GRAPH}).Info("loading data") + return nil + }, +} diff --git a/go.mod b/go.mod index e66cfb48..dde4ba5f 100644 --- a/go.mod +++ b/go.mod @@ -9,8 +9,7 @@ require ( github.com/akuity/grpc-gateway-client v0.0.0-20231116134900-80c401329778 github.com/antlr/antlr4/runtime/Go/antlr v1.4.10 github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad - github.com/bmeg/jsonschema/v5 v5.3.4-0.20241021223433-465090062767 - github.com/bmeg/jsonschemagraph v0.0.3-0.20241023220331-fc0d420f80de + github.com/bmeg/jsonschemagraph v0.0.3-0.20241113190142-5e57a1561020 github.com/boltdb/bolt v1.3.1 github.com/casbin/casbin/v2 v2.97.0 github.com/cockroachdb/pebble v1.1.1 @@ -60,6 +59,7 @@ require ( github.com/alevinval/sse v1.0.2 // indirect github.com/beorn7/perks v1.0.1 // indirect github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc // indirect + github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92 // indirect github.com/casbin/govaluate v1.2.0 // indirect github.com/cespare/xxhash v1.1.0 // indirect github.com/cespare/xxhash/v2 v2.3.0 // indirect @@ -123,6 +123,7 @@ require ( github.com/rcrowley/go-metrics v0.0.0-20201227073835-cf1acfcdf475 // indirect github.com/rogpeppe/go-internal v1.12.0 // indirect github.com/rs/xid v1.5.0 // indirect + github.com/santhosh-tekuri/jsonschema v1.2.4 // indirect github.com/spf13/pflag v1.0.5 // indirect github.com/xdg-go/pbkdf2 v1.0.0 // indirect github.com/xdg-go/scram v1.1.2 // indirect diff --git a/go.sum b/go.sum index 28f7c831..9f285c4f 100644 --- a/go.sum +++ b/go.sum @@ -36,10 +36,18 @@ github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad h1:ICgBexeLB7iv/IQz4 github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad/go.mod h1:ft96Irkp72C7ZrUWRenG7LrF0NKMxXdRvsypo5Njhm4= github.com/bmeg/jsonschema/v5 v5.3.4-0.20241021223433-465090062767 h1:Xxna7pNl+RSeb8Chpo/9kqnCpINE3UYazHAEHQfKPr8= github.com/bmeg/jsonschema/v5 v5.3.4-0.20241021223433-465090062767/go.mod h1:W6ZrtycDFIco8t+VZvgCgt2mUb+o8Js25o6g+Pe/CHU= +github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92 h1:Myx/j+WxfEg+P3nDaizR1hBpjKSLgvr4ydzgp1/1pAU= +github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92/go.mod h1:6v27bSBKXyIDFqlKQbUSnHlekE1y6bDkgWCuVEaDPng= github.com/bmeg/jsonschemagraph v0.0.3-0.20241021183544-dce95050d690 h1:f7blYURrwfFXm2a5Pk8UWVgQ3Hplx6X3/5orm6vArVQ= github.com/bmeg/jsonschemagraph v0.0.3-0.20241021183544-dce95050d690/go.mod h1:q2uV/fFytbCs5tnoN59Ae6we8L3N2QIZWjdaxnsEKfQ= github.com/bmeg/jsonschemagraph v0.0.3-0.20241023220331-fc0d420f80de h1:ruds+GrDg5RyDf8b1cSBnmk4zajcvkXBeAfPzV9my0I= github.com/bmeg/jsonschemagraph v0.0.3-0.20241023220331-fc0d420f80de/go.mod h1:nqCeZ/A/5zbxrwO5IBF2+xLdaP1sjtaCckmdQIo6lJM= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241111211001-6d92b7fbe785 h1:x0j4hpAp66XUyKXZQpFoM3C1uKimdca8cHik4wqg9uM= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241111211001-6d92b7fbe785/go.mod h1:m8xz9oMFKu1fxV/febWizc4vE/Z/N7DUnrdmT68w7Cs= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241113174920-a424e30e36b5 h1:BMpZ8+q45BhK8SRtjrjz6QE1xUJ36YoffcLf3R2nGk8= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241113174920-a424e30e36b5/go.mod h1:k04v50661tQFKgYl6drQxWGf9q0dBmKhd6lwIk1rcCw= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241113190142-5e57a1561020 h1:7/dWlBDJdKYhtF31LO8zXcw/IcYsmp/MWpydk6PzuNA= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241113190142-5e57a1561020/go.mod h1:k04v50661tQFKgYl6drQxWGf9q0dBmKhd6lwIk1rcCw= github.com/boltdb/bolt v1.3.1 h1:JQmyP4ZBrce+ZQu0dY660FMfatumYDLun9hBCUVIkF4= github.com/boltdb/bolt v1.3.1/go.mod h1:clJnj/oiGkjum5o1McbSZDSLxVThjynRyGBgiAx27Ps= github.com/bufbuild/protocompile v0.4.0 h1:LbFKd2XowZvQ/kajzguUp2DC9UEIQhIq77fZZlaQsNA= @@ -347,6 +355,8 @@ github.com/rs/xid v1.5.0 h1:mKX4bl4iPYJtEIxp6CYiUuLQ/8DYMoz0PUdtGgMFRVc= github.com/rs/xid v1.5.0/go.mod h1:trrq9SKmegXys3aeAKXMUTdJsYXVwGY3RLcfgqegfbg= github.com/russross/blackfriday v1.5.2/go.mod h1:JO/DiYxRf+HjHt06OyowR9PTA263kcR/rfWxYHBV53g= github.com/russross/blackfriday/v2 v2.1.0/go.mod h1:+Rmxgy9KzJVeS9/2gXHxylqXiyQDYRxCVz55jmeOWTM= +github.com/santhosh-tekuri/jsonschema v1.2.4 h1:hNhW8e7t+H1vgY+1QeEQpveR6D4+OwKPXCfD2aieJis= +github.com/santhosh-tekuri/jsonschema v1.2.4/go.mod h1:TEAUOeZSmIxTTuHatJzrvARHiuO9LYd+cIxzgEHCQI4= github.com/santhosh-tekuri/jsonschema/v5 v5.3.1 h1:lZUw3E0/J3roVtGQ+SCrUrg3ON6NgVqpn3+iol9aGu4= github.com/santhosh-tekuri/jsonschema/v5 v5.3.1/go.mod h1:uToXkOrWAZ6/Oc07xWQrPOhJotwFIyu2bBVN41fcDUY= github.com/sclevine/agouti v3.0.0+incompatible/go.mod h1:b4WX9W9L1sfQKXeJf1mUTLZKJ48R1S7H23Ji7oFO5Bw= diff --git a/server/api.go b/server/api.go index 66ccdec7..d131113f 100644 --- a/server/api.go +++ b/server/api.go @@ -1,8 +1,10 @@ package server import ( + "encoding/json" "fmt" "io" + "strings" "sync" "github.com/bmeg/grip/engine/pipeline" @@ -11,6 +13,9 @@ import ( "github.com/bmeg/grip/gripql" "github.com/bmeg/grip/log" "github.com/bmeg/grip/util" + "github.com/bmeg/jsonschema/v5" + "github.com/bmeg/jsonschemagraph/compile" + "github.com/bmeg/jsonschemagraph/graph" "golang.org/x/net/context" "google.golang.org/grpc/codes" "google.golang.org/grpc/status" @@ -221,59 +226,126 @@ func (server *GripServer) addEdge(ctx context.Context, elem *gripql.GraphElement func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error { var insertCount int32 var errorCount int32 - elementStream := make(chan *gripql.RawJson, 100) wg := &sync.WaitGroup{} + wg.Add(1) + schcompiler := jsonschema.NewCompiler() + out := graph.GraphSchema{Classes: map[string]*jsonschema.Schema{}, Compiler: schcompiler} + go func() { + defer wg.Done() + sch, err := server.getGraph("CALIPER__schema__") + if err != nil { + log.Info("CALIPER__schema__ graph not found", err) + return + } + + jsonschema.Loaders["file"] = graph.YamlLoader + schcompiler.ExtractAnnotations = true + schcompiler.RegisterExtension(compile.GraphExtensionTag, compile.GraphExtMeta, compile.GraphExtCompiler{}) - /* sch, err := server.GetSchema(context.Background(), &gripql.GraphID{Graph: "CALIPER__schema__"}) - if err != nil { - return err - } - schcompiler := jsonschema.NewCompiler() - schcompiler.ExtractAnnotations = true - schcompiler.RegisterExtension(compile.GraphExtensionTag, compile.GraphExtMeta, compile.GraphExtCompiler{}) - //out := graph.GraphSchema{Classes: map[string]*jsonschema.Schema{}, Compiler: schcompiler} - - for _, v := range sch.Vertices { - mapped_data := v.Data.String() - log.Info("MAPPED DATA: ", mapped_data) - _, err := json.Marshal(mapped_data) - if err != nil { - log.Errorf("Error marshaling schema: %v", err) - } - - log.Infoln("HELLO : ", mapped_data) - vertexData, ok := mapped_data["vertex"].(map[string]any) - if !ok { - return fmt.Errorf("ERR") - } - if err := schcompiler.AddResourceJSON(vertexData["data"].(map[string]any)["id"].(string), schemaJSON); err == nil { - if sch.Title != "" { - out.Classes[sch.Title] = sch - } else { - log.Infof("Title not found: %s %#v\n", f, sch) - } - } - - }*/ + var ids []string + for _, v := range sch.Vertices { + mappedData := v.Data + jsonData, err := json.Marshal(mappedData) + if err != nil { + log.Errorf("Error marshaling schema: %v", err) + continue + } + var vertexData map[string]any + if err := json.Unmarshal(jsonData, &vertexData); err != nil { + log.Errorf("Error unmarshaling JSON data: %v", err) + continue + } + id, ok := vertexData["id"].(string) + ids = append(ids, id) + if !ok { + return + } + + err = schcompiler.AddResource(id, strings.NewReader(string(jsonData))) + if err != nil { + log.Info("ADD RESOURCE ERR: ", err) + return + } + } + for _, id := range ids { + sch, err := schcompiler.Compile(id) + if err != nil { + log.Info("COMPILE ERR: ", err) + return + } + out.Classes[id] = sch + } + }() + wg.Wait() + + elementStream := make(chan *gdbi.GraphElement) for { - _, err := stream.Recv() - //log.Info("ROW: ", row) + class, err := stream.Recv() if err == io.EOF { break } - //class := graph.GetClass("Observation") + gdb, err := server.getGraphDB("CALIPER") + if err != nil { + errorCount++ + continue + } + + graph, err := gdb.Graph("CALIPER") + if err != nil { + log.WithFields(log.Fields{"error": err}).Error("BulkAdd: error") + errorCount++ + continue + } + + wg.Add(1) + go func() { + defer wg.Done() + err := graph.BulkAdd(elementStream) + if err != nil { + log.WithFields(log.Fields{"graph": "CALIPER", "error": err}).Error("BulkAdd: error") + // not a good representation of the true number of errors + errorCount++ + } + }() + + classData := class.Data.AsMap() + result, err := out.Generate("http://graph-fhir.io/schema/0.0.2/"+classData["resourceType"].(string), classData, false, "ohsu-test") if err != nil { log.WithFields(log.Fields{"error": err}).Error("BulkAdd: streaming error") errorCount++ break } + + for _, element := range result { + if element.Vertex != nil { + elementStream <- &gdbi.GraphElement{ + Vertex: &gdbi.DataElement{ + ID: element.Vertex.Gid, + Data: element.Vertex.Data.AsMap(), + Label: element.Vertex.Label, + }, + Graph: "CALIPER", + } + } else { + elementStream <- &gdbi.GraphElement{ + Edge: &gdbi.DataElement{ + ID: element.Edge.Gid, + Label: element.Edge.Label, + From: element.Edge.From, + To: element.Edge.To, + Data: element.Edge.Data.AsMap(), + }, + Graph: "CALIPER", + } + } + } + } close(elementStream) wg.Wait() return stream.SendAndClose(&gripql.BulkEditResult{InsertCount: insertCount, ErrorCount: errorCount}) - } // BulkAdd a stream of inputs and loads them into the graph diff --git a/util/file_reader.go b/util/file_reader.go index 9c8698b2..2221dc46 100644 --- a/util/file_reader.go +++ b/util/file_reader.go @@ -4,7 +4,6 @@ import ( "bufio" "compress/gzip" "context" - "encoding/json" "fmt" "io" "net/url" @@ -128,29 +127,23 @@ func StreamRawJsonFromFile(file string, workers int) (chan *gripql.RawJson, erro } jsonChan := make(chan *gripql.RawJson, workers) var wg sync.WaitGroup - //jum := protojson.UnmarshalOptions{DiscardUnknown: true} + jum := protojson.UnmarshalOptions{DiscardUnknown: true} for i := 0; i < workers; i++ { wg.Add(1) go func() { + defer wg.Done() for line := range lineChan { - rawData := &gripql.RawJson{} - var tempData map[string]any - err := json.Unmarshal([]byte(line), &tempData) - if err != nil { - log.WithFields(log.Fields{"error": err}).Errorf("Unmarshaling vertex: %s", line) - return + rawData := &gripql.RawJson{ + Data: &structpb.Struct{}, } - - structData, err := structpb.NewStruct(tempData) + err := jum.Unmarshal([]byte(line), rawData.Data) if err != nil { - log.WithFields(log.Fields{"error": err}).Errorf("Converting to structpb.Struct: %s", line) - return + log.WithFields(log.Fields{"error": err}).Errorf("Unmarshaling vertex: %s", line) + continue } - rawData.Data = structData jsonChan <- rawData } - wg.Done() }() } go func() { From be854cec5a25292d118d5ffd46b70605b0bc8f25 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Thu, 14 Nov 2024 11:34:57 -0800 Subject: [PATCH 08/35] cleanup, add support for graph and project-id customization --- cmd/caliperload/main.go | 20 +- cmd/schema/main.go | 25 +-- gripql/gripql.pb.go | 478 +++++++++++++++++++++------------------- gripql/gripql.proto | 4 +- schema/graph.go | 7 +- server/api.go | 93 +++----- server/metagraphs.go | 33 +++ util/file_reader.go | 7 +- 8 files changed, 341 insertions(+), 326 deletions(-) diff --git a/cmd/caliperload/main.go b/cmd/caliperload/main.go index fba7d57b..43d2b26a 100644 --- a/cmd/caliperload/main.go +++ b/cmd/caliperload/main.go @@ -8,20 +8,22 @@ import ( "github.com/spf13/cobra" ) -const GRAPH = "CALIPER" - var host = "localhost:8202" var NdJsonFile string var workerCount = 1 +var graph string +var project_id string var logRate = 10000 var Cmd = &cobra.Command{ - Use: "caliperload ", + Use: "caliperload ", Short: "Load, Validate NdJson data into Caliper graph", Long: ``, - Args: cobra.ExactArgs(1), + Args: cobra.ExactArgs(3), RunE: func(cmd *cobra.Command, args []string) error { NdJsonFile = args[0] + graph = args[1] + project_id = args[2] conn, err := gripql.Connect(rpc.ConfigWithDefaults(host), true) if err != nil { return err @@ -32,13 +34,13 @@ var Cmd = &cobra.Command{ } found := false for _, g := range resp.Graphs { - if GRAPH == g { + if graph == g { found = true } } if !found { - log.WithFields(log.Fields{"graph": GRAPH}).Info("creating graph") - err := conn.AddGraph(GRAPH) + log.WithFields(log.Fields{"graph": graph}).Info("creating graph") + err := conn.AddGraph(graph) if err != nil { return err } @@ -52,7 +54,7 @@ var Cmd = &cobra.Command{ wait <- false }() - jsonChan, err := util.StreamRawJsonFromFile(NdJsonFile, workerCount) + jsonChan, err := util.StreamRawJsonFromFile(NdJsonFile, workerCount, graph, project_id) if err != nil { return err } @@ -68,7 +70,7 @@ var Cmd = &cobra.Command{ close(elemChan) <-wait - log.WithFields(log.Fields{"graph": GRAPH}).Info("loading data") + log.WithFields(log.Fields{"graph": graph}).Info("loading data") return nil }, } diff --git a/cmd/schema/main.go b/cmd/schema/main.go index d40c3b2e..352d1586 100644 --- a/cmd/schema/main.go +++ b/cmd/schema/main.go @@ -64,7 +64,7 @@ var getCmd = &cobra.Command{ } var loadGqlSchemafromJsonSchema = &cobra.Command{ - Use: "load", + Use: "graphql", Short: "Load graph schemas", Long: ``, Args: cobra.NoArgs, @@ -114,11 +114,11 @@ var loadGqlSchemafromJsonSchema = &cobra.Command{ var postCmd = &cobra.Command{ Use: "post", - Short: "Post graph schemas", + Short: "Post jsonschema graph schemas", Long: ``, Args: cobra.NoArgs, RunE: func(cmd *cobra.Command, args []string) error { - if jsonFile == "" && yamlFile == "" && jsonSchemaFile == "" && yamlSchemaDir == "" { + if jsonFile == "" && yamlFile == "" && jsonSchemaFile == "" { return fmt.Errorf("no schema file was provided") } @@ -173,7 +173,6 @@ var postCmd = &cobra.Command{ } } } - if jsonSchemaFile != "" && graphName != "" { log.Infof("Loading Json Schema file: %s", jsonSchemaFile) graphs, err := schema.ParseJsonSchema(jsonSchemaFile, graphName) @@ -188,22 +187,6 @@ var postCmd = &cobra.Command{ log.Debug("Posted schema: %s", g.Graph) } } - if yamlSchemaDir != "" && graphName != "" { - log.Infof("Loading Yaml Schema dir: %s", yamlSchemaDir) - graphs, err := schema.ParseYamlJsonSchema(yamlSchemaDir, graphName) - if err != nil { - log.Info("HELLO ERROR HERE: ", err) - return err - } - for _, g := range graphs { - err := conn.AddSchema(g) - if err != nil { - return err - } - log.Debug("Posted schema: %s", g.Graph) - } - - } return nil }, } @@ -218,10 +201,10 @@ func init() { pflags.StringVar(&jsonFile, "json", "", "JSON graph file") pflags.StringVar(&yamlFile, "yaml", "", "YAML graph file") pflags.StringVar(&jsonSchemaFile, "jsonSchema", "", "Json Schema") - pflags.StringVar(&yamlSchemaDir, "yamlSchemaDir", "", "Name of YAML schemas dir") pflags.StringVar(&graphName, "graphName", "", "Name of schemaGraph") gqlflags := loadGqlSchemafromJsonSchema.Flags() + gqlflags.StringVar(&host, "host", host, "grip server url") gqlflags.StringVar(&jsonSchemaFile, "jsonSchema", "", "Json Schema") gqlflags.StringVar(&yamlSchemaDir, "yamlSchemaDir", "", "Name of YAML schemas dir") gqlflags.StringVar(&graphName, "graphName", "", "Name of schemaGraph") diff --git a/gripql/gripql.pb.go b/gripql/gripql.pb.go index f79eb7ea..335dd709 100644 --- a/gripql/gripql.pb.go +++ b/gripql/gripql.pb.go @@ -3198,7 +3198,9 @@ type RawJson struct { sizeCache protoimpl.SizeCache unknownFields protoimpl.UnknownFields - Data *structpb.Struct `protobuf:"bytes,1,opt,name=data,proto3" json:"data,omitempty"` + Graph string `protobuf:"bytes,1,opt,name=graph,proto3" json:"graph,omitempty"` + ProjectId string `protobuf:"bytes,2,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"` + Data *structpb.Struct `protobuf:"bytes,3,opt,name=data,proto3" json:"data,omitempty"` } func (x *RawJson) Reset() { @@ -3233,6 +3235,20 @@ func (*RawJson) Descriptor() ([]byte, []int) { return file_gripql_proto_rawDescGZIP(), []int{41} } +func (x *RawJson) GetGraph() string { + if x != nil { + return x.Graph + } + return "" +} + +func (x *RawJson) GetProjectId() string { + if x != nil { + return x.ProjectId + } + return "" +} + func (x *RawJson) GetData() *structpb.Struct { if x != nil { return x.Data @@ -3790,238 +3806,242 @@ var file_gripql_proto_rawDesc = []byte{ 0x68, 0x12, 0x1a, 0x0a, 0x08, 0x76, 0x65, 0x72, 0x74, 0x69, 0x63, 0x65, 0x73, 0x18, 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Query { diff --git a/schema/graph.go b/schema/graph.go index 71735955..770da5af 100644 --- a/schema/graph.go +++ b/schema/graph.go @@ -287,8 +287,6 @@ func parseGraphFile(relpath string, format string, graphName string) ([]*gripql. graphs, err = ParseSchemaGraphs(relpath, graphName) case "jSchema": graphs, err = ParseJSchema(path, graphName) - case "yjSchema": - graphs, err = ParseJSchema(relpath, graphName) default: err = fmt.Errorf("unknown file format: %s", format) } @@ -327,7 +325,10 @@ func ParseJSchema(path string, graphName string) ([]*gripql.Graph, error) { delete(vals, "$id") vals["id"] = idVal } - vertex := map[string]any{"data": values, "label": key, "gid": key} + // Store the type level schema id in each schema vertex so that it can be used later when generating edges + vals["schema_id"] = data["$id"] + + vertex := map[string]any{"data": values, "label": key, "gid": data["$id"].(string) + "/" + key} graphSchema["vertices"] = append(graphSchema["vertices"].([]map[string]any), vertex) } diff --git a/server/api.go b/server/api.go index d131113f..506b0dcc 100644 --- a/server/api.go +++ b/server/api.go @@ -1,10 +1,8 @@ package server import ( - "encoding/json" "fmt" "io" - "strings" "sync" "github.com/bmeg/grip/engine/pipeline" @@ -14,7 +12,6 @@ import ( "github.com/bmeg/grip/log" "github.com/bmeg/grip/util" "github.com/bmeg/jsonschema/v5" - "github.com/bmeg/jsonschemagraph/compile" "github.com/bmeg/jsonschemagraph/graph" "golang.org/x/net/context" "google.golang.org/grpc/codes" @@ -227,72 +224,38 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error var insertCount int32 var errorCount int32 wg := &sync.WaitGroup{} - wg.Add(1) - schcompiler := jsonschema.NewCompiler() - out := graph.GraphSchema{Classes: map[string]*jsonschema.Schema{}, Compiler: schcompiler} - go func() { - defer wg.Done() - sch, err := server.getGraph("CALIPER__schema__") - if err != nil { - log.Info("CALIPER__schema__ graph not found", err) - return + var populated bool + var sch *gripql.Graph + out := &graph.GraphSchema{Classes: map[string]*jsonschema.Schema{}, Compiler: nil} + elementStream := make(chan *gdbi.GraphElement) + for { + var err error + class, err := stream.Recv() + if err == io.EOF { + break } - jsonschema.Loaders["file"] = graph.YamlLoader - schcompiler.ExtractAnnotations = true - schcompiler.RegisterExtension(compile.GraphExtensionTag, compile.GraphExtMeta, compile.GraphExtCompiler{}) - - var ids []string - for _, v := range sch.Vertices { - mappedData := v.Data - jsonData, err := json.Marshal(mappedData) - if err != nil { - log.Errorf("Error marshaling schema: %v", err) - continue - } - - var vertexData map[string]any - if err := json.Unmarshal(jsonData, &vertexData); err != nil { - log.Errorf("Error unmarshaling JSON data: %v", err) - continue - } - id, ok := vertexData["id"].(string) - ids = append(ids, id) - if !ok { - return - } - - err = schcompiler.AddResource(id, strings.NewReader(string(jsonData))) + if !populated { + sch, err = server.getGraph(class.Graph + "__schema__") if err != nil { - log.Info("ADD RESOURCE ERR: ", err) - return + log.Errorf("Error loading schemas: %v", err) + break } - } - for _, id := range ids { - sch, err := schcompiler.Compile(id) + out, err = server.LoadSchemas(class.ProjectId, sch, out) if err != nil { - log.Info("COMPILE ERR: ", err) - return + log.Errorf("Error loading schemas: %v", err) + break } - out.Classes[id] = sch - } - }() - wg.Wait() - - elementStream := make(chan *gdbi.GraphElement) - for { - class, err := stream.Recv() - if err == io.EOF { - break + populated = true } - gdb, err := server.getGraphDB("CALIPER") + gdb, err := server.getGraphDB(class.Graph) if err != nil { errorCount++ continue } - graph, err := gdb.Graph("CALIPER") + graph, err := gdb.Graph(class.Graph) if err != nil { log.WithFields(log.Fields{"error": err}).Error("BulkAdd: error") errorCount++ @@ -304,16 +267,24 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error defer wg.Done() err := graph.BulkAdd(elementStream) if err != nil { - log.WithFields(log.Fields{"graph": "CALIPER", "error": err}).Error("BulkAdd: error") + log.WithFields(log.Fields{"graph": class.Graph, "error": err}).Error("BulkAddRaw: error") // not a good representation of the true number of errors errorCount++ } }() classData := class.Data.AsMap() - result, err := out.Generate("http://graph-fhir.io/schema/0.0.2/"+classData["resourceType"].(string), classData, false, "ohsu-test") + resourceType, ok := classData["resourceType"].(string) + if !ok { + log.WithFields(log.Fields{"error": fmt.Errorf("row %s does not have required field resourceType", classData)}).Error("BulkAddRaw: streaming error") + continue + } + + // It might be better to hardcode this --> "http://graph-fhir.io/schema/0.0.2/" + schema_id := sch.GetVertices()[0].GetDataMap()["schema_id"].(string) + result, err := out.Generate(schema_id+"/"+resourceType, classData, false, class.ProjectId) if err != nil { - log.WithFields(log.Fields{"error": err}).Error("BulkAdd: streaming error") + log.WithFields(log.Fields{"error": err}).Error("BulkAddRaw: streaming error") errorCount++ break } @@ -326,7 +297,7 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error Data: element.Vertex.Data.AsMap(), Label: element.Vertex.Label, }, - Graph: "CALIPER", + Graph: element.Graph, } } else { elementStream <- &gdbi.GraphElement{ @@ -337,7 +308,7 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error To: element.Edge.To, Data: element.Edge.Data.AsMap(), }, - Graph: "CALIPER", + Graph: element.Graph, } } } diff --git a/server/metagraphs.go b/server/metagraphs.go index 856189cf..3f073a62 100644 --- a/server/metagraphs.go +++ b/server/metagraphs.go @@ -2,6 +2,7 @@ package server import ( "context" + "encoding/json" "fmt" "strings" "time" @@ -11,6 +12,9 @@ import ( "github.com/bmeg/grip/gripql" "github.com/bmeg/grip/log" "github.com/bmeg/grip/util/rpc" + "github.com/bmeg/jsonschema/v5" + "github.com/bmeg/jsonschemagraph/compile" + "github.com/bmeg/jsonschemagraph/graph" ) var schemaSuffix = "__schema__" @@ -161,3 +165,32 @@ func (server *GripServer) addFullGraph(ctx context.Context, graphName string, sc } return nil } + +func (server *GripServer) LoadSchemas(project_id string, sch *gripql.Graph, out *graph.GraphSchema) (*graph.GraphSchema, error) { + schcompiler := jsonschema.NewCompiler() + schcompiler.ExtractAnnotations = true + schcompiler.RegisterExtension(compile.GraphExtensionTag, compile.GraphExtMeta, compile.GraphExtCompiler{}) + + for _, v := range sch.Vertices { + jsonData, err := json.Marshal(v.Data) + if err != nil { + return nil, err + } + err = schcompiler.AddResource(v.Gid, strings.NewReader(string(jsonData))) + if err != nil { + log.Error("schcompiler.AddResource err: ", err) + return nil, err + } + } + for _, v := range sch.Vertices { + sch, err := schcompiler.Compile(v.Gid) + if err != nil { + log.Error("schcompiler.Compile err: ", err) + return nil, err + } + out.Classes[v.Gid] = sch + } + out.Compiler = schcompiler + + return out, nil +} diff --git a/util/file_reader.go b/util/file_reader.go index 2221dc46..18950398 100644 --- a/util/file_reader.go +++ b/util/file_reader.go @@ -114,7 +114,7 @@ func StreamLines(file string, chanSize int) (chan string, error) { return lineChan, nil } -func StreamRawJsonFromFile(file string, workers int) (chan *gripql.RawJson, error) { +func StreamRawJsonFromFile(file string, workers int, graph string, project_id string) (chan *gripql.RawJson, error) { if workers < 1 { workers = 1 } @@ -135,9 +135,12 @@ func StreamRawJsonFromFile(file string, workers int) (chan *gripql.RawJson, erro defer wg.Done() for line := range lineChan { rawData := &gripql.RawJson{ - Data: &structpb.Struct{}, + Data: &structpb.Struct{}, + Graph: graph, + ProjectId: project_id, } err := jum.Unmarshal([]byte(line), rawData.Data) + if err != nil { log.WithFields(log.Fields{"error": err}).Errorf("Unmarshaling vertex: %s", line) continue From 1fcac9f2a0c042d7080da375070cecdab7df7d19 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Fri, 15 Nov 2024 08:40:11 -0800 Subject: [PATCH 09/35] Adds tests, new schema load method --- .gitignore | 1 + accounts/interface.go | 27 +- accounts/util.go | 3 + conformance/graphs/condition.edges | 1410 +++++++++++++++++++++++++ conformance/graphs/condition.vertices | 705 +++++++++++++ conformance/tests/ot_bulk_raw.py | 33 + conformance/tests/ot_schema.py | 18 + gripql/.DS_Store | Bin 6148 -> 0 bytes gripql/client.go | 6 + gripql/gripql.gw.client.go | 8 + gripql/gripql.pb.dgw.go | 20 + gripql/gripql.pb.go | 150 +-- gripql/gripql.pb.gw.go | 111 ++ gripql/gripql.proto | 11 +- gripql/gripql_grpc.pb.go | 66 +- gripql/python/gripql/graph.py | 47 +- schema/graph.go | 32 +- server/api.go | 24 +- 18 files changed, 2553 insertions(+), 119 deletions(-) create mode 100644 conformance/graphs/condition.edges create mode 100644 conformance/graphs/condition.vertices create mode 100644 conformance/tests/ot_bulk_raw.py delete mode 100644 gripql/.DS_Store diff --git a/.gitignore b/.gitignore index a7c43db8..75eb8e5c 100644 --- a/.gitignore +++ b/.gitignore @@ -35,3 +35,4 @@ gripql/R/*.tar.gz # dev tools .idea/ .vscode/ +.DS_Store \ No newline at end of file diff --git a/accounts/interface.go b/accounts/interface.go index b837f6df..7f86438c 100644 --- a/accounts/interface.go +++ b/accounts/interface.go @@ -33,19 +33,20 @@ var MethodMap = map[string]Operation{ "/gripql.Job/ViewJob": Read, "/gripql.Job/ResumeJob": Exec, - "/gripql.Edit/AddVertex": Write, - "/gripql.Edit/AddEdge": Write, - "/gripql.Edit/BulkAdd": Write, - "/gripql.Edit/BulkAddRaw": Write, - "/gripql.Edit/BulkDelete": Write, - "/gripql.Edit/AddGraph": Write, - "/gripql.Edit/DeleteGraph": Write, - "/gripql.Edit/DeleteVertex": Write, - "/gripql.Edit/DeleteEdge": Write, - "/gripql.Edit/AddIndex": Write, - "/gripql.Edit/AddSchema": Write, - "/gripql.Edit/AddMapping": Write, - "/gripql.Edit/SampleSchema": Write, //Maybe exec? + "/gripql.Edit/AddVertex": Write, + "/gripql.Edit/AddEdge": Write, + "/gripql.Edit/BulkAdd": Write, + "/gripql.Edit/BulkAddRaw": Write, + "/gripql.Edit/BulkDelete": Write, + "/gripql.Edit/AddGraph": Write, + "/gripql.Edit/DeleteGraph": Write, + "/gripql.Edit/DeleteVertex": Write, + "/gripql.Edit/DeleteEdge": Write, + "/gripql.Edit/AddIndex": Write, + "/gripql.Edit/AddSchema": Write, + "/gripql.Edit/AddJsonSchema": Write, + "/gripql.Edit/AddMapping": Write, + "/gripql.Edit/SampleSchema": Write, //Maybe exec? "/gripql.Configure/StartPlugin": Admin, "/gripql.Configure/ListPlugin": Admin, diff --git a/accounts/util.go b/accounts/util.go index 1e49acee..ce071f6c 100644 --- a/accounts/util.go +++ b/accounts/util.go @@ -192,6 +192,9 @@ func getUnaryRequestGraph(req interface{}, info *grpc.UnaryServerInfo) (string, case "/gripql.Edit/AddSchema", "/gripql.Edit/AddMapping": o := req.(*gripql.Graph) return o.Graph, nil + case "/gripql.Edit/AddJsonSchema": + o := req.(*gripql.RawJson) + return o.Graph, nil case "/gripql.Edit/SampleSchema": o := req.(*gripql.GraphID) return o.Graph, nil diff --git a/conformance/graphs/condition.edges b/conformance/graphs/condition.edges new file mode 100644 index 00000000..ad8413fe --- /dev/null +++ b/conformance/graphs/condition.edges @@ -0,0 +1,1410 @@ +{"gid":"0b12af4a-a30b-5082-ac6e-3d2b8c38f63e","label":"subject_Patient","from":"838e42fb-a65d-4039-9f83-59c37b1ae889","to":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d"} +{"gid":"22d7bdcc-bc35-5232-b1c7-ba99eaa60a82","label":"condition","from":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d","to":"838e42fb-a65d-4039-9f83-59c37b1ae889"} +{"gid":"088eeff8-cc5c-5a31-ad1a-d41e4b2cda89","label":"subject_Patient","from":"9be917be-2127-465f-9be4-92eb2a37c347","to":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d"} +{"gid":"3c3e30e8-6a80-5ef3-9e61-2ff8fc10334e","label":"condition","from":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d","to":"9be917be-2127-465f-9be4-92eb2a37c347"} +{"gid":"94d9d386-9b57-5d79-9d8e-6bd0a51d38b8","label":"subject_Patient","from":"bc0e8275-bad1-4ebc-9c59-351a1f2c3783","to":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d"} +{"gid":"34dc0a94-0d19-5605-98a7-a7430b7e527b","label":"condition","from":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d","to":"bc0e8275-bad1-4ebc-9c59-351a1f2c3783"} +{"gid":"1c245fd6-57d3-57dc-990d-449fccbb334a","label":"subject_Patient","from":"0ac3809c-93d9-4439-8960-2211dbef39d1","to":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d"} +{"gid":"e204757e-0347-52a1-a527-7283b0f52d3b","label":"condition","from":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d","to":"0ac3809c-93d9-4439-8960-2211dbef39d1"} +{"gid":"e370404a-f711-57c2-8dcb-96a24786deb8","label":"subject_Patient","from":"f3224028-85f8-4a05-8e07-f591d46aacbe","to":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d"} +{"gid":"fb5cb533-d134-56bf-9e64-0f86855a7ba5","label":"condition","from":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d","to":"f3224028-85f8-4a05-8e07-f591d46aacbe"} +{"gid":"be5fdbd7-15b8-5645-9646-66bc212b9e3e","label":"subject_Patient","from":"710d9f56-ef03-49f2-947e-7a3bdc04ea10","to":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d"} +{"gid":"f5f36232-5235-58ce-a698-8b88f2280773","label":"condition","from":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d","to":"710d9f56-ef03-49f2-947e-7a3bdc04ea10"} +{"gid":"e666c17e-adca-57fd-a874-a0b6421e10cb","label":"subject_Patient","from":"4a679a75-0fea-46ec-b573-094ebea07ffd","to":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d"} +{"gid":"5e828bde-a221-5757-8bed-d2c7387679cc","label":"condition","from":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d","to":"4a679a75-0fea-46ec-b573-094ebea07ffd"} +{"gid":"a99b4125-596b-5f6b-857e-6b0df04a9968","label":"subject_Patient","from":"a81d60c2-25a0-421e-a889-56f6cec33fb0","to":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d"} +{"gid":"8eb52a1b-475d-55ae-9cda-d404e0df0037","label":"condition","from":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d","to":"a81d60c2-25a0-421e-a889-56f6cec33fb0"} +{"gid":"78eb6d3c-2511-5373-91c1-169b43978de6","label":"subject_Patient","from":"dae37142-de1e-41e2-be8f-f2e7bdb54c3b","to":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d"} +{"gid":"8dcddd88-aa4d-5d96-81b9-b81b36128669","label":"condition","from":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d","to":"dae37142-de1e-41e2-be8f-f2e7bdb54c3b"} +{"gid":"4a6c8595-0f2f-50ba-82e8-da50c1f569f0","label":"subject_Patient","from":"0850bd5d-750e-4866-9d9c-52f3af435d46","to":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d"} +{"gid":"d6ba0f74-3ede-54da-af75-a5aa55d0ed16","label":"condition","from":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d","to":"0850bd5d-750e-4866-9d9c-52f3af435d46"} +{"gid":"7960fe3a-c382-5dab-91aa-15364f4f3b4d","label":"subject_Patient","from":"6c2b367a-871d-44ea-9b2a-b1012d320c1a","to":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d"} +{"gid":"79b34a6e-1a71-56ef-9bb2-cc6b86a380b8","label":"condition","from":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d","to":"6c2b367a-871d-44ea-9b2a-b1012d320c1a"} +{"gid":"def97483-f1d2-569b-8ef7-f4fca3cc6411","label":"subject_Patient","from":"b57380ff-0b9d-42e8-9228-5577f7013d61","to":"b09d2e55-2754-448f-b058-85e15d8820ea"} +{"gid":"3fcfc7e7-7af3-5d9a-8cfc-7bd4139c9175","label":"condition","from":"b09d2e55-2754-448f-b058-85e15d8820ea","to":"b57380ff-0b9d-42e8-9228-5577f7013d61"} +{"gid":"0011d30d-f061-54a0-89fe-eed77828a599","label":"subject_Patient","from":"73ef1125-9c5f-4fee-ba75-39a792d68f4c","to":"b09d2e55-2754-448f-b058-85e15d8820ea"} 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(disorder)"},"encounter":{"reference":"Encounter/615a4aba-dcfc-4f7d-bfc0-3e7365a0796b"},"id":"395195f1-6c24-4237-853d-b6a0d124920c","links":[{"href":"Patient/967846d4-dedb-4f79-8607-391185082f20","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:58:15.433+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#OVe244bnwrrpZW2v","versionId":"1"},"onsetDateTime":"1958-10-05T00:03:56-04:00","recordedDate":"1958-10-05T00:03:56-04:00","resourceType":"Condition","subject":{"reference":"Patient/967846d4-dedb-4f79-8607-391185082f20"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} +{"gid":"c0b79ad7-6eaf-45e6-b8c2-1a32d807b5fc","label":"Condition","data":{"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"15777000","display":"Prediabetes","system":"http://snomed.info/sct"}],"text":"Prediabetes"},"encounter":{"reference":"Encounter/615a4aba-dcfc-4f7d-bfc0-3e7365a0796b"},"id":"c0b79ad7-6eaf-45e6-b8c2-1a32d807b5fc","links":[{"href":"Patient/967846d4-dedb-4f79-8607-391185082f20","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:58:15.433+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#OVe244bnwrrpZW2v","versionId":"1"},"onsetDateTime":"1958-10-05T00:03:56-04:00","recordedDate":"1958-10-05T00:03:56-04:00","resourceType":"Condition","subject":{"reference":"Patient/967846d4-dedb-4f79-8607-391185082f20"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} +{"gid":"a4d552ba-28c3-4ece-b770-c076a17c109a","label":"Condition","data":{"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"36971009","display":"Sinusitis (disorder)","system":"http://snomed.info/sct"}],"text":"Sinusitis (disorder)"},"encounter":{"reference":"Encounter/4348b5a5-db4c-437f-b2ca-d5a885082406"},"id":"a4d552ba-28c3-4ece-b770-c076a17c109a","links":[{"href":"Patient/967846d4-dedb-4f79-8607-391185082f20","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:58:15.433+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#OVe244bnwrrpZW2v","versionId":"1"},"onsetDateTime":"1977-06-20T00:03:56-04:00","recordedDate":"1977-06-20T00:03:56-04:00","resourceType":"Condition","subject":{"reference":"Patient/967846d4-dedb-4f79-8607-391185082f20"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} +{"gid":"bcbb2157-6c06-4b89-9ee3-b1e78e7d7e7c","label":"Condition","data":{"abatementDateTime":"1974-06-20T01:02:56-04:00","category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"resolved","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"62106007","display":"Concussion with no loss of consciousness","system":"http://snomed.info/sct"}],"text":"Concussion with no loss of consciousness"},"encounter":{"reference":"Encounter/be9d2b04-14a1-48c1-9a99-768141b82ac6"},"id":"bcbb2157-6c06-4b89-9ee3-b1e78e7d7e7c","links":[{"href":"Patient/967846d4-dedb-4f79-8607-391185082f20","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:58:15.433+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#OVe244bnwrrpZW2v","versionId":"1"},"onsetDateTime":"1974-05-21T01:02:56-04:00","recordedDate":"1974-05-21T01:02:56-04:00","resourceType":"Condition","subject":{"reference":"Patient/967846d4-dedb-4f79-8607-391185082f20"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} +{"gid":"f5110d10-b5e8-436b-ae82-b8095f6f0f3c","label":"Condition","data":{"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"410429000","display":"Cardiac Arrest","system":"http://snomed.info/sct"}],"text":"Cardiac Arrest"},"encounter":{"reference":"Encounter/ffca33b8-1265-4db8-bb47-1dc0c9a27832"},"id":"f5110d10-b5e8-436b-ae82-b8095f6f0f3c","links":[{"href":"Patient/967846d4-dedb-4f79-8607-391185082f20","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:58:15.433+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#OVe244bnwrrpZW2v","versionId":"1"},"onsetDateTime":"1977-06-26T00:03:56-04:00","recordedDate":"1977-06-26T00:03:56-04:00","resourceType":"Condition","subject":{"reference":"Patient/967846d4-dedb-4f79-8607-391185082f20"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} +{"gid":"afd72eb0-fce2-43ee-b940-4d93fde72e77","label":"Condition","data":{"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"429007001","display":"History of cardiac arrest (situation)","system":"http://snomed.info/sct"}],"text":"History of cardiac arrest (situation)"},"encounter":{"reference":"Encounter/ffca33b8-1265-4db8-bb47-1dc0c9a27832"},"id":"afd72eb0-fce2-43ee-b940-4d93fde72e77","links":[{"href":"Patient/967846d4-dedb-4f79-8607-391185082f20","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:58:15.433+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#OVe244bnwrrpZW2v","versionId":"1"},"onsetDateTime":"1977-06-26T00:03:56-04:00","recordedDate":"1977-06-26T00:03:56-04:00","resourceType":"Condition","subject":{"reference":"Patient/967846d4-dedb-4f79-8607-391185082f20"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} +{"gid":"0c884b5b-33ad-43cb-95cd-4745f4cad12e","label":"Condition","data":{"abatementDateTime":"1973-07-03T00:03:56-04:00","category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"resolved","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"444814009","display":"Viral sinusitis (disorder)","system":"http://snomed.info/sct"}],"text":"Viral sinusitis (disorder)"},"encounter":{"reference":"Encounter/f906d761-dac4-4325-959c-5090182a6a78"},"id":"0c884b5b-33ad-43cb-95cd-4745f4cad12e","links":[{"href":"Patient/967846d4-dedb-4f79-8607-391185082f20","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:58:15.433+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#OVe244bnwrrpZW2v","versionId":"1"},"onsetDateTime":"1973-06-19T00:03:56-04:00","recordedDate":"1973-06-19T00:03:56-04:00","resourceType":"Condition","subject":{"reference":"Patient/967846d4-dedb-4f79-8607-391185082f20"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} \ No newline at end of file diff --git a/conformance/tests/ot_bulk_raw.py b/conformance/tests/ot_bulk_raw.py new file mode 100644 index 00000000..5d9f149d --- /dev/null +++ b/conformance/tests/ot_bulk_raw.py @@ -0,0 +1,33 @@ +import requests + + +def test_bulk_add_raw(man): + errors = [] + + G = man.setGraph("condition") + + # Probably don't want to add a 2MB schema file to the repo so get it via requests instead + res = requests.get("https://raw.githubusercontent.com/bmeg/iceberg/f1724941fe47df24846135fb515d1b89e791cee3/schemas/graph/graph-fhir.json") + res.raise_for_status() + s = G.addJsonSchema(res.json()) + + bulkRaw = G.bulkAddRaw() + # fhir data from https://github.com/bmeg/iceberg-schema-tools/tree/main/tests/fixtures/simplify-fhir-hypermedia + bulkRaw.addJson(data={"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"230690007","display":"Stroke","system":"http://snomed.info/sct"}],"text":"Stroke"},"encounter":{"reference":"Encounter/f78a1442-683a-4ea2-adca-161902be19cb"},"id":"838e42fb-a65d-4039-9f83-59c37b1ae889","links":[{"href":"Patient/45c11dad-2b38-4c8e-822e-7abff8a1ee1d","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:21:56.658+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#DmW9sueQ4yuQdyA9","versionId":"1"},"onsetDateTime":"2013-08-24T15:40:53-04:00","recordedDate":"2013-08-24T15:40:53-04:00","resourceType":"Condition","subject":{"reference":"Patient/45c11dad-2b38-4c8e-822e-7abff8a1ee1d"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}) + bulkRaw.addJson(data={"resourceType":"Patient","id":"041095c0-41b7-4cad-be5d-5942f5e72331","meta":{"versionId":"1","lastUpdated":"2023-01-26T15:09:27.533+00:00","source":"#2bs0ExNirFINpsaq","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient"]},"text":{"status":"generated","div":"
Generated by Synthea.Version identifier: v2.6.1-174-g66c40fa7\n . Person seed: -5631757156564495430 Population seed: 1626964256551
"},"extension":[{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-race","extension":[{"url":"ombCategory","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2106-3","display":"White"}},{"url":"text","valueString":"White"}]},{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity","extension":[{"url":"ombCategory","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2186-5","display":"Non Hispanic or Latino"}},{"url":"text","valueString":"Non Hispanic or Latino"}]},{"url":"http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName","valueString":"Johnie961 Howe413"},{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex","valueCode":"M"},{"url":"http://hl7.org/fhir/StructureDefinition/patient-birthPlace","valueAddress":{"city":"Leominster","state":"Massachusetts","country":"US"}},{"url":"http://synthetichealth.github.io/synthea/disability-adjusted-life-years","valueDecimal":11.356925230821238},{"url":"http://synthetichealth.github.io/synthea/quality-adjusted-life-years","valueDecimal":84.64307476917877}],"identifier":[{"system":"https://github.com/synthetichealth/synthea","value":"98a6c929-b2cb-9719-ba06-ae2d693d1964"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"MR","display":"Medical Record Number"}],"text":"Medical Record Number"},"system":"http://hospital.smarthealthit.org","value":"98a6c929-b2cb-9719-ba06-ae2d693d1964"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"SS","display":"Social Security Number"}],"text":"Social Security Number"},"system":"http://hl7.org/fhir/sid/us-ssn","value":"999-54-8135"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"DL","display":"Driver's License"}],"text":"Driver's License"},"system":"urn:oid:2.16.840.1.113883.4.3.25","value":"S99944955"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"PPN","display":"Passport Number"}],"text":"Passport Number"},"system":"http://standardhealthrecord.org/fhir/StructureDefinition/passportNumber","value":"X88746034X"}],"name":[{"use":"official","family":"Schiller186","given":["Stewart672"],"prefix":["Mr."]}],"telecom":[{"system":"phone","value":"555-164-3643","use":"home"}],"gender":"male","birthDate":"1924-09-05","address":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/geolocation","extension":[{"url":"latitude","valueDecimal":42.251447299625795},{"url":"longitude","valueDecimal":-71.10142275622101}]}],"line":["955 Willms Manor"],"city":"Milton","state":"MA","country":"US"}],"maritalStatus":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v3-MaritalStatus","code":"M","display":"M"}],"text":"M"},"multipleBirthBoolean":False,"communication":[{"language":{"coding":[{"system":"urn:ietf:bcp:47","code":"en-US","display":"English"}],"text":"English"}}],"links":[]}) + + err = bulkRaw.execute() + if err["insertCount"] != 4: + errors.append(f"Wrong number of inserted vertices {err['insertCount']} != 4") + if err["errorCount"] != 0: + errors.append(f"Wrong number of errors {err['errorCount']} != 0") + + edge = G.getVertex("838e42fb-a65d-4039-9f83-59c37b1ae889") + if "gid" not in edge and edge["gid"] != "838e42fb-a65d-4039-9f83-59c37b1ae889": + errors.append(f"bulkraw inserted edge with id 838e42fb-a65d-4039-9f83-59c37b1ae889 not found") + + labels = G.listLabels() + if labels != {'vertexLabels': ['Condition', 'http://graph-fhir.io/schema/0.0.2/Condition', 'http://graph-fhir.io/schema/0.0.2/Patient'], 'edgeLabels': ['condition', 'subject_Patient']}: + errors.append(f"After insert operations {labels} != expected {{'vertexLabels': ['Condition', 'http://graph-fhir.io/schema/0.0.2/Condition', 'http://graph-fhir.io/schema/0.0.2/Patient'], 'edgeLabels': ['condition', 'subject_Patient']}}") + + return errors diff --git a/conformance/tests/ot_schema.py b/conformance/tests/ot_schema.py index 2493a9f0..e438305d 100644 --- a/conformance/tests/ot_schema.py +++ b/conformance/tests/ot_schema.py @@ -1,4 +1,5 @@ +import requests def test_getscheama(man): errors = [] @@ -26,5 +27,22 @@ def test_getscheama(man): errors.append("Incorrect labels returned from sampling: %s != %s " % (eLabels, eExpectedLabels) ) + return errors + + +def test_post_json_schema(man): + errors = [] + G = man.setGraph("condition") + # Probably don't want to add a 2MB schema file to the repo so get it via requests instead + res = requests.get("https://raw.githubusercontent.com/bmeg/iceberg/f1724941fe47df24846135fb515d1b89e791cee3/schemas/graph/graph-fhir.json") + res.raise_for_status() + s = G.addJsonSchema(res.json()) + fetched_schema = G.getSchema() + len_vertices = len(fetched_schema['vertices']) + if len_vertices != 137: + errors.append(f"incorrect number of vertices in schema {len_vertices} != 137") + len_edges = len(fetched_schema['edges']) + if len_edges != 0: + errors.append(f"incorrect number of edges in schema {len_vertices} != 0") return errors diff --git a/gripql/.DS_Store b/gripql/.DS_Store deleted file mode 100644 index 58751a7107855ff167be4b2d7d2a7fb6717ca01b..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 6148 zcmeHKQA+|r5S~>_MFJlRd|c>NNG&Sqh1=y@^aVx3-=~Ddn&Ifu8tDHyOvR?&y+c zXIe+W-0lYFVSmyoZysxvbVJo2nS`*{$B?UwQ1$errN^oln_S;66j3_m%5=Kh+^@>| z!Qrebr_DyKD)*X=*{oRD+TJ-j?c7HXNG$^}c|9r&@H7(UUXNHj(Utg=;Z{O-H|Uah}7}qD=?knh)XLEL?{o%-iw# z(u9NXEb_<6k7wG#CPm4xC_ miytXyn5!6L=_;D{|Fcwcwh#8l!153U5cLo diff --git a/gripql/client.go b/gripql/client.go index 535e8d27..2d8deaf1 100644 --- a/gripql/client.go +++ b/gripql/client.go @@ -66,6 +66,12 @@ func (client Client) AddSchema(graph *Graph) error { return err } +// AddJsonSchema adds a schema for a graph. +func (client Client) AddJsonSchema(json *RawJson) error { + _, err := client.EditC.AddJsonSchema(context.Background(), json) + return err +} + func (client Client) DeleteEdge(graph string, id string) error { _, err := client.EditC.DeleteEdge(context.Background(), &ElementID{Graph: graph, Id: id}) return err diff --git a/gripql/gripql.gw.client.go b/gripql/gripql.gw.client.go index a5c6f4ad..bb1f3c9d 100644 --- a/gripql/gripql.gw.client.go +++ b/gripql/gripql.gw.client.go @@ -177,6 +177,7 @@ type EditGatewayClient interface { AddIndex(context.Context, *IndexID) (*EditResult, error) DeleteIndex(context.Context, *IndexID) (*EditResult, error) AddSchema(context.Context, *Graph) (*EditResult, error) + AddJsonSchema(context.Context, *RawJson) (*EditResult, error) SampleSchema(context.Context, *GraphID) (*Graph, error) AddMapping(context.Context, *Graph) (*EditResult, error) } @@ -265,6 +266,13 @@ func (c *editGatewayClient) AddSchema(ctx context.Context, req *Graph) (*EditRes return gateway.DoRequest[EditResult](ctx, gwReq) } +func (c *editGatewayClient) AddJsonSchema(ctx context.Context, req *RawJson) (*EditResult, error) { + gwReq := c.gwc.NewRequest("POST", "/v1/graph/{graph}/jsonschema") + gwReq.SetPathParam("graph", fmt.Sprintf("%v", req.Graph)) + gwReq.SetBody(req) + return gateway.DoRequest[EditResult](ctx, gwReq) +} + func (c *editGatewayClient) SampleSchema(ctx context.Context, req *GraphID) (*Graph, error) { gwReq := c.gwc.NewRequest("GET", "/v1/graph/{graph}/schema-sample") gwReq.SetPathParam("graph", fmt.Sprintf("%v", req.Graph)) diff --git a/gripql/gripql.pb.dgw.go b/gripql/gripql.pb.dgw.go index 075ea8f6..bbdce609 100644 --- a/gripql/gripql.pb.dgw.go +++ b/gripql/gripql.pb.dgw.go @@ -1112,6 +1112,26 @@ func (shim *EditDirectClient) AddSchema(ctx context.Context, in *Graph, opts ... return shim.server.AddSchema(ictx, in) } +//AddJsonSchema shim +func (shim *EditDirectClient) AddJsonSchema(ctx context.Context, in *RawJson, opts ...grpc.CallOption) (*EditResult, error) { + md, _ := metadata.FromOutgoingContext(ctx) + ictx := metadata.NewIncomingContext(ctx, md) + if shim.unaryServerInt != nil { + handler := func(ctx context.Context, req interface{}) (interface{}, error) { + return shim.server.AddJsonSchema(ctx, req.(*RawJson)) + } + info := grpc.UnaryServerInfo{ + FullMethod: "/gripql.Edit/AddJsonSchema", + } + o, err := shim.unaryServerInt(ictx, in, &info, handler) + if o == nil { + return nil, err + } + return o.(*EditResult), err + } + return shim.server.AddJsonSchema(ictx, in) +} + //SampleSchema shim func (shim *EditDirectClient) SampleSchema(ctx context.Context, in *GraphID, opts ...grpc.CallOption) (*Graph, error) { md, _ := metadata.FromOutgoingContext(ctx) diff --git a/gripql/gripql.pb.go b/gripql/gripql.pb.go index 335dd709..c80f0c1f 100644 --- a/gripql/gripql.pb.go +++ b/gripql/gripql.pb.go @@ -3946,7 +3946,7 @@ var file_gripql_proto_rawDesc = []byte{ 0x52, 0x65, 0x73, 0x75, 0x6c, 0x74, 0x22, 0x27, 0x82, 0xd3, 0xe4, 0x93, 0x02, 0x21, 0x3a, 0x01, 0x2a, 0x22, 0x1c, 0x2f, 0x76, 0x31, 0x2f, 0x67, 0x72, 0x61, 0x70, 0x68, 0x2f, 0x7b, 0x67, 0x72, 0x61, 0x70, 0x68, 0x7d, 0x2f, 0x6a, 0x6f, 0x62, 0x2d, 0x72, 0x65, 0x73, 0x75, 0x6d, 0x65, 0x30, - 0x01, 0x32, 0xc4, 0x09, 0x0a, 0x04, 0x45, 0x64, 0x69, 0x74, 0x12, 0x5f, 0x0a, 0x09, 0x41, 0x64, + 0x01, 0x32, 0xa3, 0x0a, 0x0a, 0x04, 0x45, 0x64, 0x69, 0x74, 0x12, 0x5f, 0x0a, 0x09, 0x41, 0x64, 0x64, 0x56, 0x65, 0x72, 0x74, 0x65, 0x78, 0x12, 0x14, 0x2e, 0x67, 0x72, 0x69, 0x70, 0x71, 0x6c, 0x2e, 0x47, 0x72, 0x61, 0x70, 0x68, 0x45, 0x6c, 0x65, 0x6d, 0x65, 0x6e, 0x74, 0x1a, 0x12, 0x2e, 0x67, 0x72, 0x69, 0x70, 0x71, 0x6c, 0x2e, 0x45, 0x64, 0x69, 0x74, 0x52, 0x65, 0x73, 0x75, 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gripql.GraphID - 3, // 94: gripql.Edit.AddMapping:input_type -> gripql.Graph - 45, // 95: gripql.Configure.StartPlugin:input_type -> gripql.PluginConfig - 38, // 96: gripql.Configure.ListPlugins:input_type -> gripql.Empty - 38, // 97: gripql.Configure.ListDrivers:input_type -> gripql.Empty - 27, // 98: gripql.Query.Traversal:output_type -> gripql.QueryResult - 25, // 99: gripql.Query.GetVertex:output_type -> gripql.Vertex - 26, // 100: gripql.Query.GetEdge:output_type -> gripql.Edge - 37, // 101: gripql.Query.GetTimestamp:output_type -> gripql.Timestamp - 3, // 102: gripql.Query.GetSchema:output_type -> gripql.Graph - 3, // 103: gripql.Query.GetMapping:output_type -> gripql.Graph - 39, // 104: gripql.Query.ListGraphs:output_type -> gripql.ListGraphsResponse - 40, // 105: gripql.Query.ListIndices:output_type -> gripql.ListIndicesResponse - 41, // 106: gripql.Query.ListLabels:output_type -> gripql.ListLabelsResponse - 42, // 107: gripql.Query.ListTables:output_type -> gripql.TableInfo - 28, // 108: gripql.Job.Submit:output_type -> gripql.QueryJob - 28, // 109: gripql.Job.ListJobs:output_type -> gripql.QueryJob - 30, // 110: gripql.Job.SearchJobs:output_type -> gripql.JobStatus - 30, // 111: gripql.Job.DeleteJob:output_type -> gripql.JobStatus - 30, // 112: gripql.Job.GetJob:output_type -> gripql.JobStatus - 27, // 113: gripql.Job.ViewJob:output_type -> gripql.QueryResult - 27, // 114: gripql.Job.ResumeJob:output_type -> gripql.QueryResult - 31, // 115: gripql.Edit.AddVertex:output_type -> gripql.EditResult - 31, // 116: gripql.Edit.AddEdge:output_type -> gripql.EditResult - 32, // 117: gripql.Edit.BulkAdd:output_type -> gripql.BulkEditResult - 32, // 118: gripql.Edit.BulkAddRaw:output_type -> gripql.BulkEditResult - 31, // 119: gripql.Edit.AddGraph:output_type -> gripql.EditResult - 31, // 120: gripql.Edit.DeleteGraph:output_type -> gripql.EditResult - 31, // 121: gripql.Edit.BulkDelete:output_type -> gripql.EditResult - 31, // 122: gripql.Edit.DeleteVertex:output_type -> gripql.EditResult - 31, // 123: gripql.Edit.DeleteEdge:output_type -> gripql.EditResult - 31, // 124: gripql.Edit.AddIndex:output_type -> gripql.EditResult - 31, // 125: gripql.Edit.DeleteIndex:output_type -> gripql.EditResult - 31, // 126: gripql.Edit.AddSchema:output_type -> gripql.EditResult - 3, // 127: gripql.Edit.SampleSchema:output_type -> gripql.Graph - 31, // 128: gripql.Edit.AddMapping:output_type -> gripql.EditResult - 46, // 129: gripql.Configure.StartPlugin:output_type -> gripql.PluginStatus - 48, // 130: gripql.Configure.ListPlugins:output_type -> gripql.ListPluginsResponse - 47, // 131: gripql.Configure.ListDrivers:output_type -> gripql.ListDriversResponse - 98, // [98:132] is the sub-list for method output_type - 64, // [64:98] is the sub-list for method input_type + 44, // 93: gripql.Edit.AddJsonSchema:input_type -> gripql.RawJson + 34, // 94: gripql.Edit.SampleSchema:input_type -> gripql.GraphID + 3, // 95: gripql.Edit.AddMapping:input_type -> gripql.Graph + 45, // 96: gripql.Configure.StartPlugin:input_type -> gripql.PluginConfig + 38, // 97: gripql.Configure.ListPlugins:input_type -> gripql.Empty + 38, // 98: gripql.Configure.ListDrivers:input_type -> gripql.Empty + 27, // 99: gripql.Query.Traversal:output_type -> gripql.QueryResult + 25, // 100: gripql.Query.GetVertex:output_type -> gripql.Vertex + 26, // 101: gripql.Query.GetEdge:output_type -> gripql.Edge + 37, // 102: gripql.Query.GetTimestamp:output_type -> gripql.Timestamp + 3, // 103: gripql.Query.GetSchema:output_type -> gripql.Graph + 3, // 104: gripql.Query.GetMapping:output_type -> gripql.Graph + 39, // 105: gripql.Query.ListGraphs:output_type -> gripql.ListGraphsResponse + 40, // 106: gripql.Query.ListIndices:output_type -> gripql.ListIndicesResponse + 41, // 107: gripql.Query.ListLabels:output_type -> gripql.ListLabelsResponse + 42, // 108: gripql.Query.ListTables:output_type -> gripql.TableInfo + 28, // 109: gripql.Job.Submit:output_type -> gripql.QueryJob + 28, // 110: gripql.Job.ListJobs:output_type -> gripql.QueryJob + 30, // 111: gripql.Job.SearchJobs:output_type -> gripql.JobStatus + 30, // 112: gripql.Job.DeleteJob:output_type -> gripql.JobStatus + 30, // 113: gripql.Job.GetJob:output_type -> gripql.JobStatus + 27, // 114: gripql.Job.ViewJob:output_type -> gripql.QueryResult + 27, // 115: gripql.Job.ResumeJob:output_type -> gripql.QueryResult + 31, // 116: gripql.Edit.AddVertex:output_type -> gripql.EditResult + 31, // 117: gripql.Edit.AddEdge:output_type -> gripql.EditResult + 32, // 118: gripql.Edit.BulkAdd:output_type -> gripql.BulkEditResult + 32, // 119: gripql.Edit.BulkAddRaw:output_type -> gripql.BulkEditResult + 31, // 120: gripql.Edit.AddGraph:output_type -> gripql.EditResult + 31, // 121: gripql.Edit.DeleteGraph:output_type -> gripql.EditResult + 31, // 122: gripql.Edit.BulkDelete:output_type -> gripql.EditResult + 31, // 123: gripql.Edit.DeleteVertex:output_type -> gripql.EditResult + 31, // 124: gripql.Edit.DeleteEdge:output_type -> gripql.EditResult + 31, // 125: gripql.Edit.AddIndex:output_type -> gripql.EditResult + 31, // 126: gripql.Edit.DeleteIndex:output_type -> gripql.EditResult + 31, // 127: gripql.Edit.AddSchema:output_type -> gripql.EditResult + 31, // 128: gripql.Edit.AddJsonSchema:output_type -> gripql.EditResult + 3, // 129: gripql.Edit.SampleSchema:output_type -> gripql.Graph + 31, // 130: gripql.Edit.AddMapping:output_type -> gripql.EditResult + 46, // 131: gripql.Configure.StartPlugin:output_type -> gripql.PluginStatus + 48, // 132: gripql.Configure.ListPlugins:output_type -> gripql.ListPluginsResponse + 47, // 133: gripql.Configure.ListDrivers:output_type -> gripql.ListDriversResponse + 99, // [99:134] is the sub-list for method output_type + 64, // [64:99] is the sub-list for method input_type 64, // [64:64] is the sub-list for extension type_name 64, // [64:64] is the sub-list for extension extendee 0, // [0:64] is the sub-list for field type_name diff --git a/gripql/gripql.pb.gw.go b/gripql/gripql.pb.gw.go index ff2547f2..07e581fe 100644 --- a/gripql/gripql.pb.gw.go +++ b/gripql/gripql.pb.gw.go @@ -1620,6 +1620,66 @@ func local_request_Edit_AddSchema_0(ctx context.Context, marshaler runtime.Marsh } +func request_Edit_AddJsonSchema_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) { + var protoReq RawJson + var metadata runtime.ServerMetadata + + if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF { + return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err) + } + + var ( + val string + ok bool + err error + _ = err + ) + + val, ok = pathParams["graph"] + if !ok { + return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph") + } + + protoReq.Graph, err = runtime.String(val) + if err != nil { + return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err) + } + + msg, err := client.AddJsonSchema(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD)) + return msg, metadata, err + +} + +func local_request_Edit_AddJsonSchema_0(ctx context.Context, marshaler runtime.Marshaler, server EditServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) { + var protoReq RawJson + var metadata runtime.ServerMetadata + + if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF { + return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err) + } + + var ( + val string + ok bool + err error + _ = err + ) + + val, ok = pathParams["graph"] + if !ok { + return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph") + } + + protoReq.Graph, err = runtime.String(val) + if err != nil { + return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err) + } + + msg, err := server.AddJsonSchema(ctx, &protoReq) + return msg, metadata, err + +} + func request_Edit_SampleSchema_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) { var protoReq GraphID var metadata runtime.ServerMetadata @@ -2436,6 +2496,31 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve }) + mux.Handle("POST", pattern_Edit_AddJsonSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) { + ctx, cancel := context.WithCancel(req.Context()) + defer cancel() + var stream runtime.ServerTransportStream + ctx = grpc.NewContextWithServerTransportStream(ctx, &stream) + inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req) + var err error + var annotatedContext context.Context + annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddJsonSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/jsonschema")) + if err != nil { + runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err) + return + } + resp, md, err := local_request_Edit_AddJsonSchema_0(annotatedContext, inboundMarshaler, server, req, pathParams) + md.HeaderMD, md.TrailerMD = metadata.Join(md.HeaderMD, stream.Header()), metadata.Join(md.TrailerMD, stream.Trailer()) + annotatedContext = runtime.NewServerMetadataContext(annotatedContext, md) + if err != nil { + runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err) + return + } + + forward_Edit_AddJsonSchema_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...) + + }) + mux.Handle("GET", pattern_Edit_SampleSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) { ctx, cancel := context.WithCancel(req.Context()) defer cancel() @@ -3408,6 +3493,28 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien }) + mux.Handle("POST", pattern_Edit_AddJsonSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) { + ctx, cancel := context.WithCancel(req.Context()) + defer cancel() + inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req) + var err error + var annotatedContext context.Context + annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddJsonSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/jsonschema")) + if err != nil { + runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err) + return + } + resp, md, err := request_Edit_AddJsonSchema_0(annotatedContext, inboundMarshaler, client, req, pathParams) + annotatedContext = runtime.NewServerMetadataContext(annotatedContext, md) + if err != nil { + runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err) + return + } + + forward_Edit_AddJsonSchema_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...) + + }) + mux.Handle("GET", pattern_Edit_SampleSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) { ctx, cancel := context.WithCancel(req.Context()) defer cancel() @@ -3480,6 +3587,8 @@ var ( pattern_Edit_AddSchema_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "schema"}, "")) + pattern_Edit_AddJsonSchema_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "jsonschema"}, "")) + pattern_Edit_SampleSchema_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "schema-sample"}, "")) pattern_Edit_AddMapping_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "mapping"}, "")) @@ -3510,6 +3619,8 @@ var ( forward_Edit_AddSchema_0 = runtime.ForwardResponseMessage + forward_Edit_AddJsonSchema_0 = runtime.ForwardResponseMessage + forward_Edit_SampleSchema_0 = runtime.ForwardResponseMessage forward_Edit_AddMapping_0 = runtime.ForwardResponseMessage diff --git a/gripql/gripql.proto b/gripql/gripql.proto index 24bb3d46..320e673d 100644 --- a/gripql/gripql.proto +++ b/gripql/gripql.proto @@ -503,13 +503,20 @@ service Edit { }; } - rpc SampleSchema(GraphID) returns (Graph) { + rpc AddJsonSchema(RawJson) returns (EditResult) { + option (google.api.http) = { + post: "/v1/graph/{graph}/jsonschema" + body: "*" + }; + } + + rpc SampleSchema(GraphID) returns (Graph) { option (google.api.http) = { get: "/v1/graph/{graph}/schema-sample" }; } - rpc AddMapping(Graph) returns (EditResult) { + rpc AddMapping(Graph) returns (EditResult) { option (google.api.http) = { post: "/v1/graph/{graph}/mapping" body: "*" diff --git a/gripql/gripql_grpc.pb.go b/gripql/gripql_grpc.pb.go index edad35cd..03cccf30 100644 --- a/gripql/gripql_grpc.pb.go +++ b/gripql/gripql_grpc.pb.go @@ -935,20 +935,21 @@ var Job_ServiceDesc = grpc.ServiceDesc{ } const ( - Edit_AddVertex_FullMethodName = "/gripql.Edit/AddVertex" - Edit_AddEdge_FullMethodName = "/gripql.Edit/AddEdge" - Edit_BulkAdd_FullMethodName = "/gripql.Edit/BulkAdd" - Edit_BulkAddRaw_FullMethodName = "/gripql.Edit/BulkAddRaw" - Edit_AddGraph_FullMethodName = "/gripql.Edit/AddGraph" - Edit_DeleteGraph_FullMethodName = "/gripql.Edit/DeleteGraph" - Edit_BulkDelete_FullMethodName = "/gripql.Edit/BulkDelete" - Edit_DeleteVertex_FullMethodName = "/gripql.Edit/DeleteVertex" - Edit_DeleteEdge_FullMethodName = "/gripql.Edit/DeleteEdge" - Edit_AddIndex_FullMethodName = "/gripql.Edit/AddIndex" - Edit_DeleteIndex_FullMethodName = "/gripql.Edit/DeleteIndex" - Edit_AddSchema_FullMethodName = "/gripql.Edit/AddSchema" - Edit_SampleSchema_FullMethodName = "/gripql.Edit/SampleSchema" - Edit_AddMapping_FullMethodName = "/gripql.Edit/AddMapping" + Edit_AddVertex_FullMethodName = "/gripql.Edit/AddVertex" + Edit_AddEdge_FullMethodName = "/gripql.Edit/AddEdge" + Edit_BulkAdd_FullMethodName = "/gripql.Edit/BulkAdd" + Edit_BulkAddRaw_FullMethodName = "/gripql.Edit/BulkAddRaw" + Edit_AddGraph_FullMethodName = "/gripql.Edit/AddGraph" + Edit_DeleteGraph_FullMethodName = "/gripql.Edit/DeleteGraph" + Edit_BulkDelete_FullMethodName = "/gripql.Edit/BulkDelete" + Edit_DeleteVertex_FullMethodName = "/gripql.Edit/DeleteVertex" + Edit_DeleteEdge_FullMethodName = "/gripql.Edit/DeleteEdge" + Edit_AddIndex_FullMethodName = "/gripql.Edit/AddIndex" + Edit_DeleteIndex_FullMethodName = "/gripql.Edit/DeleteIndex" + Edit_AddSchema_FullMethodName = "/gripql.Edit/AddSchema" + Edit_AddJsonSchema_FullMethodName = "/gripql.Edit/AddJsonSchema" + Edit_SampleSchema_FullMethodName = "/gripql.Edit/SampleSchema" + Edit_AddMapping_FullMethodName = "/gripql.Edit/AddMapping" ) // EditClient is the client API for Edit service. @@ -967,6 +968,7 @@ type EditClient interface { AddIndex(ctx context.Context, in *IndexID, opts ...grpc.CallOption) (*EditResult, error) DeleteIndex(ctx context.Context, in *IndexID, opts ...grpc.CallOption) (*EditResult, error) AddSchema(ctx context.Context, in *Graph, opts ...grpc.CallOption) (*EditResult, error) + AddJsonSchema(ctx context.Context, in *RawJson, opts ...grpc.CallOption) (*EditResult, error) SampleSchema(ctx context.Context, in *GraphID, opts ...grpc.CallOption) (*Graph, error) AddMapping(ctx context.Context, in *Graph, opts ...grpc.CallOption) (*EditResult, error) } @@ -1149,6 +1151,16 @@ func (c *editClient) AddSchema(ctx context.Context, in *Graph, opts ...grpc.Call return out, nil } +func (c *editClient) AddJsonSchema(ctx context.Context, in *RawJson, opts ...grpc.CallOption) (*EditResult, error) { + cOpts := append([]grpc.CallOption{grpc.StaticMethod()}, opts...) + out := new(EditResult) + err := c.cc.Invoke(ctx, Edit_AddJsonSchema_FullMethodName, in, out, cOpts...) + if err != nil { + return nil, err + } + return out, nil +} + func (c *editClient) SampleSchema(ctx context.Context, in *GraphID, opts ...grpc.CallOption) (*Graph, error) { cOpts := append([]grpc.CallOption{grpc.StaticMethod()}, opts...) out := new(Graph) @@ -1185,6 +1197,7 @@ type EditServer interface { AddIndex(context.Context, *IndexID) (*EditResult, error) DeleteIndex(context.Context, *IndexID) (*EditResult, error) AddSchema(context.Context, *Graph) (*EditResult, error) + AddJsonSchema(context.Context, *RawJson) (*EditResult, error) SampleSchema(context.Context, *GraphID) (*Graph, error) AddMapping(context.Context, *Graph) (*EditResult, error) mustEmbedUnimplementedEditServer() @@ -1230,6 +1243,9 @@ func (UnimplementedEditServer) DeleteIndex(context.Context, *IndexID) (*EditResu func (UnimplementedEditServer) AddSchema(context.Context, *Graph) (*EditResult, error) { return nil, status.Errorf(codes.Unimplemented, "method AddSchema not implemented") } +func (UnimplementedEditServer) AddJsonSchema(context.Context, *RawJson) (*EditResult, error) { + return nil, status.Errorf(codes.Unimplemented, "method AddJsonSchema not implemented") +} func (UnimplementedEditServer) SampleSchema(context.Context, *GraphID) (*Graph, error) { return nil, status.Errorf(codes.Unimplemented, "method SampleSchema not implemented") } @@ -1481,6 +1497,24 @@ func _Edit_AddSchema_Handler(srv interface{}, ctx context.Context, dec func(inte return interceptor(ctx, in, info, handler) } +func _Edit_AddJsonSchema_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { + in := new(RawJson) + if err := dec(in); err != nil { + return nil, err + } + if interceptor == nil { + return srv.(EditServer).AddJsonSchema(ctx, in) + } + info := &grpc.UnaryServerInfo{ + Server: srv, + FullMethod: Edit_AddJsonSchema_FullMethodName, + } + handler := func(ctx context.Context, req interface{}) (interface{}, error) { + return srv.(EditServer).AddJsonSchema(ctx, req.(*RawJson)) + } + return interceptor(ctx, in, info, handler) +} + func _Edit_SampleSchema_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) { in := new(GraphID) if err := dec(in); err != nil { @@ -1564,6 +1598,10 @@ var Edit_ServiceDesc = grpc.ServiceDesc{ MethodName: "AddSchema", Handler: _Edit_AddSchema_Handler, }, + { + MethodName: "AddJsonSchema", + Handler: _Edit_AddJsonSchema_Handler, + }, { MethodName: "SampleSchema", Handler: _Edit_SampleSchema_Handler, diff --git a/gripql/python/gripql/graph.py b/gripql/python/gripql/graph.py index 2b64d02b..537ed977 100644 --- a/gripql/python/gripql/graph.py +++ b/gripql/python/gripql/graph.py @@ -8,11 +8,26 @@ class Graph(BaseConnection): - def __init__(self, url, graph, user=None, password=None, token=None, credential_file=None): + def __init__(self, url, graph, project_id=None, user=None, password=None, token=None, credential_file=None): super(Graph, self).__init__(url, user, password, token, credential_file) self.url = self.base_url + "/v1/graph/" + graph self.graph = graph + def addJsonSchema(self, fhirjson): + """ + Add a Json Schema for a graph + """ + payload = { + "graph": self.graph, + "data":fhirjson, + } + response = self.session.post( + self.url + "/jsonschema", + json=payload + ) + raise_for_status(response) + return response.json() + def addSchema(self, vertices=[], edges=[]): """ Add the schema for a graph. @@ -147,6 +162,9 @@ def delete(self, vertices=[], edges=[]): def bulkAdd(self): return BulkAdd(self.base_url, self.graph, self.user, self.password, self.token) + def bulkAddRaw(self): + return BulkAddRaw(self.base_url, self.graph, self.user, self.password, self.token) + def addIndex(self, label, field): url = self.url + "/index/" + label response = self.session.post( @@ -300,3 +318,30 @@ def execute(self): ) raise_for_status(response) return response.json() + + +class BulkAddRaw(BaseConnection): + def __init__(self, url, graph, project_id=None, user=None, password=None, token=None, credential_file=None): + super(BulkAddRaw, self).__init__(url, user, password, token, credential_file) + self.url = self.base_url + "/v1/rawJson" + self.graph = graph + self.project_id = "test-data" + self.elements = [] + + def addJson(self, data={}): + payload = { + "graph": self.graph, + "project_id": self.project_id, + "data": data + } + self.elements.append(json.dumps(payload)) + + + def execute(self): + payload = "\n".join(self.elements) + response = self.session.post( + self.url, + data=payload + ) + raise_for_status(response) + return response.json() diff --git a/schema/graph.go b/schema/graph.go index 770da5af..844a0219 100644 --- a/schema/graph.go +++ b/schema/graph.go @@ -85,7 +85,7 @@ func ParseSchema(schema *jsonschema.Schema) any { return nil } -func ParseSchemaGraphs(relpath string, graphName string) ([]*gripql.Graph, error) { +func ParseIntoGraphqlSchema(relpath string, graphName string) ([]*gripql.Graph, error) { out, err := graph.Load(relpath) if err != nil { log.Info("AN ERROR HAS OCCURED: ", err) @@ -282,11 +282,22 @@ func parseGraphFile(relpath string, format string, graphName string) ([]*gripql. case "json": graphs, err = ParseJSONGraphs(source) case "jsonSchema": - graphs, err = ParseSchemaGraphs(path, graphName) + graphs, err = ParseIntoGraphqlSchema(path, graphName) case "yamlSchema": - graphs, err = ParseSchemaGraphs(relpath, graphName) + graphs, err = ParseIntoGraphqlSchema(relpath, graphName) case "jSchema": - graphs, err = ParseJSchema(path, graphName) + file, err := os.Open(path) + if err != nil { + return nil, fmt.Errorf("failed to open file: %v", err) + } + defer file.Close() + + // Read the entire file content + bytes, err := ioutil.ReadAll(file) + if err != nil { + return nil, fmt.Errorf("failed to read file: %v", err) + } + graphs, err = ParseJSchema(bytes, graphName) default: err = fmt.Errorf("unknown file format: %s", format) } @@ -296,23 +307,12 @@ func parseGraphFile(relpath string, format string, graphName string) ([]*gripql. return graphs, nil } -func ParseJSchema(path string, graphName string) ([]*gripql.Graph, error) { +func ParseJSchema(bytes []byte, graphName string) ([]*gripql.Graph, error) { graphSchema := map[string]any{ "vertices": []map[string]any{}, "edges": []map[string]any{}, "graph": graphName, } - file, err := os.Open(path) - if err != nil { - return nil, fmt.Errorf("failed to open file: %v", err) - } - defer file.Close() - - // Read the entire file content - bytes, err := ioutil.ReadAll(file) - if err != nil { - return nil, fmt.Errorf("failed to read file: %v", err) - } // Parse JSON into a map var data map[string]any diff --git a/server/api.go b/server/api.go index 506b0dcc..b336e2ee 100644 --- a/server/api.go +++ b/server/api.go @@ -10,12 +10,14 @@ import ( "github.com/bmeg/grip/gripper" "github.com/bmeg/grip/gripql" "github.com/bmeg/grip/log" + "github.com/bmeg/grip/schema" "github.com/bmeg/grip/util" "github.com/bmeg/jsonschema/v5" "github.com/bmeg/jsonschemagraph/graph" "golang.org/x/net/context" "google.golang.org/grpc/codes" "google.golang.org/grpc/status" + "google.golang.org/protobuf/encoding/protojson" ) // Traversal parses a traversal request and streams the results back @@ -277,6 +279,7 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error resourceType, ok := classData["resourceType"].(string) if !ok { log.WithFields(log.Fields{"error": fmt.Errorf("row %s does not have required field resourceType", classData)}).Error("BulkAddRaw: streaming error") + errorCount++ continue } @@ -311,6 +314,7 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error Graph: element.Graph, } } + insertCount++ } } @@ -383,7 +387,7 @@ func (server *GripServer) BulkAdd(stream gripql.Edit_BulkAddServer) error { err := element.Vertex.Validate() if err != nil { errorCount++ - log.WithFields(log.Fields{"graph": element.Graph, "error": err}).Errorf("BulkAdd: vertex validation failed") + log.WithFields(log.Fields{"graph": element.Graph, "error": err}).Errorf("BulkAdd: vertex validation failed for vertex: %#v", element.Vertex) } else { insertCount++ elementStream <- gdbi.NewGraphElement(element) @@ -397,7 +401,7 @@ func (server *GripServer) BulkAdd(stream gripql.Edit_BulkAddServer) error { err := element.Edge.Validate() if err != nil { errorCount++ - log.WithFields(log.Fields{"graph": element.Graph, "error": err}).Errorf("BulkAdd: edge validation failed") + log.WithFields(log.Fields{"graph": element.Graph, "error": err}).Errorf("BulkAdd: edge validation failed for edge: %#v", element.Edge) } else { insertCount++ elementStream <- gdbi.NewGraphElement(element) @@ -594,6 +598,22 @@ func (server *GripServer) AddSchema(ctx context.Context, req *gripql.Graph) (*gr return &gripql.EditResult{Id: req.Graph}, nil } +// AddJsonSchema adds a jsonschema to grip as a graph +func (server *GripServer) AddJsonSchema(ctx context.Context, rawjson *gripql.RawJson) (*gripql.EditResult, error) { + bytes, err := protojson.Marshal(rawjson.Data) + if err != nil { + fmt.Printf("Failed to marshal data to bytes: %v\n", err) + return nil, err + } + req, err := schema.ParseJSchema(bytes, rawjson.Graph) + if err != nil { + fmt.Errorf("Failed to parse schema data: %v\n", err) + return nil, err + } + res, err := server.AddSchema(ctx, req[0]) + return res, err +} + // GetMapping returns the schema of a specific graph in the database func (server *GripServer) GetMapping(ctx context.Context, elem *gripql.GraphID) (*gripql.Graph, error) { if !server.graphExists(elem.Graph) { From f4ae5dfb608194c2cf38045ec2f376ed3172e96f Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Fri, 15 Nov 2024 08:42:36 -0800 Subject: [PATCH 10/35] trim down test data size --- conformance/graphs/condition.edges | 1252 +------------------------ conformance/graphs/condition.vertices | 607 ------------ 2 files changed, 1 insertion(+), 1858 deletions(-) diff --git a/conformance/graphs/condition.edges b/conformance/graphs/condition.edges index ad8413fe..16bd52ad 100644 --- a/conformance/graphs/condition.edges +++ b/conformance/graphs/condition.edges @@ -157,1254 +157,4 @@ {"gid":"53cb2485-2bf4-50d1-9407-516458a62cc9","label":"subject_Patient","from":"907ca09b-6273-41f2-bd57-90cad7a67164","to":"6c41377e-1b05-4402-b95d-973ee35b2c48"} {"gid":"83c39919-3fa7-5571-8f99-6c6cccc44809","label":"condition","from":"6c41377e-1b05-4402-b95d-973ee35b2c48","to":"907ca09b-6273-41f2-bd57-90cad7a67164"} {"gid":"89d2ee5d-a2a7-5ae1-82d1-a1f6e8a699b1","label":"subject_Patient","from":"6e1fb983-1183-472a-b84e-e76fa7b5bb51","to":"6c41377e-1b05-4402-b95d-973ee35b2c48"} -{"gid":"a96d6e16-e411-5c09-87c5-7421ca100584","label":"condition","from":"6c41377e-1b05-4402-b95d-973ee35b2c48","to":"6e1fb983-1183-472a-b84e-e76fa7b5bb51"} -{"gid":"c35ec3db-7677-53c7-92ee-3e07fa48e43d","label":"subject_Patient","from":"f8ceaafa-beb4-4091-9417-234274dae50e","to":"6c41377e-1b05-4402-b95d-973ee35b2c48"} -{"gid":"2f8f4713-92f0-55c5-9614-7fab020f7dd9","label":"condition","from":"6c41377e-1b05-4402-b95d-973ee35b2c48","to":"f8ceaafa-beb4-4091-9417-234274dae50e"} -{"gid":"6089e35f-cf58-56d9-9841-c003531c29f5","label":"subject_Patient","from":"724fc620-e144-4cb1-83fb-d4d423b242fc","to":"74af22f2-a67d-4aa6-b932-30383fec846b"} -{"gid":"9e150bda-da30-530a-8470-a9b965843b6f","label":"condition","from":"74af22f2-a67d-4aa6-b932-30383fec846b","to":"724fc620-e144-4cb1-83fb-d4d423b242fc"} -{"gid":"763ba396-c013-55ec-9f19-46b894bcc6a0","label":"subject_Patient","from":"ac510c33-924b-4122-ae69-989d436d887d","to":"74af22f2-a67d-4aa6-b932-30383fec846b"} -{"gid":"d96d0a28-d10f-5cee-9fe7-c11464c34571","label":"condition","from":"74af22f2-a67d-4aa6-b932-30383fec846b","to":"ac510c33-924b-4122-ae69-989d436d887d"} 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(situation)"},"encounter":{"reference":"Encounter/ffca33b8-1265-4db8-bb47-1dc0c9a27832"},"id":"afd72eb0-fce2-43ee-b940-4d93fde72e77","links":[{"href":"Patient/967846d4-dedb-4f79-8607-391185082f20","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:58:15.433+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#OVe244bnwrrpZW2v","versionId":"1"},"onsetDateTime":"1977-06-26T00:03:56-04:00","recordedDate":"1977-06-26T00:03:56-04:00","resourceType":"Condition","subject":{"reference":"Patient/967846d4-dedb-4f79-8607-391185082f20"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} -{"gid":"0c884b5b-33ad-43cb-95cd-4745f4cad12e","label":"Condition","data":{"abatementDateTime":"1973-07-03T00:03:56-04:00","category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"resolved","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"444814009","display":"Viral sinusitis (disorder)","system":"http://snomed.info/sct"}],"text":"Viral sinusitis (disorder)"},"encounter":{"reference":"Encounter/f906d761-dac4-4325-959c-5090182a6a78"},"id":"0c884b5b-33ad-43cb-95cd-4745f4cad12e","links":[{"href":"Patient/967846d4-dedb-4f79-8607-391185082f20","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:58:15.433+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#OVe244bnwrrpZW2v","versionId":"1"},"onsetDateTime":"1973-06-19T00:03:56-04:00","recordedDate":"1973-06-19T00:03:56-04:00","resourceType":"Condition","subject":{"reference":"Patient/967846d4-dedb-4f79-8607-391185082f20"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} \ No newline at end of file From c9f36feb0c360df711172fe92c5e094ae4750a2a Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Fri, 15 Nov 2024 09:48:51 -0800 Subject: [PATCH 11/35] bug fix --- conformance/graphs/condition.edges | 3 +-- conformance/graphs/condition.vertices | 2 +- conformance/tests/ot_bulk_raw.py | 6 +++--- schema/graph.go | 2 -- server/api.go | 4 +--- server/metagraphs.go | 2 +- 6 files changed, 7 insertions(+), 12 deletions(-) diff --git a/conformance/graphs/condition.edges b/conformance/graphs/condition.edges index 16bd52ad..ce92a78c 100644 --- a/conformance/graphs/condition.edges +++ b/conformance/graphs/condition.edges @@ -156,5 +156,4 @@ {"gid":"fcd04ee5-b4ff-5010-94a8-fb0a9a57a8f0","label":"condition","from":"6c41377e-1b05-4402-b95d-973ee35b2c48","to":"3b68d186-5587-4c30-a3c7-6c1f38d8c62f"} {"gid":"53cb2485-2bf4-50d1-9407-516458a62cc9","label":"subject_Patient","from":"907ca09b-6273-41f2-bd57-90cad7a67164","to":"6c41377e-1b05-4402-b95d-973ee35b2c48"} {"gid":"83c39919-3fa7-5571-8f99-6c6cccc44809","label":"condition","from":"6c41377e-1b05-4402-b95d-973ee35b2c48","to":"907ca09b-6273-41f2-bd57-90cad7a67164"} -{"gid":"89d2ee5d-a2a7-5ae1-82d1-a1f6e8a699b1","label":"subject_Patient","from":"6e1fb983-1183-472a-b84e-e76fa7b5bb51","to":"6c41377e-1b05-4402-b95d-973ee35b2c48"} - +{"gid":"89d2ee5d-a2a7-5ae1-82d1-a1f6e8a699b1","label":"subject_Patient","from":"6e1fb983-1183-472a-b84e-e76fa7b5bb51","to":"6c41377e-1b05-4402-b95d-973ee35b2c48"} \ No newline at end of file diff --git a/conformance/graphs/condition.vertices b/conformance/graphs/condition.vertices index 1f5bb937..047c6750 100644 --- a/conformance/graphs/condition.vertices +++ b/conformance/graphs/condition.vertices @@ -95,4 +95,4 @@ {"gid":"094a1dd5-f0d1-41de-9728-a13636b7094b","label":"Condition","data":{"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"429007001","display":"History of cardiac arrest (situation)","system":"http://snomed.info/sct"}],"text":"History of cardiac arrest (situation)"},"encounter":{"reference":"Encounter/00cefe5b-d663-4fdd-a87e-d872280a6fd3"},"id":"094a1dd5-f0d1-41de-9728-a13636b7094b","links":[{"href":"Patient/74af22f2-a67d-4aa6-b932-30383fec846b","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:31:45.031+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#l9MRe2cRjfS7IVVt","versionId":"1"},"onsetDateTime":"1970-04-23T15:08:23-05:00","recordedDate":"1970-04-23T15:08:23-05:00","resourceType":"Condition","subject":{"reference":"Patient/74af22f2-a67d-4aa6-b932-30383fec846b"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} {"gid":"16c892a0-a26b-437b-bc98-ee4a5fea7418","label":"Condition","data":{"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"410429000","display":"Cardiac Arrest","system":"http://snomed.info/sct"}],"text":"Cardiac Arrest"},"encounter":{"reference":"Encounter/00cefe5b-d663-4fdd-a87e-d872280a6fd3"},"id":"16c892a0-a26b-437b-bc98-ee4a5fea7418","links":[{"href":"Patient/74af22f2-a67d-4aa6-b932-30383fec846b","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:31:45.031+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#l9MRe2cRjfS7IVVt","versionId":"1"},"onsetDateTime":"1970-04-23T15:08:23-05:00","recordedDate":"1970-04-23T15:08:23-05:00","resourceType":"Condition","subject":{"reference":"Patient/74af22f2-a67d-4aa6-b932-30383fec846b"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} {"gid":"5614fedb-fdfa-4c25-aa98-8a168514648e","label":"Condition","data":{"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"15777000","display":"Prediabetes","system":"http://snomed.info/sct"}],"text":"Prediabetes"},"encounter":{"reference":"Encounter/acee6c4e-7012-4036-a302-80ada54bc461"},"id":"5614fedb-fdfa-4c25-aa98-8a168514648e","links":[{"href":"Patient/498fa911-aa03-4ed6-aaad-61ee425fc4df","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:12:57.737+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#ms6aDKdk8anUbTfb","versionId":"1"},"onsetDateTime":"1946-06-21T05:49:58-04:00","recordedDate":"1946-06-21T05:49:58-04:00","resourceType":"Condition","subject":{"reference":"Patient/498fa911-aa03-4ed6-aaad-61ee425fc4df"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} -{"gid":"bd822ec9-e469-4913-8e4f-380a3d3cf659","label":"Condition","data":{"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"271737000","display":"Anemia (disorder)","system":"http://snomed.info/sct"}],"text":"Anemia (disorder)"},"encounter":{"reference":"Encounter/acee6c4e-7012-4036-a302-80ada54bc461"},"id":"bd822ec9-e469-4913-8e4f-380a3d3cf659","links":[{"href":"Patient/498fa911-aa03-4ed6-aaad-61ee425fc4df","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:12:57.737+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#ms6aDKdk8anUbTfb","versionId":"1"},"onsetDateTime":"1946-06-21T05:49:58-04:00","recordedDate":"1946-06-21T05:49:58-04:00","resourceType":"Condition","subject":{"reference":"Patient/498fa911-aa03-4ed6-aaad-61ee425fc4df"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} +{"gid":"bd822ec9-e469-4913-8e4f-380a3d3cf659","label":"Condition","data":{"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"271737000","display":"Anemia (disorder)","system":"http://snomed.info/sct"}],"text":"Anemia (disorder)"},"encounter":{"reference":"Encounter/acee6c4e-7012-4036-a302-80ada54bc461"},"id":"bd822ec9-e469-4913-8e4f-380a3d3cf659","links":[{"href":"Patient/498fa911-aa03-4ed6-aaad-61ee425fc4df","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:12:57.737+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#ms6aDKdk8anUbTfb","versionId":"1"},"onsetDateTime":"1946-06-21T05:49:58-04:00","recordedDate":"1946-06-21T05:49:58-04:00","resourceType":"Condition","subject":{"reference":"Patient/498fa911-aa03-4ed6-aaad-61ee425fc4df"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} \ No newline at end of file diff --git a/conformance/tests/ot_bulk_raw.py b/conformance/tests/ot_bulk_raw.py index 5d9f149d..cb204a67 100644 --- a/conformance/tests/ot_bulk_raw.py +++ b/conformance/tests/ot_bulk_raw.py @@ -4,7 +4,7 @@ def test_bulk_add_raw(man): errors = [] - G = man.setGraph("condition") + G = man.setGraph('condition') # Probably don't want to add a 2MB schema file to the repo so get it via requests instead res = requests.get("https://raw.githubusercontent.com/bmeg/iceberg/f1724941fe47df24846135fb515d1b89e791cee3/schemas/graph/graph-fhir.json") @@ -27,7 +27,7 @@ def test_bulk_add_raw(man): errors.append(f"bulkraw inserted edge with id 838e42fb-a65d-4039-9f83-59c37b1ae889 not found") labels = G.listLabels() - if labels != {'vertexLabels': ['Condition', 'http://graph-fhir.io/schema/0.0.2/Condition', 'http://graph-fhir.io/schema/0.0.2/Patient'], 'edgeLabels': ['condition', 'subject_Patient']}: - errors.append(f"After insert operations {labels} != expected {{'vertexLabels': ['Condition', 'http://graph-fhir.io/schema/0.0.2/Condition', 'http://graph-fhir.io/schema/0.0.2/Patient'], 'edgeLabels': ['condition', 'subject_Patient']}}") + if labels != {'vertexLabels': ['Condition', 'Patient'], 'edgeLabels': ['condition', 'subject_Patient']}: + errors.append(f"After insert operations {labels} != expected {{'vertexLabels': ['Condition', 'Patient'], 'edgeLabels': ['condition', 'subject_Patient']}}") return errors diff --git a/schema/graph.go b/schema/graph.go index 844a0219..1ecfccef 100644 --- a/schema/graph.go +++ b/schema/graph.go @@ -325,8 +325,6 @@ func ParseJSchema(bytes []byte, graphName string) ([]*gripql.Graph, error) { delete(vals, "$id") vals["id"] = idVal } - // Store the type level schema id in each schema vertex so that it can be used later when generating edges - vals["schema_id"] = data["$id"] vertex := map[string]any{"data": values, "label": key, "gid": data["$id"].(string) + "/" + key} graphSchema["vertices"] = append(graphSchema["vertices"].([]map[string]any), vertex) diff --git a/server/api.go b/server/api.go index b336e2ee..4dbc4351 100644 --- a/server/api.go +++ b/server/api.go @@ -283,9 +283,7 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error continue } - // It might be better to hardcode this --> "http://graph-fhir.io/schema/0.0.2/" - schema_id := sch.GetVertices()[0].GetDataMap()["schema_id"].(string) - result, err := out.Generate(schema_id+"/"+resourceType, classData, false, class.ProjectId) + result, err := out.Generate(resourceType, classData, false, class.ProjectId) if err != nil { log.WithFields(log.Fields{"error": err}).Error("BulkAddRaw: streaming error") errorCount++ diff --git a/server/metagraphs.go b/server/metagraphs.go index 3f073a62..50cf2d35 100644 --- a/server/metagraphs.go +++ b/server/metagraphs.go @@ -188,7 +188,7 @@ func (server *GripServer) LoadSchemas(project_id string, sch *gripql.Graph, out log.Error("schcompiler.Compile err: ", err) return nil, err } - out.Classes[v.Gid] = sch + out.Classes[v.Label] = sch } out.Compiler = schcompiler From 694ef9dec95c29598bd7017a24fa5c01e2b88733 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Fri, 15 Nov 2024 11:06:12 -0800 Subject: [PATCH 12/35] bug fix --- accounts/bulk_write_filter.go | 44 +++++++++++++++++++++++++++++++++++ accounts/util.go | 2 +- server/api.go | 8 +++---- 3 files changed, 49 insertions(+), 5 deletions(-) diff --git a/accounts/bulk_write_filter.go b/accounts/bulk_write_filter.go index dafa875c..5f7c704b 100644 --- a/accounts/bulk_write_filter.go +++ b/accounts/bulk_write_filter.go @@ -52,3 +52,47 @@ func (bw *BulkWriteFilter) RecvMsg(m interface{}) error { } } } + +type BulkWriteRawFilter struct { + SS grpc.ServerStream + User string + Access Access +} + +func (bw *BulkWriteRawFilter) SetHeader(m metadata.MD) error { + return bw.SS.SendHeader(m) +} + +func (bw *BulkWriteRawFilter) SendHeader(m metadata.MD) error { + return bw.SS.SendHeader(m) +} + +func (bw *BulkWriteRawFilter) SetTrailer(m metadata.MD) { + bw.SS.SetTrailer(m) +} + +func (bw *BulkWriteRawFilter) Context() context.Context { + return bw.SS.Context() +} + +func (bw *BulkWriteRawFilter) SendMsg(m interface{}) error { + return bw.SS.SendMsg(m) +} + +func (bw *BulkWriteRawFilter) RecvMsg(m interface{}) error { + for { + var ge gripql.RawJson + err := bw.SS.RecvMsg(&ge) + if err != nil { + return err + } + err = bw.Access.Enforce(bw.User, ge.Graph, Write) + if err == nil { + mPtr := m.(*gripql.RawJson) + *mPtr = ge + return nil + } else { + log.Infof("Graph write error: %s", ge.Graph) + } + } +} diff --git a/accounts/util.go b/accounts/util.go index ce071f6c..bcefce88 100644 --- a/accounts/util.go +++ b/accounts/util.go @@ -145,7 +145,7 @@ func streamAuthInterceptor(auth Authenticate, access Access) grpc.StreamServerIn return handler(srv, &BulkWriteFilter{ss, user, access}) } else if info.FullMethod == "/gripql.Edit/BulkAddRaw" { // Not sure if need to write custom filter for this, but existing BulkWriteFilter does not work - return handler(srv, ss) + return handler(srv, &BulkWriteRawFilter{ss, user, access}) } else { log.Errorf("Unknown input streaming op %#v!!!", info) return handler(srv, ss) diff --git a/server/api.go b/server/api.go index 4dbc4351..b6a864bc 100644 --- a/server/api.go +++ b/server/api.go @@ -293,23 +293,23 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error for _, element := range result { if element.Vertex != nil { elementStream <- &gdbi.GraphElement{ - Vertex: &gdbi.DataElement{ + Vertex: &gdbi.Vertex{ ID: element.Vertex.Gid, Data: element.Vertex.Data.AsMap(), Label: element.Vertex.Label, }, - Graph: element.Graph, + Graph: class.Graph, } } else { elementStream <- &gdbi.GraphElement{ - Edge: &gdbi.DataElement{ + Edge: &gdbi.Edge{ ID: element.Edge.Gid, Label: element.Edge.Label, From: element.Edge.From, To: element.Edge.To, Data: element.Edge.Data.AsMap(), }, - Graph: element.Graph, + Graph: class.Graph, } } insertCount++ From f11f79ea1333256fde7d3b82455853a4606c7c34 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Fri, 15 Nov 2024 11:53:26 -0800 Subject: [PATCH 13/35] cleanup --- conformance/graphs/condition.edges | 159 -------------------------- conformance/graphs/condition.vertices | 98 ---------------- conformance/tests/ot_bulk_raw.py | 4 +- gripql/python/gripql/connection.py | 14 +++ 4 files changed, 16 insertions(+), 259 deletions(-) delete mode 100644 conformance/graphs/condition.edges delete mode 100644 conformance/graphs/condition.vertices diff --git a/conformance/graphs/condition.edges b/conformance/graphs/condition.edges deleted file mode 100644 index ce92a78c..00000000 --- a/conformance/graphs/condition.edges +++ /dev/null @@ -1,159 +0,0 @@ -{"gid":"0b12af4a-a30b-5082-ac6e-3d2b8c38f63e","label":"subject_Patient","from":"838e42fb-a65d-4039-9f83-59c37b1ae889","to":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d"} -{"gid":"22d7bdcc-bc35-5232-b1c7-ba99eaa60a82","label":"condition","from":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d","to":"838e42fb-a65d-4039-9f83-59c37b1ae889"} -{"gid":"088eeff8-cc5c-5a31-ad1a-d41e4b2cda89","label":"subject_Patient","from":"9be917be-2127-465f-9be4-92eb2a37c347","to":"45c11dad-2b38-4c8e-822e-7abff8a1ee1d"} 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-{"gid":"bd822ec9-e469-4913-8e4f-380a3d3cf659","label":"Condition","data":{"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"271737000","display":"Anemia (disorder)","system":"http://snomed.info/sct"}],"text":"Anemia (disorder)"},"encounter":{"reference":"Encounter/acee6c4e-7012-4036-a302-80ada54bc461"},"id":"bd822ec9-e469-4913-8e4f-380a3d3cf659","links":[{"href":"Patient/498fa911-aa03-4ed6-aaad-61ee425fc4df","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:12:57.737+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#ms6aDKdk8anUbTfb","versionId":"1"},"onsetDateTime":"1946-06-21T05:49:58-04:00","recordedDate":"1946-06-21T05:49:58-04:00","resourceType":"Condition","subject":{"reference":"Patient/498fa911-aa03-4ed6-aaad-61ee425fc4df"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}} \ No newline at end of file diff --git a/conformance/tests/ot_bulk_raw.py b/conformance/tests/ot_bulk_raw.py index cb204a67..94711fa3 100644 --- a/conformance/tests/ot_bulk_raw.py +++ b/conformance/tests/ot_bulk_raw.py @@ -4,7 +4,7 @@ def test_bulk_add_raw(man): errors = [] - G = man.setGraph('condition') + G = man.writeTest() # Probably don't want to add a 2MB schema file to the repo so get it via requests instead res = requests.get("https://raw.githubusercontent.com/bmeg/iceberg/f1724941fe47df24846135fb515d1b89e791cee3/schemas/graph/graph-fhir.json") @@ -27,7 +27,7 @@ def test_bulk_add_raw(man): errors.append(f"bulkraw inserted edge with id 838e42fb-a65d-4039-9f83-59c37b1ae889 not found") labels = G.listLabels() - if labels != {'vertexLabels': ['Condition', 'Patient'], 'edgeLabels': ['condition', 'subject_Patient']}: + if not all(item in labels['vertexLabels'] for item in ['Condition', 'Patient']) or not all (item in labels['edgeLabels'] for item in ['condition', 'subject_Patient']): errors.append(f"After insert operations {labels} != expected {{'vertexLabels': ['Condition', 'Patient'], 'edgeLabels': ['condition', 'subject_Patient']}}") return errors diff --git a/gripql/python/gripql/connection.py b/gripql/python/gripql/connection.py index 6d7bb40d..4c4ed2f7 100644 --- a/gripql/python/gripql/connection.py +++ b/gripql/python/gripql/connection.py @@ -41,6 +41,20 @@ def deleteGraph(self, name): ) raise_for_status(response) return response.json() + def addJsonSchema(self, fhirjson): + """ + Add a Json Schema for a graph + """ + payload = { + "graph": self.graph, + "data":fhirjson, + } + response = self.session.post( + self.url + "/jsonschema", + json=payload + ) + raise_for_status(response) + return response.json() def getSchema(self, name): """ From 0e7ce90b8bc1cb36fee5ca943bed745664aa3036 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Fri, 15 Nov 2024 11:59:46 -0800 Subject: [PATCH 14/35] fix schema dataset --- conformance/tests/ot_schema.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/conformance/tests/ot_schema.py b/conformance/tests/ot_schema.py index e438305d..ebeaccc9 100644 --- a/conformance/tests/ot_schema.py +++ b/conformance/tests/ot_schema.py @@ -32,7 +32,7 @@ def test_getscheama(man): def test_post_json_schema(man): errors = [] - G = man.setGraph("condition") + G = man.setGraph("swapi") # Probably don't want to add a 2MB schema file to the repo so get it via requests instead res = requests.get("https://raw.githubusercontent.com/bmeg/iceberg/f1724941fe47df24846135fb515d1b89e791cee3/schemas/graph/graph-fhir.json") res.raise_for_status() From 7351ace7290f2c1153a86d640c11ea298d8b8c9b Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Fri, 15 Nov 2024 15:02:11 -0800 Subject: [PATCH 15/35] fix logs --- accounts/util.go | 1 - server/api.go | 4 ++-- 2 files changed, 2 insertions(+), 3 deletions(-) diff --git a/accounts/util.go b/accounts/util.go index bcefce88..c70a5afd 100644 --- a/accounts/util.go +++ b/accounts/util.go @@ -144,7 +144,6 @@ func streamAuthInterceptor(auth Authenticate, access Access) grpc.StreamServerIn } else if info.FullMethod == "/gripql.Edit/BulkDelete" { return handler(srv, &BulkWriteFilter{ss, user, access}) } else if info.FullMethod == "/gripql.Edit/BulkAddRaw" { - // Not sure if need to write custom filter for this, but existing BulkWriteFilter does not work return handler(srv, &BulkWriteRawFilter{ss, user, access}) } else { log.Errorf("Unknown input streaming op %#v!!!", info) diff --git a/server/api.go b/server/api.go index b6a864bc..ca4c26a4 100644 --- a/server/api.go +++ b/server/api.go @@ -285,9 +285,9 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error result, err := out.Generate(resourceType, classData, false, class.ProjectId) if err != nil { - log.WithFields(log.Fields{"error": err}).Error("BulkAddRaw: streaming error") + log.WithFields(log.Fields{"error": err}).Errorf("BulkAddRaw: validation error for %s: %s", resourceType, classData) errorCount++ - break + continue } for _, element := range result { From 14f0a583ac4a6ab09d29240a6c329fddde131ef2 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Mon, 18 Nov 2024 09:17:35 -0800 Subject: [PATCH 16/35] Bug fix auth test --- gripql/python/gripql/graph.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gripql/python/gripql/graph.py b/gripql/python/gripql/graph.py index 537ed977..7cd630ed 100644 --- a/gripql/python/gripql/graph.py +++ b/gripql/python/gripql/graph.py @@ -8,7 +8,7 @@ class Graph(BaseConnection): - def __init__(self, url, graph, project_id=None, user=None, password=None, token=None, credential_file=None): + def __init__(self, url, graph, user=None, password=None, token=None, credential_file=None): super(Graph, self).__init__(url, user, password, token, credential_file) self.url = self.base_url + "/v1/graph/" + graph self.graph = graph From bb2b9dd10ce40f7cf41e0456adc03a0f25d37e63 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Mon, 18 Nov 2024 14:00:32 -0800 Subject: [PATCH 17/35] Adds more tests --- conformance/tests/ot_bulk_raw.py | 36 ++++++++++++++++++++++++++++++++ server/api.go | 2 ++ 2 files changed, 38 insertions(+) diff --git a/conformance/tests/ot_bulk_raw.py b/conformance/tests/ot_bulk_raw.py index 94711fa3..ecff52b0 100644 --- a/conformance/tests/ot_bulk_raw.py +++ b/conformance/tests/ot_bulk_raw.py @@ -31,3 +31,39 @@ def test_bulk_add_raw(man): errors.append(f"After insert operations {labels} != expected {{'vertexLabels': ['Condition', 'Patient'], 'edgeLabels': ['condition', 'subject_Patient']}}") return errors + + + +def test_bulk_add_raw_validation_error(man): + errors = [] + G = man.writeTest() + + # Probably don't want to add a 2MB schema file to the repo so get it via requests instead + res = requests.get("https://raw.githubusercontent.com/bmeg/iceberg/f1724941fe47df24846135fb515d1b89e791cee3/schemas/graph/graph-fhir.json") + res.raise_for_status() + s = G.addJsonSchema(res.json()) + + bulkRaw = G.bulkAddRaw() + # fhir data from https://github.com/bmeg/iceberg-schema-tools/tree/main/tests/fixtures/simplify-fhir-hypermedia + bulkRaw.addJson(data={"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"230690007","display":"Stroke","system":"http://snomed.info/sct"}],"text":"Stroke"},"encounter":{"reference":"Encounter/f78a1442-683a-4ea2-adca-161902be19cb"},"id":"838e42fb-a65d-4039-9f83-59c37b1ae889","links":[{"href":"Patient/45c11dad-2b38-4c8e-822e-7abff8a1ee1d","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:21:56.658+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#DmW9sueQ4yuQdyA9","versionId":"1"},"onsetDateTime":"2013-08-24T15:40:53-04:00","recordedDate":"2013-08-24T15:40:53-04:00","resourceType":"Condition","subject":{"reference":"Patient/45c11dad-2b38-4c8e-822e-7abff8a1ee1d"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}) + bulkRaw.addJson(data={"resourceType":"Patient","id":"041095c0-41b7-4cad-be5d-5942f5e72331","meta":{"versionId":"1","lastUpdated":"2023-01-26T15:09:27.533+00:00","source":"#2bs0ExNirFINpsaq","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient"]},"text":{"status":"generated","div":"
Generated by Synthea.Version identifier: v2.6.1-174-g66c40fa7\n . Person seed: -5631757156564495430 Population seed: 1626964256551
"},"extension":[{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-race","extension":[{"url":"ombCategory","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2106-3","display":"White"}},{"url":"text","valueString":"White"}]},{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity","extension":[{"url":"ombCategory","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2186-5","display":"Non Hispanic or Latino"}},{"url":"text","valueString":"Non Hispanic or Latino"}]},{"url":"http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName","valueString":"Johnie961 Howe413"},{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex","valueCode":"M"},{"url":"http://hl7.org/fhir/StructureDefinition/patient-birthPlace","valueAddress":{"city":"Leominster","state":"Massachusetts","country":"US"}},{"url":"http://synthetichealth.github.io/synthea/disability-adjusted-life-years","valueDecimal":11.356925230821238},{"url":"http://synthetichealth.github.io/synthea/quality-adjusted-life-years","valueDecimal":84.64307476917877}],"ider":[{"system":"https://github.com/synthetichealth/synthea","value":"98a6c929-b2cb-9719-ba06-ae2d693d1964"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"MR","display":"Medical Record Number"}],"text":"Medical Record Number"},"system":"http://hospital.smarthealthit.org","value":"98a6c929-b2cb-9719-ba06-ae2d693d1964"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"SS","display":"Social Security Number"}],"text":"Social Security Number"},"system":"http://hl7.org/fhir/sid/us-ssn","value":"999-54-8135"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"DL","display":"Driver's License"}],"text":"Driver's License"},"system":"urn:oid:2.16.840.1.113883.4.3.25","value":"S99944955"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"PPN","display":"Passport Number"}],"text":"Passport Number"},"system":"http://standardhealthrecord.org/fhir/StructureDefinition/passportNumber","value":"X88746034X"}],"name":[{"use":"official","family":"Schiller186","given":["Stewart672"],"prefix":["Mr."]}],"telecom":[{"system":"phone","value":"555-164-3643","use":"home"}],"gender":"male","birthDate":"1924-09-05","address":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/geolocation","extension":[{"url":"latitude","valueDecimal":42.251447299625795},{"url":"longitude","valueDecimal":-71.10142275622101}]}],"line":["955 Willms Manor"],"city":"Milton","state":"MA","country":"US"}],"maritalStatus":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v3-MaritalStatus","code":"M","display":"M"}],"text":"M"},"multipleBirthBoolean":False,"communication":[{"language":{"coding":[{"system":"urn:ietf:bcp:47","code":"en-US","display":"English"}],"text":"English"}}],"links":[]}) + + err = bulkRaw.execute() + if err['insertCount'] != 3 or err['errorCount'] != 1: + errors.append(f"validation error causes -1 insertCount +1 error: {err['insertCount']} != 3 or {err['errorCount']} != 1") + + return errors + + + +def test_bulk_add_raw_no_schema(man): + errors = [] + + G = man.writeTest() + bulkRaw = G.bulkAddRaw() + bulkRaw.addJson(data={"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"230690007","display":"Stroke","system":"http://snomed.info/sct"}],"text":"Stroke"},"encounter":{"reference":"Encounter/f78a1442-683a-4ea2-adca-161902be19cb"},"id":"838e42fb-a65d-4039-9f83-59c37b1ae889","links":[{"href":"Patient/45c11dad-2b38-4c8e-822e-7abff8a1ee1d","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:21:56.658+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#DmW9sueQ4yuQdyA9","versionId":"1"},"onsetDateTime":"2013-08-24T15:40:53-04:00","recordedDate":"2013-08-24T15:40:53-04:00","resourceType":"Condition","subject":{"reference":"Patient/45c11dad-2b38-4c8e-822e-7abff8a1ee1d"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}) + err = bulkRaw.execute() + if err["errorCount"] != 1: + errors.append("No schema was provided so error count should equal 1") + + return [] diff --git a/server/api.go b/server/api.go index ca4c26a4..899fde53 100644 --- a/server/api.go +++ b/server/api.go @@ -241,11 +241,13 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error sch, err = server.getGraph(class.Graph + "__schema__") if err != nil { log.Errorf("Error loading schemas: %v", err) + errorCount++ break } out, err = server.LoadSchemas(class.ProjectId, sch, out) if err != nil { log.Errorf("Error loading schemas: %v", err) + errorCount++ break } populated = true From 821431f4728cfef97480d98bed251c39f2e9aca7 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Tue, 19 Nov 2024 14:47:22 -0800 Subject: [PATCH 18/35] Add server err message response --- cmd/caliperload/main.go | 5 +- go.mod | 1 - go.sum | 12 - gripql/client.go | 10 +- gripql/gripql.pb.dgw.go | 10 +- gripql/gripql.pb.go | 947 +++++++++++++++++++++------------------ gripql/gripql.proto | 7 +- gripql/gripql_grpc.pb.go | 10 +- server/api.go | 23 +- 9 files changed, 545 insertions(+), 480 deletions(-) diff --git a/cmd/caliperload/main.go b/cmd/caliperload/main.go index 43d2b26a..b9d1264b 100644 --- a/cmd/caliperload/main.go +++ b/cmd/caliperload/main.go @@ -48,8 +48,9 @@ var Cmd = &cobra.Command{ elemChan := make(chan *gripql.RawJson) wait := make(chan bool) go func() { - if err := conn.BulkAddRaw(elemChan); err != nil { - log.Errorf("bulk add error: %v", err) + _, err := conn.BulkAddRaw(elemChan) + if err != nil { + log.Errorf("bulk add raw error: %v", err) } wait <- false }() diff --git a/go.mod b/go.mod index dde4ba5f..8b9edddd 100644 --- a/go.mod +++ b/go.mod @@ -123,7 +123,6 @@ require ( github.com/rcrowley/go-metrics v0.0.0-20201227073835-cf1acfcdf475 // indirect github.com/rogpeppe/go-internal v1.12.0 // indirect github.com/rs/xid v1.5.0 // indirect - github.com/santhosh-tekuri/jsonschema v1.2.4 // indirect github.com/spf13/pflag v1.0.5 // indirect github.com/xdg-go/pbkdf2 v1.0.0 // indirect github.com/xdg-go/scram v1.1.2 // indirect diff --git a/go.sum b/go.sum index 9f285c4f..1f00e009 100644 --- a/go.sum +++ b/go.sum @@ -34,18 +34,8 @@ github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc h1:/0v/ZcXYjGs44InmjECr github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc/go.mod h1:hoSeuZtqe58ANXHuWpeODx4bDHGV36QXlCs1yrUvK6M= github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad h1:ICgBexeLB7iv/IQz4rsP+MimOXFZUwWSPojEypuOaQ8= github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad/go.mod h1:ft96Irkp72C7ZrUWRenG7LrF0NKMxXdRvsypo5Njhm4= -github.com/bmeg/jsonschema/v5 v5.3.4-0.20241021223433-465090062767 h1:Xxna7pNl+RSeb8Chpo/9kqnCpINE3UYazHAEHQfKPr8= -github.com/bmeg/jsonschema/v5 v5.3.4-0.20241021223433-465090062767/go.mod h1:W6ZrtycDFIco8t+VZvgCgt2mUb+o8Js25o6g+Pe/CHU= github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92 h1:Myx/j+WxfEg+P3nDaizR1hBpjKSLgvr4ydzgp1/1pAU= github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92/go.mod h1:6v27bSBKXyIDFqlKQbUSnHlekE1y6bDkgWCuVEaDPng= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241021183544-dce95050d690 h1:f7blYURrwfFXm2a5Pk8UWVgQ3Hplx6X3/5orm6vArVQ= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241021183544-dce95050d690/go.mod h1:q2uV/fFytbCs5tnoN59Ae6we8L3N2QIZWjdaxnsEKfQ= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241023220331-fc0d420f80de h1:ruds+GrDg5RyDf8b1cSBnmk4zajcvkXBeAfPzV9my0I= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241023220331-fc0d420f80de/go.mod h1:nqCeZ/A/5zbxrwO5IBF2+xLdaP1sjtaCckmdQIo6lJM= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241111211001-6d92b7fbe785 h1:x0j4hpAp66XUyKXZQpFoM3C1uKimdca8cHik4wqg9uM= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241111211001-6d92b7fbe785/go.mod h1:m8xz9oMFKu1fxV/febWizc4vE/Z/N7DUnrdmT68w7Cs= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241113174920-a424e30e36b5 h1:BMpZ8+q45BhK8SRtjrjz6QE1xUJ36YoffcLf3R2nGk8= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241113174920-a424e30e36b5/go.mod h1:k04v50661tQFKgYl6drQxWGf9q0dBmKhd6lwIk1rcCw= github.com/bmeg/jsonschemagraph v0.0.3-0.20241113190142-5e57a1561020 h1:7/dWlBDJdKYhtF31LO8zXcw/IcYsmp/MWpydk6PzuNA= github.com/bmeg/jsonschemagraph v0.0.3-0.20241113190142-5e57a1561020/go.mod h1:k04v50661tQFKgYl6drQxWGf9q0dBmKhd6lwIk1rcCw= github.com/boltdb/bolt v1.3.1 h1:JQmyP4ZBrce+ZQu0dY660FMfatumYDLun9hBCUVIkF4= @@ -355,8 +345,6 @@ github.com/rs/xid v1.5.0 h1:mKX4bl4iPYJtEIxp6CYiUuLQ/8DYMoz0PUdtGgMFRVc= github.com/rs/xid v1.5.0/go.mod h1:trrq9SKmegXys3aeAKXMUTdJsYXVwGY3RLcfgqegfbg= github.com/russross/blackfriday v1.5.2/go.mod h1:JO/DiYxRf+HjHt06OyowR9PTA263kcR/rfWxYHBV53g= github.com/russross/blackfriday/v2 v2.1.0/go.mod h1:+Rmxgy9KzJVeS9/2gXHxylqXiyQDYRxCVz55jmeOWTM= -github.com/santhosh-tekuri/jsonschema v1.2.4 h1:hNhW8e7t+H1vgY+1QeEQpveR6D4+OwKPXCfD2aieJis= -github.com/santhosh-tekuri/jsonschema v1.2.4/go.mod h1:TEAUOeZSmIxTTuHatJzrvARHiuO9LYd+cIxzgEHCQI4= github.com/santhosh-tekuri/jsonschema/v5 v5.3.1 h1:lZUw3E0/J3roVtGQ+SCrUrg3ON6NgVqpn3+iol9aGu4= github.com/santhosh-tekuri/jsonschema/v5 v5.3.1/go.mod h1:uToXkOrWAZ6/Oc07xWQrPOhJotwFIyu2bBVN41fcDUY= github.com/sclevine/agouti v3.0.0+incompatible/go.mod h1:b4WX9W9L1sfQKXeJf1mUTLZKJ48R1S7H23Ji7oFO5Bw= diff --git a/gripql/client.go b/gripql/client.go index 2d8deaf1..9124da46 100644 --- a/gripql/client.go +++ b/gripql/client.go @@ -187,19 +187,19 @@ func (client Client) BulkAdd(elemChan chan *GraphElement) error { return err } -func (client Client) BulkAddRaw(elemChan chan *RawJson) error { +func (client Client) BulkAddRaw(elemChan chan *RawJson) (error, *BulkJsonEditResult) { sc, err := client.EditC.BulkAddRaw(context.Background()) if err != nil { - return err + return err, nil } for elem := range elemChan { err := sc.Send(elem) if err != nil { - return err + return err, nil } } - _, err = sc.CloseAndRecv() - return err + res, err := sc.CloseAndRecv() + return err, res } func (client Client) BulkDelete(delete *DeleteData) error { diff --git a/gripql/gripql.pb.dgw.go b/gripql/gripql.pb.dgw.go index bbdce609..8d04c81e 100644 --- a/gripql/gripql.pb.dgw.go +++ b/gripql/gripql.pb.dgw.go @@ -881,7 +881,7 @@ func (shim *EditDirectClient) BulkAdd(ctx context.Context, opts ...grpc.CallOpti type directEditBulkAddRaw struct { ctx context.Context c chan *RawJson - out chan *BulkEditResult + out chan *BulkJsonEditResult } func (dsm *directEditBulkAddRaw) Recv() (*RawJson, error) { @@ -901,13 +901,13 @@ func (dsm *directEditBulkAddRaw) Context() context.Context { return dsm.ctx } -func (dsm *directEditBulkAddRaw) SendAndClose(o *BulkEditResult) error { +func (dsm *directEditBulkAddRaw) SendAndClose(o *BulkJsonEditResult) error { dsm.out <- o close(dsm.out) return nil } -func (dsm *directEditBulkAddRaw) CloseAndRecv() (*BulkEditResult, error) { +func (dsm *directEditBulkAddRaw) CloseAndRecv() (*BulkJsonEditResult, error) { //close(dsm.c) out := <- dsm.out return out, nil @@ -917,7 +917,7 @@ func (dsm *directEditBulkAddRaw) CloseSend() error { close(dsm.c); r func (dsm *directEditBulkAddRaw) SetTrailer(metadata.MD) {} func (dsm *directEditBulkAddRaw) SetHeader(metadata.MD) error { return nil } func (dsm *directEditBulkAddRaw) SendHeader(metadata.MD) error { return nil } -func (dsm *directEditBulkAddRaw) SendMsg(m interface{}) error { dsm.out <- m.(*BulkEditResult); return nil } +func (dsm *directEditBulkAddRaw) SendMsg(m interface{}) error { dsm.out <- m.(*BulkJsonEditResult); return nil } func (dsm *directEditBulkAddRaw) RecvMsg(m interface{}) error { t, err := dsm.Recv() @@ -936,7 +936,7 @@ func (dsm *directEditBulkAddRaw) Trailer() metadata.MD { return nil } func (shim *EditDirectClient) BulkAddRaw(ctx context.Context, opts ...grpc.CallOption) (Edit_BulkAddRawClient, error) { md, _ := metadata.FromOutgoingContext(ctx) ictx := metadata.NewIncomingContext(ctx, md) - w := &directEditBulkAddRaw{ictx, make(chan *RawJson, 100), make(chan *BulkEditResult, 3)} + w := &directEditBulkAddRaw{ictx, make(chan *RawJson, 100), make(chan *BulkJsonEditResult, 3)} if shim.streamServerInt != nil { info := grpc.StreamServerInfo{ FullMethod: "/gripql.Edit/BulkAddRaw", diff --git a/gripql/gripql.pb.go b/gripql/gripql.pb.go index c80f0c1f..84d92ddf 100644 --- a/gripql/gripql.pb.go +++ b/gripql/gripql.pb.go @@ -2597,6 +2597,61 @@ func (x *BulkEditResult) GetErrorCount() int32 { return 0 } +type BulkJsonEditResult struct { + state protoimpl.MessageState + sizeCache protoimpl.SizeCache + unknownFields protoimpl.UnknownFields + + InsertCount int32 `protobuf:"varint,1,opt,name=insert_count,json=insertCount,proto3" json:"insert_count,omitempty"` + Errors []string `protobuf:"bytes,3,rep,name=errors,proto3" json:"errors,omitempty"` +} + +func (x *BulkJsonEditResult) Reset() { + *x = BulkJsonEditResult{} + if protoimpl.UnsafeEnabled { + mi := &file_gripql_proto_msgTypes[30] + ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) + ms.StoreMessageInfo(mi) + } +} + +func (x *BulkJsonEditResult) String() string { + return protoimpl.X.MessageStringOf(x) +} + +func (*BulkJsonEditResult) ProtoMessage() {} + +func (x *BulkJsonEditResult) ProtoReflect() protoreflect.Message { + mi := &file_gripql_proto_msgTypes[30] + if protoimpl.UnsafeEnabled && x != nil { + ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) + if ms.LoadMessageInfo() == nil { + ms.StoreMessageInfo(mi) + } + return ms + } + return mi.MessageOf(x) +} + +// Deprecated: Use BulkJsonEditResult.ProtoReflect.Descriptor instead. +func (*BulkJsonEditResult) Descriptor() ([]byte, []int) { + return file_gripql_proto_rawDescGZIP(), []int{30} +} + +func (x *BulkJsonEditResult) GetInsertCount() int32 { + if x != nil { + return x.InsertCount + } + return 0 +} + +func (x *BulkJsonEditResult) GetErrors() []string { + if x != nil { + return x.Errors + } + return nil +} + type GraphElement struct { state protoimpl.MessageState sizeCache protoimpl.SizeCache @@ -2610,7 +2665,7 @@ type GraphElement struct { func (x *GraphElement) Reset() { *x = GraphElement{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[30] + mi := &file_gripql_proto_msgTypes[31] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -2623,7 +2678,7 @@ func (x *GraphElement) String() string { func (*GraphElement) ProtoMessage() {} func (x *GraphElement) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[30] + mi := &file_gripql_proto_msgTypes[31] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -2636,7 +2691,7 @@ func (x *GraphElement) ProtoReflect() protoreflect.Message { // Deprecated: Use GraphElement.ProtoReflect.Descriptor instead. func (*GraphElement) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{30} + return file_gripql_proto_rawDescGZIP(), []int{31} } func (x *GraphElement) GetGraph() string { @@ -2671,7 +2726,7 @@ type GraphID struct { func (x *GraphID) Reset() { *x = GraphID{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[31] + mi := &file_gripql_proto_msgTypes[32] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -2684,7 +2739,7 @@ func (x *GraphID) String() string { func (*GraphID) ProtoMessage() {} func (x *GraphID) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[31] + mi := &file_gripql_proto_msgTypes[32] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -2697,7 +2752,7 @@ func (x *GraphID) ProtoReflect() protoreflect.Message { // Deprecated: Use GraphID.ProtoReflect.Descriptor instead. func (*GraphID) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{31} + return file_gripql_proto_rawDescGZIP(), []int{32} } func (x *GraphID) GetGraph() string { @@ -2719,7 +2774,7 @@ type ElementID struct { func (x *ElementID) Reset() { *x = ElementID{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[32] + mi := &file_gripql_proto_msgTypes[33] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -2732,7 +2787,7 @@ func (x *ElementID) String() string { func (*ElementID) ProtoMessage() {} func (x *ElementID) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[32] + mi := &file_gripql_proto_msgTypes[33] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -2745,7 +2800,7 @@ func (x *ElementID) ProtoReflect() protoreflect.Message { // Deprecated: Use ElementID.ProtoReflect.Descriptor instead. func (*ElementID) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{32} + return file_gripql_proto_rawDescGZIP(), []int{33} } func (x *ElementID) GetGraph() string { @@ -2775,7 +2830,7 @@ type IndexID struct { func (x *IndexID) Reset() { *x = IndexID{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[33] + mi := &file_gripql_proto_msgTypes[34] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -2788,7 +2843,7 @@ func (x *IndexID) String() string { func (*IndexID) ProtoMessage() {} func (x *IndexID) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[33] + mi := &file_gripql_proto_msgTypes[34] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -2801,7 +2856,7 @@ func (x *IndexID) ProtoReflect() protoreflect.Message { // Deprecated: Use IndexID.ProtoReflect.Descriptor instead. func (*IndexID) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{33} + return file_gripql_proto_rawDescGZIP(), []int{34} } func (x *IndexID) GetGraph() string { @@ -2836,7 +2891,7 @@ type Timestamp struct { func (x *Timestamp) Reset() { *x = Timestamp{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[34] + mi := &file_gripql_proto_msgTypes[35] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -2849,7 +2904,7 @@ func (x *Timestamp) String() string { func (*Timestamp) ProtoMessage() {} func (x *Timestamp) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[34] + mi := &file_gripql_proto_msgTypes[35] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -2862,7 +2917,7 @@ func (x *Timestamp) ProtoReflect() protoreflect.Message { // Deprecated: Use Timestamp.ProtoReflect.Descriptor instead. func (*Timestamp) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{34} + return file_gripql_proto_rawDescGZIP(), []int{35} } func (x *Timestamp) GetTimestamp() string { @@ -2881,7 +2936,7 @@ type Empty struct { func (x *Empty) Reset() { *x = Empty{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[35] + mi := &file_gripql_proto_msgTypes[36] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -2894,7 +2949,7 @@ func (x *Empty) String() string { func (*Empty) ProtoMessage() {} func (x *Empty) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[35] + mi := &file_gripql_proto_msgTypes[36] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -2907,7 +2962,7 @@ func (x *Empty) ProtoReflect() protoreflect.Message { // Deprecated: Use Empty.ProtoReflect.Descriptor instead. func (*Empty) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{35} + return file_gripql_proto_rawDescGZIP(), []int{36} } type ListGraphsResponse struct { @@ -2921,7 +2976,7 @@ type ListGraphsResponse struct { func (x *ListGraphsResponse) Reset() { *x = ListGraphsResponse{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[36] + mi := &file_gripql_proto_msgTypes[37] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -2934,7 +2989,7 @@ func (x *ListGraphsResponse) String() string { func (*ListGraphsResponse) ProtoMessage() {} func (x *ListGraphsResponse) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[36] + mi := &file_gripql_proto_msgTypes[37] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -2947,7 +3002,7 @@ func (x *ListGraphsResponse) ProtoReflect() protoreflect.Message { // Deprecated: Use ListGraphsResponse.ProtoReflect.Descriptor instead. func (*ListGraphsResponse) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{36} + return file_gripql_proto_rawDescGZIP(), []int{37} } func (x *ListGraphsResponse) GetGraphs() []string { @@ -2968,7 +3023,7 @@ type ListIndicesResponse struct { func (x *ListIndicesResponse) Reset() { *x = ListIndicesResponse{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[37] + mi := &file_gripql_proto_msgTypes[38] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -2981,7 +3036,7 @@ func (x *ListIndicesResponse) String() string { func (*ListIndicesResponse) ProtoMessage() {} func (x *ListIndicesResponse) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[37] + mi := &file_gripql_proto_msgTypes[38] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -2994,7 +3049,7 @@ func (x *ListIndicesResponse) ProtoReflect() protoreflect.Message { // Deprecated: Use ListIndicesResponse.ProtoReflect.Descriptor instead. func (*ListIndicesResponse) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{37} + return file_gripql_proto_rawDescGZIP(), []int{38} } func (x *ListIndicesResponse) GetIndices() []*IndexID { @@ -3016,7 +3071,7 @@ type ListLabelsResponse struct { func (x *ListLabelsResponse) Reset() { *x = ListLabelsResponse{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[38] + mi := &file_gripql_proto_msgTypes[39] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -3029,7 +3084,7 @@ func (x *ListLabelsResponse) String() string { func (*ListLabelsResponse) ProtoMessage() {} func (x *ListLabelsResponse) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[38] + mi := &file_gripql_proto_msgTypes[39] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -3042,7 +3097,7 @@ func (x *ListLabelsResponse) ProtoReflect() protoreflect.Message { // Deprecated: Use ListLabelsResponse.ProtoReflect.Descriptor instead. func (*ListLabelsResponse) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{38} + return file_gripql_proto_rawDescGZIP(), []int{39} } func (x *ListLabelsResponse) GetVertexLabels() []string { @@ -3073,7 +3128,7 @@ type TableInfo struct { func (x *TableInfo) Reset() { *x = TableInfo{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[39] + mi := &file_gripql_proto_msgTypes[40] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -3086,7 +3141,7 @@ func (x *TableInfo) String() string { func (*TableInfo) ProtoMessage() {} func (x *TableInfo) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[39] + mi := &file_gripql_proto_msgTypes[40] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -3099,7 +3154,7 @@ func (x *TableInfo) ProtoReflect() protoreflect.Message { // Deprecated: Use TableInfo.ProtoReflect.Descriptor instead. func (*TableInfo) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{39} + return file_gripql_proto_rawDescGZIP(), []int{40} } func (x *TableInfo) GetSource() string { @@ -3143,7 +3198,7 @@ type DeleteData struct { func (x *DeleteData) Reset() { *x = DeleteData{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[40] + mi := &file_gripql_proto_msgTypes[41] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -3156,7 +3211,7 @@ func (x *DeleteData) String() string { func (*DeleteData) ProtoMessage() {} func (x *DeleteData) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[40] + mi := &file_gripql_proto_msgTypes[41] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -3169,7 +3224,7 @@ func (x *DeleteData) ProtoReflect() protoreflect.Message { // Deprecated: Use DeleteData.ProtoReflect.Descriptor instead. func (*DeleteData) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{40} + return file_gripql_proto_rawDescGZIP(), []int{41} } func (x *DeleteData) GetGraph() string { @@ -3206,7 +3261,7 @@ type RawJson struct { func (x *RawJson) Reset() { *x = RawJson{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[41] + mi := &file_gripql_proto_msgTypes[42] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -3219,7 +3274,7 @@ func (x *RawJson) String() string { func (*RawJson) ProtoMessage() {} func (x *RawJson) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[41] + mi := &file_gripql_proto_msgTypes[42] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -3232,7 +3287,7 @@ func (x *RawJson) ProtoReflect() protoreflect.Message { // Deprecated: Use RawJson.ProtoReflect.Descriptor instead. func (*RawJson) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{41} + return file_gripql_proto_rawDescGZIP(), []int{42} } func (x *RawJson) GetGraph() string { @@ -3269,7 +3324,7 @@ type PluginConfig struct { func (x *PluginConfig) Reset() { *x = PluginConfig{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[42] + mi := &file_gripql_proto_msgTypes[43] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -3282,7 +3337,7 @@ func (x *PluginConfig) String() string { func (*PluginConfig) ProtoMessage() {} func (x *PluginConfig) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[42] + mi := &file_gripql_proto_msgTypes[43] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -3295,7 +3350,7 @@ func (x *PluginConfig) ProtoReflect() protoreflect.Message { // Deprecated: Use PluginConfig.ProtoReflect.Descriptor instead. func (*PluginConfig) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{42} + return file_gripql_proto_rawDescGZIP(), []int{43} } func (x *PluginConfig) GetName() string { @@ -3331,7 +3386,7 @@ type PluginStatus struct { func (x *PluginStatus) Reset() { *x = PluginStatus{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[43] + mi := &file_gripql_proto_msgTypes[44] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -3344,7 +3399,7 @@ func (x *PluginStatus) String() string { func (*PluginStatus) ProtoMessage() {} func (x *PluginStatus) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[43] + mi := &file_gripql_proto_msgTypes[44] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -3357,7 +3412,7 @@ func (x *PluginStatus) ProtoReflect() protoreflect.Message { // Deprecated: Use PluginStatus.ProtoReflect.Descriptor instead. func (*PluginStatus) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{43} + return file_gripql_proto_rawDescGZIP(), []int{44} } func (x *PluginStatus) GetName() string { @@ -3385,7 +3440,7 @@ type ListDriversResponse struct { func (x *ListDriversResponse) Reset() { *x = ListDriversResponse{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[44] + mi := &file_gripql_proto_msgTypes[45] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -3398,7 +3453,7 @@ func (x *ListDriversResponse) String() string { func (*ListDriversResponse) ProtoMessage() {} func (x *ListDriversResponse) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[44] + mi := &file_gripql_proto_msgTypes[45] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ -3411,7 +3466,7 @@ func (x *ListDriversResponse) ProtoReflect() protoreflect.Message { // Deprecated: Use ListDriversResponse.ProtoReflect.Descriptor instead. func (*ListDriversResponse) Descriptor() ([]byte, []int) { - return file_gripql_proto_rawDescGZIP(), []int{44} + return file_gripql_proto_rawDescGZIP(), []int{45} } func (x *ListDriversResponse) GetDrivers() []string { @@ -3432,7 +3487,7 @@ type ListPluginsResponse struct { func (x *ListPluginsResponse) Reset() { *x = ListPluginsResponse{} if protoimpl.UnsafeEnabled { - mi := &file_gripql_proto_msgTypes[45] + mi := &file_gripql_proto_msgTypes[46] ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) ms.StoreMessageInfo(mi) } @@ -3445,7 +3500,7 @@ func (x *ListPluginsResponse) String() string { func (*ListPluginsResponse) ProtoMessage() {} func (x *ListPluginsResponse) ProtoReflect() protoreflect.Message { - mi := &file_gripql_proto_msgTypes[45] + mi := &file_gripql_proto_msgTypes[46] if protoimpl.UnsafeEnabled && x != nil { ms := protoimpl.X.MessageStateOf(protoimpl.Pointer(x)) if ms.LoadMessageInfo() == nil { @@ 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[]byte { } var file_gripql_proto_enumTypes = make([]protoimpl.EnumInfo, 3) -var file_gripql_proto_msgTypes = make([]protoimpl.MessageInfo, 48) +var file_gripql_proto_msgTypes = make([]protoimpl.MessageInfo, 49) var file_gripql_proto_goTypes = []any{ (Condition)(0), // 0: gripql.Condition (JobState)(0), // 1: gripql.JobState @@ -4098,56 +4158,57 @@ var file_gripql_proto_goTypes = []any{ (*JobStatus)(nil), // 30: gripql.JobStatus (*EditResult)(nil), // 31: gripql.EditResult (*BulkEditResult)(nil), // 32: gripql.BulkEditResult - (*GraphElement)(nil), // 33: gripql.GraphElement - (*GraphID)(nil), // 34: gripql.GraphID - (*ElementID)(nil), // 35: gripql.ElementID - (*IndexID)(nil), // 36: gripql.IndexID - (*Timestamp)(nil), // 37: gripql.Timestamp - (*Empty)(nil), // 38: gripql.Empty - (*ListGraphsResponse)(nil), // 39: gripql.ListGraphsResponse - (*ListIndicesResponse)(nil), // 40: gripql.ListIndicesResponse - (*ListLabelsResponse)(nil), // 41: gripql.ListLabelsResponse - (*TableInfo)(nil), // 42: gripql.TableInfo - (*DeleteData)(nil), // 43: gripql.DeleteData - (*RawJson)(nil), // 44: gripql.RawJson - (*PluginConfig)(nil), // 45: gripql.PluginConfig - (*PluginStatus)(nil), // 46: gripql.PluginStatus - (*ListDriversResponse)(nil), // 47: gripql.ListDriversResponse - (*ListPluginsResponse)(nil), // 48: gripql.ListPluginsResponse - nil, // 49: gripql.TableInfo.LinkMapEntry - nil, // 50: gripql.PluginConfig.ConfigEntry - (*structpb.ListValue)(nil), // 51: google.protobuf.ListValue - (*structpb.Value)(nil), // 52: google.protobuf.Value - (*structpb.Struct)(nil), // 53: google.protobuf.Struct + (*BulkJsonEditResult)(nil), // 33: gripql.BulkJsonEditResult + (*GraphElement)(nil), // 34: gripql.GraphElement + (*GraphID)(nil), // 35: gripql.GraphID + (*ElementID)(nil), // 36: gripql.ElementID + (*IndexID)(nil), // 37: gripql.IndexID + (*Timestamp)(nil), // 38: gripql.Timestamp + (*Empty)(nil), // 39: gripql.Empty + (*ListGraphsResponse)(nil), // 40: gripql.ListGraphsResponse + (*ListIndicesResponse)(nil), // 41: gripql.ListIndicesResponse + (*ListLabelsResponse)(nil), // 42: gripql.ListLabelsResponse + (*TableInfo)(nil), // 43: gripql.TableInfo + (*DeleteData)(nil), // 44: gripql.DeleteData + (*RawJson)(nil), // 45: gripql.RawJson + (*PluginConfig)(nil), // 46: gripql.PluginConfig + (*PluginStatus)(nil), // 47: gripql.PluginStatus + (*ListDriversResponse)(nil), // 48: gripql.ListDriversResponse + (*ListPluginsResponse)(nil), // 49: gripql.ListPluginsResponse + nil, // 50: gripql.TableInfo.LinkMapEntry + nil, // 51: gripql.PluginConfig.ConfigEntry + (*structpb.ListValue)(nil), // 52: google.protobuf.ListValue + (*structpb.Value)(nil), // 53: google.protobuf.Value + (*structpb.Struct)(nil), // 54: google.protobuf.Struct } var file_gripql_proto_depIdxs = []int32{ 25, // 0: gripql.Graph.vertices:type_name -> gripql.Vertex 26, // 1: gripql.Graph.edges:type_name -> gripql.Edge 6, // 2: gripql.GraphQuery.query:type_name -> gripql.GraphStatement 6, // 3: gripql.QuerySet.query:type_name -> gripql.GraphStatement - 51, // 4: gripql.GraphStatement.v:type_name -> google.protobuf.ListValue - 51, // 5: gripql.GraphStatement.e:type_name -> google.protobuf.ListValue - 51, // 6: gripql.GraphStatement.in:type_name -> google.protobuf.ListValue - 51, // 7: gripql.GraphStatement.out:type_name -> google.protobuf.ListValue - 51, // 8: gripql.GraphStatement.both:type_name -> google.protobuf.ListValue - 51, // 9: gripql.GraphStatement.in_e:type_name -> google.protobuf.ListValue - 51, // 10: gripql.GraphStatement.out_e:type_name -> google.protobuf.ListValue - 51, // 11: gripql.GraphStatement.both_e:type_name -> google.protobuf.ListValue - 51, // 12: gripql.GraphStatement.in_null:type_name -> google.protobuf.ListValue - 51, // 13: gripql.GraphStatement.out_null:type_name -> google.protobuf.ListValue - 51, // 14: gripql.GraphStatement.in_e_null:type_name -> google.protobuf.ListValue - 51, // 15: gripql.GraphStatement.out_e_null:type_name -> google.protobuf.ListValue + 52, // 4: gripql.GraphStatement.v:type_name -> google.protobuf.ListValue + 52, // 5: gripql.GraphStatement.e:type_name -> google.protobuf.ListValue + 52, // 6: gripql.GraphStatement.in:type_name -> google.protobuf.ListValue + 52, // 7: gripql.GraphStatement.out:type_name -> google.protobuf.ListValue + 52, // 8: gripql.GraphStatement.both:type_name -> google.protobuf.ListValue + 52, // 9: gripql.GraphStatement.in_e:type_name -> google.protobuf.ListValue + 52, // 10: gripql.GraphStatement.out_e:type_name -> google.protobuf.ListValue + 52, // 11: gripql.GraphStatement.both_e:type_name -> google.protobuf.ListValue + 52, // 12: gripql.GraphStatement.in_null:type_name -> google.protobuf.ListValue + 52, // 13: gripql.GraphStatement.out_null:type_name -> google.protobuf.ListValue + 52, // 14: gripql.GraphStatement.in_e_null:type_name -> google.protobuf.ListValue + 52, // 15: gripql.GraphStatement.out_e_null:type_name -> google.protobuf.ListValue 7, // 16: gripql.GraphStatement.range:type_name -> gripql.Range 20, // 17: gripql.GraphStatement.has:type_name -> gripql.HasExpression - 51, // 18: gripql.GraphStatement.has_label:type_name -> google.protobuf.ListValue - 51, // 19: gripql.GraphStatement.has_key:type_name -> google.protobuf.ListValue - 51, // 20: gripql.GraphStatement.has_id:type_name -> google.protobuf.ListValue - 51, // 21: gripql.GraphStatement.distinct:type_name -> google.protobuf.ListValue + 52, // 18: gripql.GraphStatement.has_label:type_name -> google.protobuf.ListValue + 52, // 19: gripql.GraphStatement.has_key:type_name -> google.protobuf.ListValue + 52, // 20: gripql.GraphStatement.has_id:type_name -> google.protobuf.ListValue + 52, // 21: gripql.GraphStatement.distinct:type_name -> google.protobuf.ListValue 17, // 22: gripql.GraphStatement.pivot:type_name -> gripql.PivotStep - 51, // 23: gripql.GraphStatement.fields:type_name -> google.protobuf.ListValue + 52, // 23: gripql.GraphStatement.fields:type_name -> google.protobuf.ListValue 9, // 24: gripql.GraphStatement.aggregate:type_name -> gripql.Aggregations - 52, // 25: gripql.GraphStatement.render:type_name -> google.protobuf.Value - 51, // 26: gripql.GraphStatement.path:type_name -> google.protobuf.ListValue + 53, // 25: gripql.GraphStatement.render:type_name -> google.protobuf.Value + 52, // 26: gripql.GraphStatement.path:type_name -> google.protobuf.ListValue 22, // 27: gripql.GraphStatement.jump:type_name -> gripql.Jump 23, // 28: gripql.GraphStatement.set:type_name -> gripql.Set 24, // 29: gripql.GraphStatement.increment:type_name -> gripql.Increment @@ -4159,77 +4220,77 @@ var file_gripql_proto_depIdxs = []int32{ 14, // 35: gripql.Aggregate.field:type_name -> gripql.FieldAggregation 15, // 36: gripql.Aggregate.type:type_name -> gripql.TypeAggregation 16, // 37: gripql.Aggregate.count:type_name -> gripql.CountAggregation - 52, // 38: gripql.NamedAggregationResult.key:type_name -> google.protobuf.Value + 53, // 38: gripql.NamedAggregationResult.key:type_name -> google.protobuf.Value 20, // 39: gripql.HasExpressionList.expressions:type_name -> gripql.HasExpression 19, // 40: gripql.HasExpression.and:type_name -> gripql.HasExpressionList 19, // 41: gripql.HasExpression.or:type_name -> gripql.HasExpressionList 20, // 42: gripql.HasExpression.not:type_name -> gripql.HasExpression 21, // 43: gripql.HasExpression.condition:type_name -> gripql.HasCondition - 52, // 44: gripql.HasCondition.value:type_name -> google.protobuf.Value + 53, // 44: gripql.HasCondition.value:type_name -> google.protobuf.Value 0, // 45: gripql.HasCondition.condition:type_name -> gripql.Condition 20, // 46: gripql.Jump.expression:type_name -> gripql.HasExpression - 52, // 47: gripql.Set.value:type_name -> google.protobuf.Value - 53, // 48: gripql.Vertex.data:type_name -> google.protobuf.Struct - 53, // 49: gripql.Edge.data:type_name -> google.protobuf.Struct + 53, // 47: gripql.Set.value:type_name -> google.protobuf.Value + 54, // 48: gripql.Vertex.data:type_name -> google.protobuf.Struct + 54, // 49: gripql.Edge.data:type_name -> google.protobuf.Struct 25, // 50: gripql.QueryResult.vertex:type_name -> gripql.Vertex 26, // 51: gripql.QueryResult.edge:type_name -> gripql.Edge 18, // 52: gripql.QueryResult.aggregations:type_name -> gripql.NamedAggregationResult - 52, // 53: gripql.QueryResult.render:type_name -> google.protobuf.Value - 51, // 54: gripql.QueryResult.path:type_name -> google.protobuf.ListValue + 53, // 53: gripql.QueryResult.render:type_name -> google.protobuf.Value + 52, // 54: gripql.QueryResult.path:type_name -> google.protobuf.ListValue 6, // 55: gripql.ExtendQuery.query:type_name -> gripql.GraphStatement 1, // 56: gripql.JobStatus.state:type_name -> gripql.JobState 6, // 57: gripql.JobStatus.query:type_name -> gripql.GraphStatement 25, // 58: gripql.GraphElement.vertex:type_name -> gripql.Vertex 26, // 59: gripql.GraphElement.edge:type_name -> gripql.Edge - 36, // 60: gripql.ListIndicesResponse.indices:type_name -> gripql.IndexID - 49, // 61: gripql.TableInfo.link_map:type_name -> gripql.TableInfo.LinkMapEntry - 53, // 62: gripql.RawJson.data:type_name -> google.protobuf.Struct - 50, // 63: gripql.PluginConfig.config:type_name -> gripql.PluginConfig.ConfigEntry + 37, // 60: gripql.ListIndicesResponse.indices:type_name -> gripql.IndexID + 50, // 61: gripql.TableInfo.link_map:type_name -> gripql.TableInfo.LinkMapEntry + 54, // 62: gripql.RawJson.data:type_name -> google.protobuf.Struct + 51, // 63: gripql.PluginConfig.config:type_name -> gripql.PluginConfig.ConfigEntry 4, // 64: gripql.Query.Traversal:input_type -> gripql.GraphQuery - 35, // 65: gripql.Query.GetVertex:input_type -> gripql.ElementID - 35, // 66: gripql.Query.GetEdge:input_type -> gripql.ElementID - 34, // 67: gripql.Query.GetTimestamp:input_type -> gripql.GraphID - 34, // 68: gripql.Query.GetSchema:input_type -> gripql.GraphID - 34, // 69: gripql.Query.GetMapping:input_type -> gripql.GraphID - 38, // 70: gripql.Query.ListGraphs:input_type -> gripql.Empty - 34, // 71: gripql.Query.ListIndices:input_type -> gripql.GraphID - 34, // 72: gripql.Query.ListLabels:input_type -> gripql.GraphID - 38, // 73: gripql.Query.ListTables:input_type -> gripql.Empty + 36, // 65: gripql.Query.GetVertex:input_type -> gripql.ElementID + 36, // 66: gripql.Query.GetEdge:input_type -> gripql.ElementID + 35, // 67: gripql.Query.GetTimestamp:input_type -> gripql.GraphID + 35, // 68: gripql.Query.GetSchema:input_type -> gripql.GraphID + 35, // 69: gripql.Query.GetMapping:input_type -> gripql.GraphID + 39, // 70: gripql.Query.ListGraphs:input_type -> gripql.Empty + 35, // 71: gripql.Query.ListIndices:input_type -> gripql.GraphID + 35, // 72: gripql.Query.ListLabels:input_type -> gripql.GraphID + 39, // 73: gripql.Query.ListTables:input_type -> gripql.Empty 4, // 74: gripql.Job.Submit:input_type -> gripql.GraphQuery - 34, // 75: gripql.Job.ListJobs:input_type -> gripql.GraphID + 35, // 75: gripql.Job.ListJobs:input_type -> gripql.GraphID 4, // 76: gripql.Job.SearchJobs:input_type -> gripql.GraphQuery 28, // 77: gripql.Job.DeleteJob:input_type -> gripql.QueryJob 28, // 78: gripql.Job.GetJob:input_type -> gripql.QueryJob 28, // 79: gripql.Job.ViewJob:input_type -> gripql.QueryJob 29, // 80: gripql.Job.ResumeJob:input_type -> gripql.ExtendQuery - 33, // 81: gripql.Edit.AddVertex:input_type -> gripql.GraphElement - 33, // 82: gripql.Edit.AddEdge:input_type -> gripql.GraphElement - 33, // 83: gripql.Edit.BulkAdd:input_type -> gripql.GraphElement - 44, // 84: gripql.Edit.BulkAddRaw:input_type -> gripql.RawJson - 34, // 85: gripql.Edit.AddGraph:input_type -> gripql.GraphID - 34, // 86: gripql.Edit.DeleteGraph:input_type -> gripql.GraphID - 43, // 87: gripql.Edit.BulkDelete:input_type -> gripql.DeleteData - 35, // 88: gripql.Edit.DeleteVertex:input_type -> gripql.ElementID - 35, // 89: gripql.Edit.DeleteEdge:input_type -> gripql.ElementID - 36, // 90: gripql.Edit.AddIndex:input_type -> gripql.IndexID - 36, // 91: gripql.Edit.DeleteIndex:input_type -> gripql.IndexID + 34, // 81: gripql.Edit.AddVertex:input_type -> gripql.GraphElement + 34, // 82: gripql.Edit.AddEdge:input_type -> gripql.GraphElement + 34, // 83: gripql.Edit.BulkAdd:input_type -> gripql.GraphElement + 45, // 84: gripql.Edit.BulkAddRaw:input_type -> gripql.RawJson + 35, // 85: gripql.Edit.AddGraph:input_type -> gripql.GraphID + 35, // 86: gripql.Edit.DeleteGraph:input_type -> gripql.GraphID + 44, // 87: gripql.Edit.BulkDelete:input_type -> gripql.DeleteData + 36, // 88: gripql.Edit.DeleteVertex:input_type -> gripql.ElementID + 36, // 89: gripql.Edit.DeleteEdge:input_type -> gripql.ElementID + 37, // 90: gripql.Edit.AddIndex:input_type -> gripql.IndexID + 37, // 91: gripql.Edit.DeleteIndex:input_type -> gripql.IndexID 3, // 92: gripql.Edit.AddSchema:input_type -> gripql.Graph - 44, // 93: gripql.Edit.AddJsonSchema:input_type -> gripql.RawJson - 34, // 94: gripql.Edit.SampleSchema:input_type -> gripql.GraphID + 45, // 93: gripql.Edit.AddJsonSchema:input_type -> gripql.RawJson + 35, // 94: gripql.Edit.SampleSchema:input_type -> gripql.GraphID 3, // 95: gripql.Edit.AddMapping:input_type -> gripql.Graph - 45, // 96: gripql.Configure.StartPlugin:input_type -> gripql.PluginConfig - 38, // 97: gripql.Configure.ListPlugins:input_type -> gripql.Empty - 38, // 98: gripql.Configure.ListDrivers:input_type -> gripql.Empty + 46, // 96: gripql.Configure.StartPlugin:input_type -> gripql.PluginConfig + 39, // 97: gripql.Configure.ListPlugins:input_type -> gripql.Empty + 39, // 98: gripql.Configure.ListDrivers:input_type -> gripql.Empty 27, // 99: gripql.Query.Traversal:output_type -> gripql.QueryResult 25, // 100: gripql.Query.GetVertex:output_type -> gripql.Vertex 26, // 101: gripql.Query.GetEdge:output_type -> gripql.Edge - 37, // 102: gripql.Query.GetTimestamp:output_type -> gripql.Timestamp + 38, // 102: gripql.Query.GetTimestamp:output_type -> gripql.Timestamp 3, // 103: gripql.Query.GetSchema:output_type -> gripql.Graph 3, // 104: gripql.Query.GetMapping:output_type -> gripql.Graph - 39, // 105: gripql.Query.ListGraphs:output_type -> gripql.ListGraphsResponse - 40, // 106: gripql.Query.ListIndices:output_type -> gripql.ListIndicesResponse - 41, // 107: gripql.Query.ListLabels:output_type -> gripql.ListLabelsResponse - 42, // 108: gripql.Query.ListTables:output_type -> gripql.TableInfo + 40, // 105: gripql.Query.ListGraphs:output_type -> gripql.ListGraphsResponse + 41, // 106: gripql.Query.ListIndices:output_type -> gripql.ListIndicesResponse + 42, // 107: gripql.Query.ListLabels:output_type -> gripql.ListLabelsResponse + 43, // 108: gripql.Query.ListTables:output_type -> gripql.TableInfo 28, // 109: gripql.Job.Submit:output_type -> gripql.QueryJob 28, // 110: gripql.Job.ListJobs:output_type -> gripql.QueryJob 30, // 111: gripql.Job.SearchJobs:output_type -> gripql.JobStatus @@ -4240,7 +4301,7 @@ var file_gripql_proto_depIdxs = []int32{ 31, // 116: gripql.Edit.AddVertex:output_type -> gripql.EditResult 31, // 117: gripql.Edit.AddEdge:output_type -> gripql.EditResult 32, // 118: gripql.Edit.BulkAdd:output_type -> gripql.BulkEditResult - 32, // 119: gripql.Edit.BulkAddRaw:output_type -> gripql.BulkEditResult + 33, // 119: gripql.Edit.BulkAddRaw:output_type -> gripql.BulkJsonEditResult 31, // 120: gripql.Edit.AddGraph:output_type -> gripql.EditResult 31, // 121: gripql.Edit.DeleteGraph:output_type -> gripql.EditResult 31, // 122: gripql.Edit.BulkDelete:output_type -> gripql.EditResult @@ -4252,9 +4313,9 @@ var file_gripql_proto_depIdxs = []int32{ 31, // 128: gripql.Edit.AddJsonSchema:output_type -> gripql.EditResult 3, // 129: gripql.Edit.SampleSchema:output_type -> gripql.Graph 31, // 130: gripql.Edit.AddMapping:output_type -> gripql.EditResult - 46, // 131: gripql.Configure.StartPlugin:output_type -> gripql.PluginStatus - 48, // 132: gripql.Configure.ListPlugins:output_type -> gripql.ListPluginsResponse - 47, // 133: gripql.Configure.ListDrivers:output_type -> gripql.ListDriversResponse + 47, // 131: gripql.Configure.StartPlugin:output_type -> gripql.PluginStatus + 49, // 132: gripql.Configure.ListPlugins:output_type -> gripql.ListPluginsResponse + 48, // 133: gripql.Configure.ListDrivers:output_type -> gripql.ListDriversResponse 99, // [99:134] is the sub-list for method output_type 64, // [64:99] is the sub-list for method input_type 64, // [64:64] is the sub-list for extension type_name @@ -4629,7 +4690,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[30].Exporter = func(v any, i int) any { - switch v := v.(*GraphElement); i { + switch v := v.(*BulkJsonEditResult); i { case 0: return &v.state case 1: @@ -4641,7 +4702,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[31].Exporter = func(v any, i int) any { - switch v := v.(*GraphID); i { + switch v := v.(*GraphElement); i { case 0: return &v.state case 1: @@ -4653,7 +4714,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[32].Exporter = func(v any, i int) any { - switch v := v.(*ElementID); i { + switch v := v.(*GraphID); i { case 0: return &v.state case 1: @@ -4665,7 +4726,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[33].Exporter = func(v any, i int) any { - switch v := v.(*IndexID); i { + switch v := v.(*ElementID); i { case 0: return &v.state case 1: @@ -4677,7 +4738,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[34].Exporter = func(v any, i int) any { - switch v := v.(*Timestamp); i { + switch v := v.(*IndexID); i { case 0: return &v.state case 1: @@ -4689,7 +4750,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[35].Exporter = func(v any, i int) any { - switch v := v.(*Empty); i { + switch v := v.(*Timestamp); i { case 0: return &v.state case 1: @@ -4701,7 +4762,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[36].Exporter = func(v any, i int) any { - switch v := v.(*ListGraphsResponse); i { + switch v := v.(*Empty); i { case 0: return &v.state case 1: @@ -4713,7 +4774,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[37].Exporter = func(v any, i int) any { - switch v := v.(*ListIndicesResponse); i { + switch v := v.(*ListGraphsResponse); i { case 0: return &v.state case 1: @@ -4725,7 +4786,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[38].Exporter = func(v any, i int) any { - switch v := v.(*ListLabelsResponse); i { + switch v := v.(*ListIndicesResponse); i { case 0: return &v.state case 1: @@ -4737,7 +4798,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[39].Exporter = func(v any, i int) any { - switch v := v.(*TableInfo); i { + switch v := v.(*ListLabelsResponse); i { case 0: return &v.state case 1: @@ -4749,7 +4810,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[40].Exporter = func(v any, i int) any { - switch v := v.(*DeleteData); i { + switch v := v.(*TableInfo); i { case 0: return &v.state case 1: @@ -4761,7 +4822,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[41].Exporter = func(v any, i int) any { - switch v := v.(*RawJson); i { + switch v := v.(*DeleteData); i { case 0: return &v.state case 1: @@ -4773,7 +4834,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[42].Exporter = func(v any, i int) any { - switch v := v.(*PluginConfig); i { + switch v := v.(*RawJson); i { case 0: return &v.state case 1: @@ -4785,7 +4846,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[43].Exporter = func(v any, i int) any { - switch v := v.(*PluginStatus); i { + switch v := v.(*PluginConfig); i { case 0: return &v.state case 1: @@ -4797,7 +4858,7 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[44].Exporter = func(v any, i int) any { - switch v := v.(*ListDriversResponse); i { + switch v := v.(*PluginStatus); i { case 0: return &v.state case 1: @@ -4809,6 +4870,18 @@ func file_gripql_proto_init() { } } file_gripql_proto_msgTypes[45].Exporter = func(v any, i int) any { + switch v := v.(*ListDriversResponse); i { + case 0: + return &v.state + case 1: + return &v.sizeCache + case 2: + return &v.unknownFields + default: + return nil + } + } + file_gripql_proto_msgTypes[46].Exporter = func(v any, i int) any { switch v := v.(*ListPluginsResponse); i { case 0: return &v.state @@ -4884,7 +4957,7 @@ func file_gripql_proto_init() { GoPackagePath: reflect.TypeOf(x{}).PkgPath(), RawDescriptor: file_gripql_proto_rawDesc, NumEnums: 3, - NumMessages: 48, + NumMessages: 49, NumExtensions: 0, NumServices: 4, }, diff --git a/gripql/gripql.proto b/gripql/gripql.proto index 320e673d..d441cef8 100644 --- a/gripql/gripql.proto +++ b/gripql/gripql.proto @@ -245,6 +245,11 @@ message BulkEditResult { int32 error_count = 2; } +message BulkJsonEditResult{ + int32 insert_count = 1; + repeated string errors = 3; +} + message GraphElement { string graph = 1; Vertex vertex = 2; @@ -446,7 +451,7 @@ service Edit { }; } - rpc BulkAddRaw (stream RawJson) returns (BulkEditResult) { + rpc BulkAddRaw (stream RawJson) returns (BulkJsonEditResult) { option (google.api.http) = { post: "/v1/rawJson" }; diff --git a/gripql/gripql_grpc.pb.go b/gripql/gripql_grpc.pb.go index 03cccf30..f8528190 100644 --- a/gripql/gripql_grpc.pb.go +++ b/gripql/gripql_grpc.pb.go @@ -1048,7 +1048,7 @@ func (c *editClient) BulkAddRaw(ctx context.Context, opts ...grpc.CallOption) (E type Edit_BulkAddRawClient interface { Send(*RawJson) error - CloseAndRecv() (*BulkEditResult, error) + CloseAndRecv() (*BulkJsonEditResult, error) grpc.ClientStream } @@ -1060,11 +1060,11 @@ func (x *editBulkAddRawClient) Send(m *RawJson) error { return x.ClientStream.SendMsg(m) } -func (x *editBulkAddRawClient) CloseAndRecv() (*BulkEditResult, error) { +func (x *editBulkAddRawClient) CloseAndRecv() (*BulkJsonEditResult, error) { if err := x.ClientStream.CloseSend(); err != nil { return nil, err } - m := new(BulkEditResult) + m := new(BulkJsonEditResult) if err := x.ClientStream.RecvMsg(m); err != nil { return nil, err } @@ -1332,7 +1332,7 @@ func _Edit_BulkAddRaw_Handler(srv interface{}, stream grpc.ServerStream) error { } type Edit_BulkAddRawServer interface { - SendAndClose(*BulkEditResult) error + SendAndClose(*BulkJsonEditResult) error Recv() (*RawJson, error) grpc.ServerStream } @@ -1341,7 +1341,7 @@ type editBulkAddRawServer struct { grpc.ServerStream } -func (x *editBulkAddRawServer) SendAndClose(m *BulkEditResult) error { +func (x *editBulkAddRawServer) SendAndClose(m *BulkJsonEditResult) error { return x.ServerStream.SendMsg(m) } diff --git a/server/api.go b/server/api.go index 899fde53..4da5975e 100644 --- a/server/api.go +++ b/server/api.go @@ -224,12 +224,12 @@ func (server *GripServer) addEdge(ctx context.Context, elem *gripql.GraphElement func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error { var insertCount int32 - var errorCount int32 wg := &sync.WaitGroup{} var populated bool var sch *gripql.Graph out := &graph.GraphSchema{Classes: map[string]*jsonschema.Schema{}, Compiler: nil} elementStream := make(chan *gdbi.GraphElement) + var retErrs []string for { var err error class, err := stream.Recv() @@ -241,13 +241,13 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error sch, err = server.getGraph(class.Graph + "__schema__") if err != nil { log.Errorf("Error loading schemas: %v", err) - errorCount++ + retErrs = append(retErrs, err.Error()) break } out, err = server.LoadSchemas(class.ProjectId, sch, out) if err != nil { log.Errorf("Error loading schemas: %v", err) - errorCount++ + retErrs = append(retErrs, err.Error()) break } populated = true @@ -255,14 +255,14 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error gdb, err := server.getGraphDB(class.Graph) if err != nil { - errorCount++ - continue + retErrs = append(retErrs, err.Error()) + break } graph, err := gdb.Graph(class.Graph) if err != nil { - log.WithFields(log.Fields{"error": err}).Error("BulkAdd: error") - errorCount++ + log.WithFields(log.Fields{"error": err}).Error("BulkAddRaw: error") + retErrs = append(retErrs, err.Error()) continue } @@ -272,8 +272,7 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error err := graph.BulkAdd(elementStream) if err != nil { log.WithFields(log.Fields{"graph": class.Graph, "error": err}).Error("BulkAddRaw: error") - // not a good representation of the true number of errors - errorCount++ + retErrs = append(retErrs, err.Error()) } }() @@ -281,14 +280,14 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error resourceType, ok := classData["resourceType"].(string) if !ok { log.WithFields(log.Fields{"error": fmt.Errorf("row %s does not have required field resourceType", classData)}).Error("BulkAddRaw: streaming error") - errorCount++ + retErrs = append(retErrs, err.Error()) continue } result, err := out.Generate(resourceType, classData, false, class.ProjectId) if err != nil { log.WithFields(log.Fields{"error": err}).Errorf("BulkAddRaw: validation error for %s: %s", resourceType, classData) - errorCount++ + retErrs = append(retErrs, err.Error()) continue } @@ -320,7 +319,7 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error } close(elementStream) wg.Wait() - return stream.SendAndClose(&gripql.BulkEditResult{InsertCount: insertCount, ErrorCount: errorCount}) + return stream.SendAndClose(&gripql.BulkJsonEditResult{InsertCount: insertCount, Errors: retErrs}) } // BulkAdd a stream of inputs and loads them into the graph From a7f6fdd480510bc41dda95d48c073db37d16add3 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Tue, 19 Nov 2024 15:08:16 -0800 Subject: [PATCH 19/35] fix tests --- conformance/tests/ot_bulk_raw.py | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/conformance/tests/ot_bulk_raw.py b/conformance/tests/ot_bulk_raw.py index ecff52b0..21e89980 100644 --- a/conformance/tests/ot_bulk_raw.py +++ b/conformance/tests/ot_bulk_raw.py @@ -19,8 +19,8 @@ def test_bulk_add_raw(man): err = bulkRaw.execute() if err["insertCount"] != 4: errors.append(f"Wrong number of inserted vertices {err['insertCount']} != 4") - if err["errorCount"] != 0: - errors.append(f"Wrong number of errors {err['errorCount']} != 0") + if len(err["errors"]) != 0: + errors.append(f"Wrong number of errors {len(err['errors'])} != 0") edge = G.getVertex("838e42fb-a65d-4039-9f83-59c37b1ae889") if "gid" not in edge and edge["gid"] != "838e42fb-a65d-4039-9f83-59c37b1ae889": @@ -49,8 +49,8 @@ def test_bulk_add_raw_validation_error(man): bulkRaw.addJson(data={"resourceType":"Patient","id":"041095c0-41b7-4cad-be5d-5942f5e72331","meta":{"versionId":"1","lastUpdated":"2023-01-26T15:09:27.533+00:00","source":"#2bs0ExNirFINpsaq","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient"]},"text":{"status":"generated","div":"
Generated by Synthea.Version identifier: v2.6.1-174-g66c40fa7\n . Person seed: -5631757156564495430 Population seed: 1626964256551
"},"extension":[{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-race","extension":[{"url":"ombCategory","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2106-3","display":"White"}},{"url":"text","valueString":"White"}]},{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity","extension":[{"url":"ombCategory","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2186-5","display":"Non Hispanic or Latino"}},{"url":"text","valueString":"Non Hispanic or Latino"}]},{"url":"http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName","valueString":"Johnie961 Howe413"},{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex","valueCode":"M"},{"url":"http://hl7.org/fhir/StructureDefinition/patient-birthPlace","valueAddress":{"city":"Leominster","state":"Massachusetts","country":"US"}},{"url":"http://synthetichealth.github.io/synthea/disability-adjusted-life-years","valueDecimal":11.356925230821238},{"url":"http://synthetichealth.github.io/synthea/quality-adjusted-life-years","valueDecimal":84.64307476917877}],"ider":[{"system":"https://github.com/synthetichealth/synthea","value":"98a6c929-b2cb-9719-ba06-ae2d693d1964"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"MR","display":"Medical Record Number"}],"text":"Medical Record Number"},"system":"http://hospital.smarthealthit.org","value":"98a6c929-b2cb-9719-ba06-ae2d693d1964"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"SS","display":"Social Security Number"}],"text":"Social Security Number"},"system":"http://hl7.org/fhir/sid/us-ssn","value":"999-54-8135"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"DL","display":"Driver's License"}],"text":"Driver's License"},"system":"urn:oid:2.16.840.1.113883.4.3.25","value":"S99944955"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"PPN","display":"Passport Number"}],"text":"Passport Number"},"system":"http://standardhealthrecord.org/fhir/StructureDefinition/passportNumber","value":"X88746034X"}],"name":[{"use":"official","family":"Schiller186","given":["Stewart672"],"prefix":["Mr."]}],"telecom":[{"system":"phone","value":"555-164-3643","use":"home"}],"gender":"male","birthDate":"1924-09-05","address":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/geolocation","extension":[{"url":"latitude","valueDecimal":42.251447299625795},{"url":"longitude","valueDecimal":-71.10142275622101}]}],"line":["955 Willms Manor"],"city":"Milton","state":"MA","country":"US"}],"maritalStatus":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v3-MaritalStatus","code":"M","display":"M"}],"text":"M"},"multipleBirthBoolean":False,"communication":[{"language":{"coding":[{"system":"urn:ietf:bcp:47","code":"en-US","display":"English"}],"text":"English"}}],"links":[]}) err = bulkRaw.execute() - if err['insertCount'] != 3 or err['errorCount'] != 1: - errors.append(f"validation error causes -1 insertCount +1 error: {err['insertCount']} != 3 or {err['errorCount']} != 1") + if err['insertCount'] != 3 or len(err['errors']) != 1: + errors.append(f"validation error causes -1 insertCount +1 error: {err['insertCount']} != 3 or {len(err['errors'])} != 1") return errors @@ -63,7 +63,7 @@ def test_bulk_add_raw_no_schema(man): bulkRaw = G.bulkAddRaw() bulkRaw.addJson(data={"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"230690007","display":"Stroke","system":"http://snomed.info/sct"}],"text":"Stroke"},"encounter":{"reference":"Encounter/f78a1442-683a-4ea2-adca-161902be19cb"},"id":"838e42fb-a65d-4039-9f83-59c37b1ae889","links":[{"href":"Patient/45c11dad-2b38-4c8e-822e-7abff8a1ee1d","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:21:56.658+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#DmW9sueQ4yuQdyA9","versionId":"1"},"onsetDateTime":"2013-08-24T15:40:53-04:00","recordedDate":"2013-08-24T15:40:53-04:00","resourceType":"Condition","subject":{"reference":"Patient/45c11dad-2b38-4c8e-822e-7abff8a1ee1d"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}) err = bulkRaw.execute() - if err["errorCount"] != 1: + if len(err["errors"]) != 1: errors.append("No schema was provided so error count should equal 1") return [] From b8d9a0ab337afd82bca599c41039fdd02e7adbb9 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Wed, 20 Nov 2024 11:18:08 -0800 Subject: [PATCH 20/35] Remove elasticSearch from grip --- .github/workflows/tests.yml | 24 - Makefile | 4 - README.md | 2 +- config/config.go | 29 +- docs/categories/index.xml | 11 +- docs/docs/commands/drop/index.html | 94 +- docs/docs/commands/er/index.html | 106 +-- docs/docs/commands/index.html | 92 +- docs/docs/commands/list/index.html | 96 +- docs/docs/commands/mongoload/index.html | 94 +- docs/docs/commands/query/index.html | 94 +- docs/docs/commands/server/index.html | 94 +- docs/docs/databases/elastic/index.html | 375 -------- docs/docs/databases/gripper/index.html | 104 +- docs/docs/databases/index.html | 92 +- docs/docs/databases/kvstore/index.html | 104 +- docs/docs/databases/mongo/index.html | 116 +-- docs/docs/databases/psql/index.html | 116 +-- docs/docs/databases/sql/index.html | 196 ++-- docs/docs/developers/index.html | 92 +- docs/docs/graphql/graph_schemas/index.html | 210 ++--- docs/docs/graphql/graphql/index.html | 110 +-- docs/docs/graphql/index.html | 92 +- docs/docs/gripper/graphmodel/index.html | 245 +++-- docs/docs/gripper/gripper/index.html | 94 +- docs/docs/gripper/index.html | 92 +- docs/docs/gripper/proxy/index.html | 106 +-- docs/docs/index.html | 98 +- docs/docs/index.xml | 371 -------- docs/docs/queries/getting_started/index.html | 200 ++-- docs/docs/queries/graph_schemas/index.html | 330 ------- docs/docs/queries/graphql/index.html | 305 ------ docs/docs/queries/index.html | 92 +- docs/docs/queries/iterations/index.html | 85 +- docs/docs/queries/jobs_api/index.html | 120 +-- docs/docs/queries/jsonpath/index.html | 232 ++--- docs/docs/queries/operations/index.html | 246 ++--- docs/docs/security/basic/index.html | 140 +-- docs/docs/security/index.html | 92 +- docs/docs/tutorials/amazon/index.html | 140 +-- docs/docs/tutorials/index.html | 92 +- .../docs/tutorials/pathway-commons/index.html | 96 +- docs/docs/tutorials/tcga-rna/index.html | 147 ++- docs/download/index.html | 112 +-- docs/graph_schemas/index.html | 356 ------- docs/index.html | 244 ++--- docs/index.xml | 346 +++---- docs/sitemap.xml | 235 ++--- docs/tags/index.xml | 11 +- elastic/convert.go | 51 - elastic/graph.go | 888 ------------------ elastic/graphdb.go | 222 ----- elastic/index.go | 236 ----- elastic/schema.go | 19 - elastic/util.go | 37 - go.mod | 6 +- go.sum | 26 - server/server.go | 3 - test/elastic.yml | 7 - test/main_test.go | 3 - test/schema_graph_test.go | 2 +- website/content/docs.md | 42 +- website/content/docs/databases/elastic.md | 28 - website/layouts/index.html | 220 ++--- 64 files changed, 2627 insertions(+), 6137 deletions(-) delete mode 100644 docs/docs/databases/elastic/index.html delete mode 100644 docs/docs/index.xml delete mode 100644 docs/docs/queries/graph_schemas/index.html delete mode 100644 docs/docs/queries/graphql/index.html delete mode 100644 docs/graph_schemas/index.html delete mode 100644 elastic/convert.go delete mode 100644 elastic/graph.go delete mode 100644 elastic/graphdb.go delete mode 100644 elastic/index.go delete mode 100644 elastic/schema.go delete mode 100644 elastic/util.go delete mode 100644 test/elastic.yml delete mode 100644 website/content/docs/databases/elastic.md diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index 2f15e4fd..226630d4 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -130,30 +130,6 @@ jobs: sleep 5 make test-conformance - - elasticTest: - needs: build - name: Elastic Test - runs-on: ubuntu-latest - steps: - - name: Check out code - uses: actions/checkout@v4 - - name: Python Dependencies for Conformance - run: pip install requests numpy - - name: Download grip - uses: actions/download-artifact@v4 - with: - name: gripBin - - name: Elastic Conformance - run: | - chmod +x grip - make start-elastic - sleep 15 - ./grip server --rpc-port 18202 --http-port 18201 --config ./test/elastic.yml & - sleep 5 - make test-conformance - - postgresTest: needs: build name: Postgres Test diff --git a/Makefile b/Makefile index e8d047d8..0af8254c 100644 --- a/Makefile +++ b/Makefile @@ -132,10 +132,6 @@ start-mongo: @docker rm -f grip-mongodb-test > /dev/null 2>&1 || echo docker run -d --name grip-mongodb-test -p 27017:27017 mongo:7.0.13-rc0-jammy > /dev/null -start-elastic: - @docker rm -f grip-es-test > /dev/null 2>&1 || echo - docker run -d --name grip-es-test -p 19200:9200 -p 9300:9300 -e "discovery.type=single-node" -e "xpack.security.enabled=false" docker.elastic.co/elasticsearch/elasticsearch:5.6.3 > /dev/null - start-postgres: @docker rm -f grip-postgres-test > /dev/null 2>&1 || echo docker run -d --name grip-postgres-test -p 15432:5432 -e POSTGRES_PASSWORD= -e POSTGRES_USER=postgres postgres:10.4 > /dev/null diff --git a/README.md b/README.md index 3bc84476..faa2232e 100644 --- a/README.md +++ b/README.md @@ -7,7 +7,7 @@ https://bmeg.github.io/grip/ -GRIP stands for GRaph Integration Platform. It provides a graph interface on top of a variety of existing database technologies including: MongoDB, Elasticsearch, PostgreSQL, MySQL, MariaDB, Badger, and LevelDB. +GRIP stands for GRaph Integration Platform. It provides a graph interface on top of a variety of existing database technologies including: MongoDB, PostgreSQL, MySQL, MariaDB, Badger, and LevelDB. Properties of an GRIP graph: diff --git a/config/config.go b/config/config.go index 0292fa83..db684f29 100644 --- a/config/config.go +++ b/config/config.go @@ -8,7 +8,6 @@ import ( "strings" "time" - "github.com/bmeg/grip/elastic" esql "github.com/bmeg/grip/existing-sql" "github.com/bmeg/grip/gripper" "github.com/bmeg/grip/log" @@ -27,17 +26,16 @@ func init() { } type DriverConfig struct { - Grids *string - Badger *string - Bolt *string - Level *string - Pebble *string - Elasticsearch *elastic.Config - MongoDB *mongo.Config - PSQL *psql.Config - ExistingSQL *esql.Config - Sqlite *sqlite.Config - Gripper *gripper.Config + Grids *string + Badger *string + Bolt *string + Level *string + Pebble *string + MongoDB *mongo.Config + PSQL *psql.Config + ExistingSQL *esql.Config + Sqlite *sqlite.Config + Gripper *gripper.Config } // Config describes the configuration for Grip. @@ -134,10 +132,6 @@ func TestifyConfig(c *Config) { if d.MongoDB != nil { d.MongoDB.DBName = "gripdb-" + rand } - if d.Elasticsearch != nil { - d.Elasticsearch.DBName = "gripdb-" + rand - d.Elasticsearch.Synchronous = true - } if d.Sqlite != nil { d.Sqlite.DBName = "gripdb-" + rand } @@ -149,9 +143,6 @@ func (c *Config) SetDefaults() { if d.MongoDB != nil { d.MongoDB.SetDefaults() } - if d.Elasticsearch != nil { - d.Elasticsearch.SetDefaults() - } } } diff --git a/docs/categories/index.xml b/docs/categories/index.xml index bb6d02fd..3bffda34 100644 --- a/docs/categories/index.xml +++ b/docs/categories/index.xml @@ -2,13 +2,10 @@ Categories on GRIP - https://bmeg.github.io/grip/categories/ + http://localhost:1313/grip/categories/ Recent content in Categories on GRIP - Hugo -- gohugo.io + Hugo en-us - - - - + - \ No newline at end of file + diff --git a/docs/docs/commands/drop/index.html b/docs/docs/commands/drop/index.html index 5401498c..4c17e5bf 100644 --- a/docs/docs/commands/drop/index.html +++ b/docs/docs/commands/drop/index.html @@ -1,6 +1,6 @@ - + @@ -12,18 +12,18 @@ - - - - - + + + + + - - + + - + @@ -32,11 +32,11 @@
-

GRIP

 +

GRIP
@@ -56,14 +56,14 @@
  • - Overview
  • - Download
    • @@ -75,7 +75,7 @@
  • @@ -84,7 +84,7 @@
  • @@ -93,7 +93,7 @@
  • @@ -102,7 +102,7 @@
  • @@ -111,7 +111,7 @@
  • @@ -120,7 +120,7 @@
  • @@ -135,16 +135,7 @@
  • -
    • - -
  • - @@ -153,7 +144,7 @@
  • @@ -162,7 +153,7 @@
  • @@ -171,7 +162,7 @@
  • @@ -180,7 +171,7 @@
  • @@ -195,7 +186,7 @@
  • @@ -204,7 +195,7 @@
  • @@ -213,7 +204,7 @@
  • @@ -228,7 +219,7 @@
  • @@ -237,7 +228,7 @@
  • @@ -246,7 +237,7 @@
  • @@ -255,7 +246,16 @@
  • +
    • + +
  • + @@ -270,7 +270,7 @@
  • @@ -279,7 +279,7 @@
  • @@ -294,7 +294,7 @@
  • @@ -309,7 +309,7 @@
  • @@ -318,7 +318,7 @@
  • @@ -355,7 +355,7 @@
    • - 
    grip drop <graph>
+    
    grip drop <graph>
 
    Deletes a graph.
    diff --git a/docs/docs/commands/er/index.html b/docs/docs/commands/er/index.html index 40481c11..82f095c2 100644 --- a/docs/docs/commands/er/index.html +++ b/docs/docs/commands/er/index.html @@ -1,6 +1,6 @@ - + @@ -12,18 +12,18 @@ - - - - - + + + + + - - + + - + @@ -32,11 +32,11 @@
    -

    GRIP

     +

    GRIP
    @@ -56,14 +56,14 @@
  • - Overview
  • - Download
    • @@ -75,7 +75,7 @@
  • @@ -84,7 +84,7 @@
  • @@ -93,7 +93,7 @@
  • @@ -102,7 +102,7 @@
  • @@ -111,7 +111,7 @@
  • @@ -120,7 +120,7 @@
  • @@ -135,16 +135,7 @@
  • -
    • - -
  • - @@ -153,7 +144,7 @@
  • @@ -162,7 +153,7 @@
  • @@ -171,7 +162,7 @@
  • @@ -180,7 +171,7 @@
  • @@ -195,7 +186,7 @@
  • @@ -204,7 +195,7 @@
  • @@ -213,7 +204,7 @@
  • @@ -228,7 +219,7 @@
  • @@ -237,7 +228,7 @@
  • @@ -246,7 +237,7 @@
  • @@ -255,7 +246,16 @@
  • +
    • + +
  • + @@ -270,7 +270,7 @@
  • @@ -279,7 +279,7 @@
  • @@ -294,7 +294,7 @@
  • @@ -309,7 +309,7 @@
  • @@ -318,7 +318,7 @@
  • @@ -355,24 +355,24 @@
    • - 
    grip er
+    
    grip er
 
    The External Resource system allows GRIP to plug into existing data systems and
 integrate them into queriable graphs. The grip er sub command acts as a client
 to the external resource plugin proxies, issues command and displays the results.
 This is often useful for debugging external resources before making them part of
 an actual graph.
    
 
    List collections provided by external resource
    
-
    grip er list
+
    grip er list
 
    Get info about a collection
    
-
    grip er info
+
    grip er info
 
    List ids from a collection
    
-
    grip er ids
+
    grip er ids
 
    List rows from a collection
    
-
    grip er rows
+
    grip er rows
 
    List rows with field match
    
-
    grip get
+
    grip get
 
    List rows with field match
    
-
    grip er query
+
    grip er query
    diff --git a/docs/docs/commands/index.html b/docs/docs/commands/index.html index 39c19c9d..554eb5d3 100644 --- a/docs/docs/commands/index.html +++ b/docs/docs/commands/index.html @@ -1,6 +1,6 @@ - + @@ -12,18 +12,18 @@ - - - - - + + + + + - - + + - + @@ -32,11 +32,11 @@
    -

    GRIP

     +

    GRIP
    @@ -56,14 +56,14 @@
  • - Overview
  • - Download
    • @@ -75,7 +75,7 @@
  • @@ -84,7 +84,7 @@
  • @@ -93,7 +93,7 @@
  • @@ -102,7 +102,7 @@
  • @@ -111,7 +111,7 @@
  • @@ -120,7 +120,7 @@
  • @@ -135,16 +135,7 @@
  • -
    • - -
  • - @@ -153,7 +144,7 @@
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  • diff --git a/docs/docs/commands/list/index.html b/docs/docs/commands/list/index.html index efcaa637..811e51a0 100644 --- a/docs/docs/commands/list/index.html +++ b/docs/docs/commands/list/index.html @@ -1,6 +1,6 @@ - + @@ -12,18 +12,18 @@ - - - - - + + + + + - - + + - + @@ -32,11 +32,11 @@
    -

    GRIP

     +

    GRIP
    @@ -56,14 +56,14 @@
  • - Overview
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    • @@ -75,7 +75,7 @@
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    • - 
    grip list
+    
    grip list
 
    graphs
    
-
    grip list graphs
+
    grip list graphs
    diff --git a/docs/docs/commands/mongoload/index.html b/docs/docs/commands/mongoload/index.html index b47faf9b..89ecbd3d 100644 --- a/docs/docs/commands/mongoload/index.html +++ b/docs/docs/commands/mongoload/index.html @@ -1,6 +1,6 @@ - + @@ -12,18 +12,18 @@ - - - - - + + + + + - - + + - + @@ -32,11 +32,11 @@
    -

    GRIP

     +

    GRIP
    @@ -56,14 +56,14 @@
  • - Overview
  • - Download
    • @@ -75,7 +75,7 @@
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    • - 
    grip mongoload
+    
    grip mongoload
    diff --git a/docs/docs/commands/query/index.html b/docs/docs/commands/query/index.html index b9f36c8f..fb578326 100644 --- a/docs/docs/commands/query/index.html +++ b/docs/docs/commands/query/index.html @@ -1,6 +1,6 @@ - + @@ -12,18 +12,18 @@ - - - - - + + + + + - - + + - + @@ -32,11 +32,11 @@
    -

    GRIP

     +

    GRIP
    @@ -56,14 +56,14 @@
  • - Overview
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    • @@ -75,7 +75,7 @@
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  • @@ -355,7 +355,7 @@
    • - 
    grip query <graph> <query>
+    
    grip query <graph> <query>
 
    Run a query on a graph.
    diff --git a/docs/docs/commands/server/index.html b/docs/docs/commands/server/index.html index f61c724d..269acecf 100644 --- a/docs/docs/commands/server/index.html +++ b/docs/docs/commands/server/index.html @@ -1,6 +1,6 @@ - + @@ -12,18 +12,18 @@ - - - - - + + + + + - - + + - + @@ -32,11 +32,11 @@
    -

    GRIP

     +

    GRIP
    @@ -56,14 +56,14 @@
  • - Overview
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    • @@ -75,7 +75,7 @@
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    • - 
    grip server
+    
    grip server
 
    The server command starts up a graph server and waits for incoming requests.
    
 
    Default Configuration
    
 
    If invoked with no arguments or config files, GRIP will start up in embedded mode,
diff --git a/docs/docs/databases/elastic/index.html b/docs/docs/databases/elastic/index.html
deleted file mode 100644
index 4badd322..00000000
--- a/docs/docs/databases/elastic/index.html
+++ /dev/null
@@ -1,375 +0,0 @@
-
-
-
-  
-  
-
-  
-  
-
-  
-  Elasticsearch · GRIP
-  
-
-  
-  
-  
-  
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-
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-  
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-
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-  
    
-    
    
-      
    
-        
    GRIP
    
-      
    
-      
-      
    
-        
    OHSU Comp Bio
    
-      
    
-    
    
-  
    
-
-
-
    
-
-  
    
-    
-  
    
-
-  
    
-    
    Elasticsearch
    
-
    GRIP supports storing vertices and edges in Elasticsearch.
    
-
    Config:
    
-
    Default: elastic
-
-Drivers:
-  elastic:
-    Elasticsearch:
-      URL: "http://localhost:9200"
-      DBName: "gripdb"
-      Username: ""
-      Password: ""
-
    
-  
    
-
-
    
-
-
diff --git a/docs/docs/databases/gripper/index.html b/docs/docs/databases/gripper/index.html
index c4e6d2b6..f8ec104c 100644
--- a/docs/docs/databases/gripper/index.html
+++ b/docs/docs/databases/gripper/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
-  
-  
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-  
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+  
+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
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    • 
           
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@@ -359,12 +359,12 @@ 
    GRIPPER
    
 
    GRIP Plugable External Resources are data systems that GRIP can combine together
 to create graphs.
    
 
    Example:
    
-
    Drivers:
-  swapi-driver:
-    Gripper:
-      ConfigFile: ./swapi.yaml
-      Graph: swapi
-
    ConfigFile - Path to GRIPPER graph map
    
+
    Drivers:
+  swapi-driver:
+    Gripper:
+      ConfigFile: ./swapi.yaml
+      Graph: swapi
+
    ConfigFile - Path to GRIPPER graph map
    
 
    Graph - Name of the graph for the mapped external resources.
    
 
   
    • 
diff --git a/docs/docs/databases/index.html b/docs/docs/databases/index.html
index 215fb562..0d46b7db 100644
--- a/docs/docs/databases/index.html
+++ b/docs/docs/databases/index.html
@@ -1,6 +1,6 @@
 
 
-
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@@ -32,11 +32,11 @@
   
    
     
    
       
    
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+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
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diff --git a/docs/docs/databases/kvstore/index.html b/docs/docs/databases/kvstore/index.html
index 5158a5ff..9b910acb 100644
--- a/docs/docs/databases/kvstore/index.html
+++ b/docs/docs/databases/kvstore/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
-  
-  
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+  
+  
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-  
-  
+  
+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
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-          Overview
    • 
           
         
         
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@@ -318,7 +318,7 @@
           
  • 
             
@@ -363,12 +363,12 @@ 
    Embedded Key Value Stores
    
 
  • LevelDB
    • 
 
 
    Config:
    
-
    Default: kv
-
-Driver:
-  kv:
-    Badger: grip.db
-
    
+
    Default: kv
+
+Driver:
+  kv:
+    Badger: grip.db
+
    
   
    
 
 
    
diff --git a/docs/docs/databases/mongo/index.html b/docs/docs/databases/mongo/index.html
index 0a61860b..5910574c 100644
--- a/docs/docs/databases/mongo/index.html
+++ b/docs/docs/databases/mongo/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
-  
-  
-  
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-  
-  
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+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
  • 
           
-          Overview
    • 
           
         
         
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-          Download
    • 
           
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  • 
             
@@ -358,18 +358,18 @@
     
    MongoDB
    
 
    GRIP supports storing vertices and edges in MongoDB.
    
 
    Config:
    
-
    Default: mongo
-
-Drivers:
-  mongo:
-    MongoDB:
-      URL: "mongodb://localhost:27000"
-      DBName: "gripdb"
-      Username: ""
-      Password: ""
-      UseCorePipeline: False
-      BatchSize: 0
-
    UseCorePipeline - Default is to use Mongo pipeline API to do graph traversals.
+
    Default: mongo
+
+Drivers:
+  mongo:
+    MongoDB:
+      URL: "mongodb://localhost:27000"
+      DBName: "gripdb"
+      Username: ""
+      Password: ""
+      UseCorePipeline: False
+      BatchSize: 0
+
    UseCorePipeline - Default is to use Mongo pipeline API to do graph traversals.
 By enabling UseCorePipeline, GRIP will do the traversal logic itself, only using
 Mongo for graph storage.
    
 
    BatchSize - For core engine operations, GRIP dispatches element lookups in
diff --git a/docs/docs/databases/psql/index.html b/docs/docs/databases/psql/index.html
index f1976d00..16931e54 100644
--- a/docs/docs/databases/psql/index.html
+++ b/docs/docs/databases/psql/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
-  
-  
-  
-  
-  
+  
+  
+  
+  
+  
   
 
   
-  
-  
+  
+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
  • 
           
-          Overview
    • 
           
         
         
  • 
           
-          Download
    • 
           
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+          
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+          
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+            
@@ -270,7 +270,7 @@
           
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@@ -318,7 +318,7 @@
           
  • 
             
@@ -358,18 +358,18 @@
     
    PostgreSQL
    
 
    GRIP supports storing vertices and edges in PostgreSQL.
    
 
    Config:
    
-
    Default: psql
-
-Drivers:
-  psql:
-    PSQL:
-      Host: localhost
-      Port: 15432
-      User: ""
-      Password: ""
-      DBName: "grip"
-      SSLMode: disable
-
    
+
    Default: psql
+
+Drivers:
+  psql:
+    PSQL:
+      Host: localhost
+      Port: 15432
+      User: ""
+      Password: ""
+      DBName: "grip"
+      SSLMode: disable
+
    
   
    • 
 
 
    
diff --git a/docs/docs/databases/sql/index.html b/docs/docs/databases/sql/index.html
index 315793bd..73bc99c0 100644
--- a/docs/docs/databases/sql/index.html
+++ b/docs/docs/databases/sql/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
-  
-  
-  
-  
-  
+  
+  
+  
+  
+  
   
 
   
-  
-  
+  
+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
  • 
           
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@@ -356,10 +356,10 @@
 
   
    
     
    Connect to an existing SQL database
    
-
    Note: This driver is being superseded by the GRIPPER engine
    
+
    Note: This driver is being superseded by the GRIPPER engine
    
 
    GRIP supports modeling an existing SQL database as a graph. GRIP has been tested against PostgreSQL, but should  work with
 MySQL (4.1+) and MariaDB.
    
-
    Since GRIP uses Go's database/sql package, we could (in thoery) support any SQL databases listed on:
+
    Since GRIP uses Go’s database/sql package, we could (in thoery) support any SQL databases listed on:
 https://github.com/golang/go/wiki/SQLDrivers. Open an issue if you
 would like to request support for your favorite SQL database.
    
 
    Configuration Notes
    
@@ -389,56 +389,56 @@ 
    Configuration Notes
    
 
    Example
    
 
    Given the following example database: https://github.com/bmeg/grip/blob/master/test/resources/postgres_smtest_data.dump
    
 
    Load this dump file into your own postgres instance by running:
    
-
    createdb --host localhost --port 15432 -U postgres smtest
-psql --host localhost --port 15432 -U postgres smtest < postgres_smtest_data.dump
-
    GRIP Configuration:
    
-
    
-Drivers:
-  esql:
-    ExistingSQL:
-      DataSourceName: "host=localhost port=15432 user=postgres dbname=smtest sslmode=disable"
-      Driver: postgres
-
-      Graphs:
-        - Graph: test-graph
-          Vertices:
-            - Table: users
-              Label: users
-              GidField: id
-
-            - Table: products
-              Label: products
-              GidField: id
-
-            - Table: purchases
-              Label: purchases
-              GidField: id
-
-          Edges:
-            - Table: purchase_items
-              Label: purchasedProducts
-              GidField: id
-              From:
-                SourceField: purchase_id
-                DestTable: purchases
-                DestField: id
-              To:
-                SourceField: product_id
-                DestTable: products
-                DestField: id
-
-            - Table: ""
-              Label: userPurchases          
-              GidField: ""
-              From:
-                SourceField: ""
-                DestTable: users
-                DestField: id
-              To:
-                SourceField: ""
-                DestTable: purchases
-                DestField: user_id
-
    
+
    createdb --host localhost --port 15432 -U postgres smtest
+psql --host localhost --port 15432 -U postgres smtest < postgres_smtest_data.dump
+
    GRIP Configuration:
    
+
    
+Drivers:
+  esql:
+    ExistingSQL:
+      DataSourceName: "host=localhost port=15432 user=postgres dbname=smtest sslmode=disable"
+      Driver: postgres
+
+      Graphs:
+        - Graph: test-graph
+          Vertices:
+            - Table: users
+              Label: users
+              GidField: id
+
+            - Table: products
+              Label: products
+              GidField: id
+
+            - Table: purchases
+              Label: purchases
+              GidField: id
+
+          Edges:
+            - Table: purchase_items
+              Label: purchasedProducts
+              GidField: id
+              From:
+                SourceField: purchase_id
+                DestTable: purchases
+                DestField: id
+              To:
+                SourceField: product_id
+                DestTable: products
+                DestField: id
+
+            - Table: ""
+              Label: userPurchases          
+              GidField: ""
+              From:
+                SourceField: ""
+                DestTable: users
+                DestField: id
+              To:
+                SourceField: ""
+                DestTable: purchases
+                DestField: user_id
+
    
   
    
 
 
    • 
diff --git a/docs/docs/developers/index.html b/docs/docs/developers/index.html
index 2bdc0cce..a6cff0ee 100644
--- a/docs/docs/developers/index.html
+++ b/docs/docs/developers/index.html
@@ -1,6 +1,6 @@
 
 
-
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+  
 
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@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
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+        
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diff --git a/docs/docs/graphql/graph_schemas/index.html b/docs/docs/graphql/graph_schemas/index.html
index cc89c023..4325ac79 100644
--- a/docs/docs/graphql/graph_schemas/index.html
+++ b/docs/docs/graphql/graph_schemas/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
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@@ -32,11 +32,11 @@
   
    
     
    
       
    
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+        
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    Graph Schemas
    
 
    Most GRIP based graphs are not required to have a strict schema. However, GraphQL requires
-a graph schema as part of it's API. To utilize the GraphQL endpoint, there must be a
+a graph schema as part of it’s API. To utilize the GraphQL endpoint, there must be a
 Graph Schema provided to be used by the GRIP engine to determine how to render a GraphQL endpoint.
 Graph schemas are themselves an instance of a graph. As such, they can be traversed like any other graph.
 The schemas are automatically added to the database following the naming pattern. {graph-name}__schema__
    
@@ -371,64 +371,64 @@ 
    Describing Graph Schemas
    
 
  • POST the schema /v1/graph/{graph-name}/schema via curl or use the CLI. grip schema post --yaml {file} --json {file}
    • 
 
  • Configure GRIP to build the schema by sampling the data in each graph.
    • 
 
-
    Server:
-  # Should the server periodically build the graph schemas?
-  AutoBuildSchemas: true
-  # How often the server should rebuild the graph schemas. Set to 0 to turn off
-  SchemaRefreshInterval: "24h"
-  # How many vertices/edges to inspect to infer the schema
-  SchemaInspectN: 500
-  # Strategy to use for selecting the vertices/edges to inspect.
-  # Random if True; first N otherwise
-  SchemaRandomSample: true
-
    Example schema
    
-
    graph: example-graph
-
-edges:
-- data: {}
- from: Human
- gid: (Human)--starship->(Starship)
- label: starship
- to: Starship
-- data: {}
- from: Human
- gid: (Human)--friend->(Human)
- label: friend
- to: Human
-- data: {}
- from: Human
- gid: (Human)--friend->(Droid)
- label: friend
- to: Droid
-- data: {}
- from: Human
- gid: (Human)--appearsIn->(Movie)
- label: appearsIn
- to: Movie
-
-vertices:
-- data:
-   name: STRING
- gid: Movie
- label: Movie
-- data:
-   length: NUMERIC
-   name: STRING
- gid: Starship
- label: Starship
-- data:
-   name: STRING
-   primaryFunction: STRING
- gid: Droid
- label: Droid
-- data:
-   height: NUMERIC
-   homePlanet: STRING
-   mass: NUMERIC
-   name: STRING
- gid: Human
- label: Human
-
    
+
    Server:
+  # Should the server periodically build the graph schemas?
+  AutoBuildSchemas: true
+  # How often the server should rebuild the graph schemas. Set to 0 to turn off
+  SchemaRefreshInterval: "24h"
+  # How many vertices/edges to inspect to infer the schema
+  SchemaInspectN: 500
+  # Strategy to use for selecting the vertices/edges to inspect.
+  # Random if True; first N otherwise
+  SchemaRandomSample: true
+
    Example schema
    
+
    graph: example-graph
+
+edges:
+- data: {}
+ from: Human
+ gid: (Human)--starship->(Starship)
+ label: starship
+ to: Starship
+- data: {}
+ from: Human
+ gid: (Human)--friend->(Human)
+ label: friend
+ to: Human
+- data: {}
+ from: Human
+ gid: (Human)--friend->(Droid)
+ label: friend
+ to: Droid
+- data: {}
+ from: Human
+ gid: (Human)--appearsIn->(Movie)
+ label: appearsIn
+ to: Movie
+
+vertices:
+- data:
+   name: STRING
+ gid: Movie
+ label: Movie
+- data:
+   length: NUMERIC
+   name: STRING
+ gid: Starship
+ label: Starship
+- data:
+   name: STRING
+   primaryFunction: STRING
+ gid: Droid
+ label: Droid
+- data:
+   height: NUMERIC
+   homePlanet: STRING
+   mass: NUMERIC
+   name: STRING
+ gid: Human
+ label: Human
+
    
   
    
 
 
    
diff --git a/docs/docs/graphql/graphql/index.html b/docs/docs/graphql/graphql/index.html
index 6df84f9f..6b4aaf5a 100644
--- a/docs/docs/graphql/graphql/index.html
+++ b/docs/docs/graphql/graphql/index.html
@@ -1,6 +1,6 @@
 
 
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+        
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    GraphQL
    
 
    GRIP supports GraphQL access of the property graphs. Currently this is read-only access to the graph.
    
 
    Load built-in example graph
    
 
    Loading the example data and the example schema:
    
-
    grip load example-graph
+
    grip load example-graph
 
    See the example graph
    
-
    grip dump example-graph --vertex --edge
+
    grip dump example-graph --vertex --edge
 
    Sample components of the graph to produce a schema and store to a file
    
-
    grip schema sample example-graph > test.schema
+
    grip schema sample example-graph > test.schema
 
    You may want to edit the schema, but if it seems correct, post it to the server:
    
-
    ./grip schema post --json test.schema
+
    ./grip schema post --json test.schema
 
    See the graph schema
    
-
    grip schema get example-graph
+
    grip schema get example-graph
 
    Example queries
    
 
    Get Types:
    
-
    curl -X POST -H "Content-Type:application/graphql" -d '{__schema{types{name}}}' http://localhost:8201/graphql/example-graph
+
    curl -X POST -H "Content-Type:application/graphql" -d '{__schema{types{name}}}' http://localhost:8201/graphql/example-graph
 
    Get Info about Human object
    
-
    curl -X POST -H "Content-Type:application/graphql" -d '{__type(name:"Human"){fields{name}}}' http://localhost:8201/graphql/example-graph
+
    curl -X POST -H "Content-Type:application/graphql" -d '{__type(name:"Human"){fields{name}}}' http://localhost:8201/graphql/example-graph
 
    Get List of all Human ids
    
-
    curl -X POST -H "Content-Type:application/graphql" -d 'query {Human{id}}' http://localhost:8201/graphql/example-graph
+
    curl -X POST -H "Content-Type:application/graphql" -d 'query {Human{id}}' http://localhost:8201/graphql/example-graph
 
    Get Human 1000 and list their friends
    
-
    curl -X POST -H "Content-Type:application/graphql" -d 'query {Human(id:"1000"){name,friend_to_Human{name}}}' http://localhost:8201/graphql/example-graph
+
    curl -X POST -H "Content-Type:application/graphql" -d 'query {Human(id:"1000"){name,friend_to_Human{name}}}' http://localhost:8201/graphql/example-graph
 
    
   
    • 
 
diff --git a/docs/docs/graphql/index.html b/docs/docs/graphql/index.html
index 8994888f..48e7e29b 100644
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diff --git a/docs/docs/gripper/graphmodel/index.html b/docs/docs/gripper/graphmodel/index.html
index 7b89a4ea..47725b40 100644
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+++ b/docs/docs/gripper/graphmodel/index.html
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    Graph Model
    
 two other collections that have been mapped to vertices.
    
 
    Runtime External Resource Config
    
 
    External resources are passed to GRIP as command line options. For the command line:
    
-
    grip server config.yaml --er tableServer=localhost:50051 --er pfb=localhost:50052
+
    grip server config.yaml --er tableServer=localhost:50051 --er pfb=localhost:50052
 
    tableServer is a ER plugin that serves table data (see gripper/test-graph)
 while pfb parses PFB based files (see https://github.com/bmeg/grip_pfb )
    
 
    The config.yaml is
    
-
    Default: badger
+
    Default: badger
 
 Drivers:
   badger:
@@ -390,51 +390,50 @@ 
    Runtime External Resource Config
    
     Gripper:
       ConfigFile: ./swapi.yaml
       Graph: swapi
-
 
    This runs with a default badger based driver, but also provides a GRIPPER based
 graph from the swapi mapping (see example graph map below).
    
 
    Example graph map
    
-
    vertices:
-  - gid: "Character:"
+
    vertices:
+  - gid: "Character:"
     label: Character
     data:
       source: tableServer
       collection: Character
 
-  - gid: "Planet:"
+  - gid: "Planet:"
     label: Planet
     data:
       collection: Planet
       source: tableServer
 
-  - gid: "Film:"
+  - gid: "Film:"
     label: Film
     data:
       collection: Film
       source: tableServer
 
-  - gid: "Species:"
+  - gid: "Species:"
     label: Species
     data:
       source: tableServer
       collection: Species
 
-  - gid: "Starship:"
+  - gid: "Starship:"
     label: Starship
     data:
       source: tableServer
       collection: Starship
 
-  - gid: "Vehicle:"
+  - gid: "Vehicle:"
     label: Vehicle
     data:
       source: tableServer
       collection: Vehicle
 
 edges:
-  - gid: "homeworld"
-    from: "Character:"
-    to: "Planet:"
+  - gid: "homeworld"
+    from: "Character:"
+    to: "Planet:"
     label: homeworld
     data:
       fieldToField:
@@ -442,8 +441,8 @@ 
    Example graph map
    
         toField: $.id
 
   - gid: species
-    from: "Character:"
-    to: "Species:"
+    from: "Character:"
+    to: "Species:"
     label: species
     data:
       fieldToField:
@@ -451,8 +450,8 @@ 
    Example graph map
    
         toField: $.id
 
   - gid: people
-    from: "Species:"
-    to: "Character:"
+    from: "Species:"
+    to: "Character:"
     label: people
     data:
       edgeTable:
@@ -462,8 +461,8 @@ 
    Example graph map
    
         toField: $.to
 
   - gid: residents
-    from: "Planet:"
-    to: "Character:"
+    from: "Planet:"
+    to: "Character:"
     label: residents
     data:
       edgeTable:
@@ -473,136 +472,136 @@ 
    Example graph map
    
         toField: $.to
 
   - gid: filmVehicles
-    from: "Film:"
-    to: "Vehicle:"
-    label: "vehicles"
+    from: "Film:"
+    to: "Vehicle:"
+    label: "vehicles"
     data:
       edgeTable:
         source: tableServer
         collection: filmVehicles
-        fromField: "$.from"
-        toField: "$.to"
+        fromField: "$.from"
+        toField: "$.to"
 
   - gid: vehicleFilms
-    to: "Film:"
-    from: "Vehicle:"
-    label: "films"
+    to: "Film:"
+    from: "Vehicle:"
+    label: "films"
     data:
       edgeTable:
         source: tableServer
         collection: filmVehicles
-        toField: "$.from"
-        fromField: "$.to"
+        toField: "$.from"
+        fromField: "$.to"
 
   - gid: filmStarships
-    from: "Film:"
-    to: "Starship:"
-    label: "starships"
+    from: "Film:"
+    to: "Starship:"
+    label: "starships"
     data:
       edgeTable:
         source: tableServer
         collection: filmStarships
-        fromField: "$.from"
-        toField: "$.to"
+        fromField: "$.from"
+        toField: "$.to"
 
   - gid: starshipFilms
-    to: "Film:"
-    from: "Starship:"
-    label: "films"
+    to: "Film:"
+    from: "Starship:"
+    label: "films"
     data:
       edgeTable:
         source: tableServer
         collection: filmStarships
-        toField: "$.from"
-        fromField: "$.to"
+        toField: "$.from"
+        fromField: "$.to"
 
   - gid: filmPlanets
-    from: "Film:"
-    to: "Planet:"
-    label: "planets"
+    from: "Film:"
+    to: "Planet:"
+    label: "planets"
     data:
       edgeTable:
         source: tableServer
         collection: filmPlanets
-        fromField: "$.from"
-        toField: "$.to"
+        fromField: "$.from"
+        toField: "$.to"
 
   - gid: planetFilms
-    to: "Film:"
-    from: "Planet:"
-    label: "films"
+    to: "Film:"
+    from: "Planet:"
+    label: "films"
     data:
       edgeTable:
         source: tableServer
         collection: filmPlanets
-        toField: "$.from"
-        fromField: "$.to"
+        toField: "$.from"
+        fromField: "$.to"
 
   - gid: filmSpecies
-    from: "Film:"
-    to: "Species:"
-    label: "species"
+    from: "Film:"
+    to: "Species:"
+    label: "species"
     data:
       edgeTable:
         source: tableServer
         collection: filmSpecies
-        fromField: "$.from"
-        toField: "$.to"
+        fromField: "$.from"
+        toField: "$.to"
 
   - gid: speciesFilms
-    to: "Film:"
-    from: "Species:"
-    label: "films"
+    to: "Film:"
+    from: "Species:"
+    label: "films"
     data:
       edgeTable:
         source: tableServer
         collection: filmSpecies
-        toField: "$.from"
-        fromField: "$.to"
+        toField: "$.from"
+        fromField: "$.to"
 
   - gid: filmCharacters
-    from: "Film:"
-    to: "Character:"
+    from: "Film:"
+    to: "Character:"
     label: characters
     data:
       edgeTable:
         source: tableServer
         collection: filmCharacters
-        fromField: "$.from"
-        toField: "$.to"
+        fromField: "$.from"
+        toField: "$.to"
 
   - gid: characterFilms
-    from: "Character:"
-    to: "Film:"
+    from: "Character:"
+    to: "Film:"
     label: films
     data:
       edgeTable:
         source: tableServer
         collection: filmCharacters
-        toField: "$.from"
-        fromField: "$.to"
+        toField: "$.from"
+        fromField: "$.to"
 
   - gid: characterStarships
-    from: "Character:"
-    to: "Starship:"
-    label: "starships"
+    from: "Character:"
+    to: "Starship:"
+    label: "starships"
     data:
       edgeTable:
         source: tableServer
         collection: characterStarships
-        fromField: "$.from"
-        toField: "$.to"
+        fromField: "$.from"
+        toField: "$.to"
 
   - gid: starshipCharacters
-    to: "Character:"
-    from: "Starship:"
-    label: "pilots"
+    to: "Character:"
+    from: "Starship:"
+    label: "pilots"
     data:
       edgeTable:
         source: tableServer
         collection: characterStarships
-        toField: "$.from"
-        fromField: "$.to"
+        toField: "$.from"
+        fromField: "$.to"
 
    
   
    • 
 
diff --git a/docs/docs/gripper/gripper/index.html b/docs/docs/gripper/gripper/index.html
index f16bf587..07196294 100644
--- a/docs/docs/gripper/gripper/index.html
+++ b/docs/docs/gripper/gripper/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
-  
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+  
+  
+  
+  
+  
   
 
   
-  
-  
+  
+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
  • 
           
-          Overview
    • 
           
         
         
  • 
           
-          Download
    • 
           
@@ -75,7 +75,7 @@
           
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+          
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+          
+          
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+            
@@ -270,7 +270,7 @@
           
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@@ -309,7 +309,7 @@
           
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@@ -318,7 +318,7 @@
           
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@@ -365,7 +365,7 @@ 
    GRIP Plugin External Resources
    
 resources as a series of document collections. For example, an SQL gripper would
 plug into an SQL server and provide the tables as a set of collections with each
 every row a document. A gripper is written as a gRPC server.
    
-
    GIPPER Architecture
    
+
    GIPPER Architecture
    
 
   
    • 
 
diff --git a/docs/docs/gripper/index.html b/docs/docs/gripper/index.html
index 2b97232e..6a86b1e5 100644
--- a/docs/docs/gripper/index.html
+++ b/docs/docs/gripper/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
-  
-  
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+  
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+  
   
 
   
-  
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+  
+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
  • 
           
-          Overview
    • 
           
         
         
  • 
           
-          Download
    • 
           
@@ -75,7 +75,7 @@
           
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diff --git a/docs/docs/gripper/proxy/index.html b/docs/docs/gripper/proxy/index.html
index 8c208bcb..bf21f3d7 100644
--- a/docs/docs/gripper/proxy/index.html
+++ b/docs/docs/gripper/proxy/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
-  
-  
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+  
+  
+  
+  
+  
   
 
   
-  
-  
+  
+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
  • 
           
-          Overview
    • 
           
         
         
  • 
           
-          Download
    • 
           
@@ -75,7 +75,7 @@
           
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@@ -362,18 +362,18 @@ 
    GRIPPER proxy
    
 is required to provide a GRPC interface that allows access to collections stored
 in the resource.
    
 
    The required functions include:
    
-
    rpc GetCollections(Empty) returns (stream Collection);
+
    rpc GetCollections(Empty) returns (stream Collection);
 
    GetCollections returns a list of all of the Collections accessible via this server.
    
-
    rpc GetCollectionInfo(Collection) returns (CollectionInfo);
+
    rpc GetCollectionInfo(Collection) returns (CollectionInfo);
 
    GetCollectionInfo provides information, such as the list of indexed fields, in a collection.
    
-
    rpc GetIDs(Collection) returns (stream RowID);
+
    rpc GetIDs(Collection) returns (stream RowID);
 
    GetIDs returns a stream of all of the IDs found in a collection.
    
-
    rpc GetRows(Collection) returns (stream Row);
+
    rpc GetRows(Collection) returns (stream Row);
 
    GetRows returns a stream of all of the rows in a collection.
    
-
    rpc GetRowsByID(stream RowRequest) returns (stream Row);
+
    rpc GetRowsByID(stream RowRequest) returns (stream Row);
 
    GetRowsByID accepts a stream of row requests, each one requesting a single row
-by it's id, and then returns a stream of results.
    
-
    rpc GetRowsByField(FieldRequest) returns (stream Row);
+by it’s id, and then returns a stream of results.
    
+
    rpc GetRowsByField(FieldRequest) returns (stream Row);
 
    GetRowsByField searches a collection, looking for values found in an indexed field.
    
 
   
    • 
diff --git a/docs/docs/index.html b/docs/docs/index.html
index 2cc7dd03..571e5460 100644
--- a/docs/docs/index.html
+++ b/docs/docs/index.html
@@ -1,6 +1,6 @@
 
 
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+
   
   
 
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+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
  • 
           
-          Overview
    • 
           
         
         
  • 
           
-          Download
    • 
           
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@@ -357,7 +357,7 @@
   
    
     
    Overview
    
 
    GRIP stands for GRaph Integration Platform. It provides a graph interface on top of a variety of existing database technologies including:
-MongoDB, Elasticsearch, PostgreSQL, MySQL, MariaDB, Badger, and LevelDB.
    
+MongoDB, PostgreSQL, MySQL, MariaDB, Badger, and LevelDB.
    
 
    Properties of an GRIP graph:
    
 
      
 
    • Both vertices and edges in a graph can have any number of properties associated with them.
      • 
@@ -366,7 +366,7 @@ 
      Overview
      
 
    • Edges in the graph are directed, meaning they have a source and destination.
      • 
 
    
 
    GRIP also provides a query API for the traversing, analyzing and manipulating your graphs. Its syntax is inspired by
-Apache TinkerPop. Learn more here about GRIP and its
+Apache TinkerPop. Learn more here about GRIP and its
 application for querying the Bio Medical Evidence Graph (BMEG).
    
 
    Supported Systems
    
 
    GRIP has three types of drivers:
    
@@ -377,7 +377,7 @@ 
    Supported Systems
    
 is based on Badger.
    • 
 
  • Database Backends : GRIP can utilize a number of different database backends to store graph data.
 In this mode, GRIP formats the database and manages the data. It provides a full Read/Write API, the same
-as the Embedded deployment. Supported systems include Mongo, Portgres SQL and Elastic Search. When deployed
+as the Embedded deployment. Supported systems include Mongo, Portgres SQL. When deployed
 using Mongo, GRIP will translate GripQL queries into Mongo Aggregation Pipeline queries.
    • 
 
  • Plugin Existing Resources : This mode is designed to take advantage of existing data resources, mapping
 them into a graph framework so they can be accessed using GripQL. This mode is currently read-only.
    • 
diff --git a/docs/docs/index.xml b/docs/docs/index.xml
deleted file mode 100644
index 946b0fa3..00000000
--- a/docs/docs/index.xml
+++ /dev/null
@@ -1,371 +0,0 @@
-
-
-  
-    Docs on GRIP
-    https://bmeg.github.io/grip/docs/
-    Recent content in Docs on GRIP
-    Hugo -- gohugo.io
-    en-us
-    
-	
-    
-    
-    
-      
-      https://bmeg.github.io/grip/docs/tutorials/pathway-commons/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/tutorials/pathway-commons/
-      Get Pathway Commons release
-curl -O http://www.pathwaycommons.org/archives/PC2/v10/PathwayCommons10.All.BIOPAX.owl.gz Convert to Property Graph
-grip rdf --dump --gzip pc PathwayCommons10.All.BIOPAX.owl.gz -m &quot;http://pathwaycommons.org/pc2/#=pc:&quot; -m &quot;http://www.biopax.org/release/biopax-level3.owl#=biopax:&quot; 
-    
-    
-    
-      Amazon Purchase Network
-      https://bmeg.github.io/grip/docs/tutorials/amazon/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/tutorials/amazon/
-      Explore Amazon Product Co-Purchasing Network Metadata Download the data
-curl -O http://snap.stanford.edu/data/bigdata/amazon/amazon-meta.txt.gz Convert the data into vertices and edges
-python $GOPATH/src/github.com/bmeg/grip/example/amazon_convert.py amazon-meta.txt.gz amazon.data Create a graph called &lsquo;amazon&rsquo;
-grip create amazon Load the vertices/edges into the graph
-grip load amazon --edge amazon.data.edge --vertex amazon.data.vertex Query the graph
-command line client
-grip query amazon 'O.query().V().out()' python client
-pip install &quot;git+https://github.com/bmeg/grip.git#egg=gripql&amp;subdirectory=gripql/python/&quot; import gripql conn = gripql.Connection(&#34;http://localhost:8201&#34;) g = conn.graph(&#34;amazon&#34;) # Count the Vertices print g.
-    
-    
-    
-      Basic Auth
-      https://bmeg.github.io/grip/docs/security/basic/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/security/basic/
-      Basic Auth By default, an GRIP server allows open access to its API endpoints, but it can be configured to require basic password authentication. To enable this, include users and passwords in your config file:
-Server: BasicAuth: - User: testuser Password: abc123 Make sure to properly protect the configuration file so that it's not readable by everyone:
-$ chmod 600 grip.config.yml To use the password, set the GRIP_USER and GRIP_PASSWORD environment variables:
-    
-    
-    
-      Database Configuration
-      https://bmeg.github.io/grip/docs/databases/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/databases/
-      
-    
-    
-    
-      Developers
-      https://bmeg.github.io/grip/docs/developers/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/developers/
-      
-    
-    
-    
-      drop
-      https://bmeg.github.io/grip/docs/commands/drop/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/commands/drop/
-      grip drop &lt;graph&gt; Deletes a graph.
-    
-    
-    
-      Elasticsearch
-      https://bmeg.github.io/grip/docs/databases/elastic/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/databases/elastic/
-      Elasticsearch GRIP supports storing vertices and edges in Elasticsearch.
-Config:
-Default: elastic Drivers: elastic: Elasticsearch: URL: &#34;http://localhost:9200&#34; DBName: &#34;gripdb&#34; Username: &#34;&#34; Password: &#34;&#34; 
-    
-    
-    
-      Embedded KV Store
-      https://bmeg.github.io/grip/docs/databases/kvstore/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/databases/kvstore/
-      Embedded Key Value Stores GRIP supports storing vertices and edges in a variety of key-value stores including:
- Badger BoltDB LevelDB  Config:
-Default: kv Driver: kv: Badger: grip.db 
-    
-    
-    
-      er
-      https://bmeg.github.io/grip/docs/commands/er/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/commands/er/
-      grip er The External Resource system allows GRIP to plug into existing data systems and integrate them into queriable graphs. The grip er sub command acts as a client to the external resource plugin proxies, issues command and displays the results. This is often useful for debugging external resources before making them part of an actual graph.
-List collections provided by external resource
-grip er list Get info about a collection
-    
-    
-    
-      External Resource Proxies
-      https://bmeg.github.io/grip/docs/gripper/proxy/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/gripper/proxy/
-      GRIPPER GRIPPER proxy With the external resources normalized to a single data model, the graph model describes how to connect the set of collections into a graph model. Each GRIPPER is required to provide a GRPC interface that allows access to collections stored in the resource.
-The required functions include:
-rpc GetCollections(Empty) returns (stream Collection); GetCollections returns a list of all of the Collections accessible via this server.
-rpc GetCollectionInfo(Collection) returns (CollectionInfo); GetCollectionInfo provides information, such as the list of indexed fields, in a collection.
-    
-    
-    
-      Getting Started
-      https://bmeg.github.io/grip/docs/queries/getting_started/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/queries/getting_started/
-      Getting Started GRIP has an API for making graph queries using structured data. Queries are defined using a series of step operations.
-Install the Python Client Available on PyPI.
-pip install gripql Or install the latest development version:
-pip install &quot;git+https://github.com/bmeg/grip.git#subdirectory=gripql/python&quot; Using the Python Client Let's go through the features currently supported in the python client.
-First, import the client and create a connection to an GRIP server:
-import gripql G = gripql.
-    
-    
-    
-      Graph Model
-      https://bmeg.github.io/grip/docs/gripper/graphmodel/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/gripper/graphmodel/
-      GRIPPER GRIP Plugable External Resources
-Graph Model The graph model describes how GRIP will access multiple gripper servers. The mapping of these data resources is done using a graph. The vertices represent how each vertex type will be mapped, and the edges describe how edges will be created. The gid of each vertex represents the prefix domain of all vertices that can be found in that source.
-The sources referenced by the graph are provided to GRIP at run time, each named resource is a different GRIPPER plugin that abstracts an external resource.
-    
-    
-    
-      Graph Schemas
-      https://bmeg.github.io/grip/docs/graphql/graph_schemas/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/graphql/graph_schemas/
-      Graph Schemas Most GRIP based graphs are not required to have a strict schema. However, GraphQL requires a graph schema as part of it's API. To utilize the GraphQL endpoint, there must be a Graph Schema provided to be used by the GRIP engine to determine how to render a GraphQL endpoint. Graph schemas are themselves an instance of a graph. As such, they can be traversed like any other graph.
-    
-    
-    
-      GraphQL
-      https://bmeg.github.io/grip/docs/graphql/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/graphql/
-      
-    
-    
-    
-      GraphQL
-      https://bmeg.github.io/grip/docs/graphql/graphql/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/graphql/graphql/
-      GraphQL GraphQL support is considered Alpha. The code is not stable and the API will likely change. GraphQL access is only supported when using the MongoDB driver
-GRIP supports GraphQL access of the property graphs. Currently this is read-only access to the graph.
-Load built-in example graph Loading the example data and the example schema:
-grip load example-graph See the example graph
-grip dump example-graph --vertex --edge Sample components of the graph to produce a schema and store to a file
-    
-    
-    
-      GRIP Commands
-      https://bmeg.github.io/grip/docs/commands/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/commands/
-      
-    
-    
-    
-      GRIP Plugable External Resources
-      https://bmeg.github.io/grip/docs/gripper/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/gripper/
-      
-    
-    
-    
-      GRIPPER
-      https://bmeg.github.io/grip/docs/databases/gripper/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/databases/gripper/
-      GRIPPER GRIP Plugable External Resources are data systems that GRIP can combine together to create graphs.
-Example:
-Drivers: swapi-driver: Gripper: ConfigFile: ./swapi.yaml Graph: swapi ConfigFile - Path to GRIPPER graph map
-Graph - Name of the graph for the mapped external resources.
-    
-    
-    
-      Intro
-      https://bmeg.github.io/grip/docs/gripper/gripper/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/gripper/gripper/
-      GRIPPER GRIP Plugin External Resources GRIP Plugin External Resources (GRIPPERs) are GRIP drivers that take external resources and allow GRIP to access them are part of a unified graph. To integrate new resources into the graph, you first deploy griper proxies that plug into the external resources. They are unique and configured to access specific resources. These provide a view into external resources as a series of document collections. For example, an SQL gripper would plug into an SQL server and provide the tables as a set of collections with each every row a document.
-    
-    
-    
-      Jobs API
-      https://bmeg.github.io/grip/docs/queries/jobs_api/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/queries/jobs_api/
-      Jobs API Not all queries return instantaneously, additionally some queries elements are used repeatedly. The query Jobs API provides a mechanism to submit graph traversals that will be evaluated asynchronously and can be retrieved at a later time.
-Submitting a job job = G.query().V().hasLabel(&quot;Planet&quot;).out().submit() Getting job status jinfo = G.getJob(job[&quot;id&quot;]) Example job info:
-{ &#34;id&#34;: &#34;job-326392951&#34;, &#34;graph&#34;: &#34;test_graph_qd7rs7&#34;, &#34;state&#34;: &#34;COMPLETE&#34;, &#34;count&#34;: &#34;12&#34;, &#34;query&#34;: [{&#34;v&#34;: []}, {&#34;hasLabel&#34;: [&#34;Planet&#34;]}, {&#34;as&#34;: &#34;a&#34;}, {&#34;out&#34;: []}], &#34;timestamp&#34;: &#34;2021-03-30T23:12:01-07:00&#34; } Reading job results for row in G.
-    
-    
-    
-      list
-      https://bmeg.github.io/grip/docs/commands/list/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/commands/list/
-      grip list graphs grip list graphs 
-    
-    
-    
-      MongoDB
-      https://bmeg.github.io/grip/docs/databases/mongo/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/databases/mongo/
-      MongoDB GRIP supports storing vertices and edges in MongoDB.
-Config:
-Default: mongo Drivers: mongo: MongoDB: URL: &#34;mongodb://localhost:27000&#34; DBName: &#34;gripdb&#34; Username: &#34;&#34; Password: &#34;&#34; UseCorePipeline: False BatchSize: 0 UseCorePipeline - Default is to use Mongo pipeline API to do graph traversals. By enabling UseCorePipeline, GRIP will do the traversal logic itself, only using Mongo for graph storage.
-BatchSize - For core engine operations, GRIP dispatches element lookups in batches to minimize query overhead.
-    
-    
-    
-      mongoload
-      https://bmeg.github.io/grip/docs/commands/mongoload/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/commands/mongoload/
-      grip mongoload 
-    
-    
-    
-      Operations
-      https://bmeg.github.io/grip/docs/queries/operations/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/queries/operations/
-      Start a Traversal .V([ids]) Start query from Vertex
-G.query().V() Returns all vertices in graph
-G.query().V([&#34;vertex1]&#34;) Returns:
-{&#34;gid&#34; : &#34;vertex1&#34;, &#34;label&#34;:&#34;TestVertex&#34;, &#34;data&#34;:{}} .E([ids]) Start query from Edge
-G.query().E() Returns all edges in graph
-G.query().E([&#34;edge1&#34;]) Returns:
-{&#34;gid&#34; : &#34;edge1&#34;, &#34;label&#34;:&#34;TestEdge&#34;, From: &#34;vertex1&#34;, To: &#34;vertex2&#34;, data&#34;:{}} Traverse the graph .in_(), inV() Following incoming edges. Optional argument is the edge label (or list of labels) that should be followed. If no argument is provided, all incoming edges.
-    
-    
-    
-      PostgreSQL
-      https://bmeg.github.io/grip/docs/databases/psql/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/databases/psql/
-      PostgreSQL GRIP supports storing vertices and edges in PostgreSQL.
-Config:
-Default: psql Drivers: psql: PSQL: Host: localhost Port: 15432 User: &#34;&#34; Password: &#34;&#34; DBName: &#34;grip&#34; SSLMode: disable 
-    
-    
-    
-      query
-      https://bmeg.github.io/grip/docs/commands/query/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/commands/query/
-      grip query &lt;graph&gt; &lt;query&gt; Run a query on a graph.
-    
-    
-    
-      Query a Graph
-      https://bmeg.github.io/grip/docs/queries/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/queries/
-      
-    
-    
-    
-      Referencing Fields
-      https://bmeg.github.io/grip/docs/queries/jsonpath/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/queries/jsonpath/
-      Referencing Vertex/Edge Properties Several operations (where, fields, render, etc.) reference properties of the vertices/edges during the traversal. GRIP uses a variation on JSONPath syntax as described in http://goessner.net/articles/ to reference fields during traversals.
-The following query:
-O.query().V([&quot;ENSG00000012048&quot;]).as_(&quot;gene&quot;).out(&quot;variant&quot;) Starts at vertex ENSG00000012048 and marks as gene:
-{ &quot;gid&quot;: &quot;ENSG00000012048&quot;, &quot;label&quot;: &quot;gene&quot;, &quot;data&quot;: { &quot;symbol&quot;: { &quot;ensembl&quot;: &quot;ENSG00000012048&quot;, &quot;hgnc&quot;: 1100, &quot;entrez&quot;: 672, &quot;hugo&quot;: &quot;BRCA1&quot; } &quot;transcipts&quot;: [&quot;ENST00000471181.7&quot;, &quot;ENST00000357654.8&quot;, &quot;ENST00000493795.5&quot;] } } as &ldquo;gene&rdquo; and traverses the graph to:
-    
-    
-    
-      Security
-      https://bmeg.github.io/grip/docs/security/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/security/
-      
-    
-    
-    
-      server
-      https://bmeg.github.io/grip/docs/commands/server/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/commands/server/
-      grip server The server command starts up a graph server and waits for incoming requests.
-Default Configuration If invoked with no arguments or config files, GRIP will start up in embedded mode, using a Badger based graph driver.
-Networking By default the GRIP server operates on 2 ports, 8201 is the HTTP based interface. Port 8202 is a GRPC based interface. Python, R and Javascript clients are designed to connect to the HTTP interface on 8201.
-    
-    
-    
-      SQL
-      https://bmeg.github.io/grip/docs/databases/sql/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/databases/sql/
-      Connect to an existing SQL database Note: This driver is being superseded by the GRIPPER engine
-GRIP supports modeling an existing SQL database as a graph. GRIP has been tested against PostgreSQL, but should work with MySQL (4.1+) and MariaDB.
-Since GRIP uses Go's database/sql package, we could (in thoery) support any SQL databases listed on: https://github.com/golang/go/wiki/SQLDrivers. Open an issue if you would like to request support for your favorite SQL database.
-    
-    
-    
-      TCGA RNA Expression
-      https://bmeg.github.io/grip/docs/tutorials/tcga-rna/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/tutorials/tcga-rna/
-      Explore TCGA RNA Expression Data Create the graph
-grip create tcga-rna Get the data
-curl -O http://download.cbioportal.org/gbm_tcga_pub2013.tar.gz tar xvzf gbm_tcga_pub2013.tar.gz Load clinical data
-./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_clinical.txt --row-label 'Donor' Load RNASeq data
-./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_RNA_Seq_v2_expression_median.txt -t --index-col 1 --row-label RNASeq --row-prefix &quot;RNA:&quot; --exclude RNA:Hugo_Symbol Connect RNASeq data to Clinical data
-./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_RNA_Seq_v2_expression_median.txt -t --index-col 1 --no-vertex --edge 'RNA:{_gid}' rna Connect Clinical data to subtypes
-./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_clinical.txt --no-vertex -e &quot;{EXPRESSION_SUBTYPE}&quot; subtype --dst-vertex &quot;{EXPRESSION_SUBTYPE}&quot; Subtype Load Hugo Symbol to EntrezID translation table from RNA matrix annotations
-    
-    
-    
-      Tutorials
-      https://bmeg.github.io/grip/docs/tutorials/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/tutorials/
-      
-    
-    
-  
-
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-          Overview
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    Getting Started
    
-
    GRIP has an API for making graph queries using structured data. Queries are defined using a series of step operations.
    
+
    GRIP has an API for making graph queries using structured data. Queries are defined using a series of step operations.
    
 
    Install the Python Client
    
 
    Available on PyPI.
    
-
    pip install gripql
+
    pip install gripql
 
    Or install the latest development version:
    
-
    pip install "git+https://github.com/bmeg/grip.git#subdirectory=gripql/python"
+
    pip install "git+https://github.com/bmeg/grip.git#subdirectory=gripql/python"
 
    Using the Python Client
    
-
    Let's go through the features currently supported in the python client.
    
+
    Let’s go through the features currently supported in the python client.
    
 
    First, import the client and create a connection to an GRIP server:
    
-
    import gripql
-G = gripql.Connection("https://bmeg.io").graph("bmeg")
-
    Some GRIP servers may require authorizaiton to access its API endpoints. The client can be configured to pass
+
    import gripql
+G = gripql.Connection("https://bmeg.io").graph("bmeg")
+
    Some GRIP servers may require authorizaiton to access its API endpoints. The client can be configured to pass
 authorization headers in its requests.
    
-
    import gripql
-
-# Basic Auth Header - {'Authorization': 'Basic dGVzdDpwYXNzd29yZA=='}
-G = gripql.Connection("https://bmeg.io", user="test", password="password").graph("bmeg")
-#
-
-# Bearer Token - {'Authorization': 'Bearer iamnotarealtoken'}
-G = gripql.Connection("https://bmeg.io", token="iamnotarealtoken").graph("bmeg")
-
-# OAuth2 / Custom - {"OauthEmail": "fake.user@gmail.com", "OauthAccessToken": "iamnotarealtoken", "OauthExpires": 1551985931}
-G = gripql.Connection("https://bmeg.io",  credential_file="~/.grip_token.json").graph("bmeg")
-
    Now that we have a connection to a graph instance, we can use this to make all of our queries.
    
-
    One of the first things you probably want to do is find some vertex out of all of the vertexes available in the system. In order to do this, we need to know something about the vertex we are looking for. To start, let's see if we can find a specific gene:
    
-
    result = G.query().V().hasLabel("Gene").has(gripql.eq("symbol", "TP53")).execute()
-print(result)
-
    A couple things about this first and simplest query. We start with O, our grip client instance connected to the “bmeg” graph, and create a new query with .query(). This query is now being constructed. You can chain along as many operations as you want, and nothing will actually get sent to the server until you print the results.
    
+
    import gripql
+
+# Basic Auth Header - {'Authorization': 'Basic dGVzdDpwYXNzd29yZA=='}
+G = gripql.Connection("https://bmeg.io", user="test", password="password").graph("bmeg")
+#
+
+# Bearer Token - {'Authorization': 'Bearer iamnotarealtoken'}
+G = gripql.Connection("https://bmeg.io", token="iamnotarealtoken").graph("bmeg")
+
+# OAuth2 / Custom - {"OauthEmail": "fake.user@gmail.com", "OauthAccessToken": "iamnotarealtoken", "OauthExpires": 1551985931}
+G = gripql.Connection("https://bmeg.io",  credential_file="~/.grip_token.json").graph("bmeg")
+
    Now that we have a connection to a graph instance, we can use this to make all of our queries.
    
+
    One of the first things you probably want to do is find some vertex out of all of the vertexes available in the system. In order to do this, we need to know something about the vertex we are looking for. To start, let’s see if we can find a specific gene:
    
+
    result = G.query().V().hasLabel("Gene").has(gripql.eq("symbol", "TP53")).execute()
+print(result)
+
    A couple things about this first and simplest query. We start with O, our grip client instance connected to the “bmeg” graph, and create a new query with .query(). This query is now being constructed. You can chain along as many operations as you want, and nothing will actually get sent to the server until you print the results.
    
 
    Once we make this query, we get a result:
    
-
    [
-  {u'gid': u'ENSG00000141510',
-  u'data': {
-    u'end': 7687550,
-    u'description': u'tumor protein p53 [Source:HGNC Symbol%3BAcc:HGNC:11998]',
-    u'symbol': u'TP53',
-    u'start': 7661779,
-    u'seqId': u'17',
-    u'strand': u'-',
-    u'id': u'ENSG00000141510',
-    u'chromosome': u'17'
-  },
-  u'label': u'Gene'})
-]
-
    This represents the vertex we queried for above. All vertexes in the system will have a similar structure, basically:
    
+
    [
+  {u'gid': u'ENSG00000141510',
+  u'data': {
+    u'end': 7687550,
+    u'description': u'tumor protein p53 [Source:HGNC Symbol%3BAcc:HGNC:11998]',
+    u'symbol': u'TP53',
+    u'start': 7661779,
+    u'seqId': u'17',
+    u'strand': u'-',
+    u'id': u'ENSG00000141510',
+    u'chromosome': u'17'
+  },
+  u'label': u'Gene'})
+]
+
    This represents the vertex we queried for above. All vertexes in the system will have a similar structure, basically:
    
 
      
 
    • gid: This represents the global identifier for this vertex. In order to draw edges between different vertexes from different data sets we need an identifier that can be constructed from available data. Often, the gid will be the field that you query on as a starting point for a traversal.
      • 
 
    • label: The label represents the type of the vertex. All vertexes with a given label will share many property keys and edge labels, and form a logical group within the system.
      • 
 
    • data: This is where all the data goes. data can be an arbitrary map, and these properties can be referenced during traversals.
      • 
 
    
 
    The data on a query result can be accessed as properties on the result object; for example result[0].data.symbol would return:
    
-
    u'TP53'
-
    You can also do a has query with a list of items using gripql.within([...]) (other conditions exist, see the Conditions section below):
    
-
    result = G.query().V().hasLabel("Gene").has(gripql.within("symbol", ["TP53", "BRCA1"])).render({"gid": "_gid", "symbol":"symbol"}).execute()
-print(result)
-
    This returns both Gene vertexes:
    
-
    [
-  {u'symbol': u'TP53', u'gid': u'ENSG00000141510'},
-  {u'symbol': u'BRCA1', u'gid': u'ENSG00000012048'}
+
    u'TP53'
+
    You can also do a has query with a list of items using gripql.within([...]) (other conditions exist, see the Conditions section below):
    
+
    result = G.query().V().hasLabel("Gene").has(gripql.within("symbol", ["TP53", "BRCA1"])).render({"gid": "_gid", "symbol":"symbol"}).execute()
+print(result)
+
    This returns both Gene vertexes:
    
+
    [
+  {u'symbol': u'TP53', u'gid': u'ENSG00000141510'},
+  {u'symbol': u'BRCA1', u'gid': u'ENSG00000012048'}
 ]
-
    Once you are on a vertex, you can travel through that vertex's edges to find the vertexes it is connected to. Sometimes you don't even need to go all the way to the next vertex, the information on the edge between them may be sufficient.
    
+
    Once you are on a vertex, you can travel through that vertex’s edges to find the vertexes it is connected to. Sometimes you don’t even need to go all the way to the next vertex, the information on the edge between them may be sufficient.
    
 
    Edges in the graph are directional, so there are both incoming and outgoing edges from each vertex, leading to other vertexes in the graph. Edges also have a label, which distinguishes the kind of connections different vertexes can have with one another.
    
 
    Starting with gene TP53, and see what kind of other vertexes it is connected to.
    
-
    result = G.query().V().hasLabel("Gene").has(gripql.eq("symbol", "TP53")).in_("TranscriptFor")render({"gid": "_gid", "label":"_label"}).execute()
-print(result)
-
    Here we have introduced a couple of new steps. The first is .in_(). This starts from wherever you are in the graph at the moment and travels out along all the incoming edges.
+
    result = G.query().V().hasLabel("Gene").has(gripql.eq("symbol", "TP53")).in_("TranscriptFor")render({"gid": "_gid", "label":"_label"}).execute()
+print(result)
+
    Here we have introduced a couple of new steps. The first is .in_(). This starts from wherever you are in the graph at the moment and travels out along all the incoming edges.
 Additionally, we have provided TranscriptFor as an argument to .in_(). This limits the returned vertices to only those connected to the Gene  verticies by edges labeled TranscriptFor.
    
-
    [
-  {u'label': u'Transcript', u'gid': u'ENST00000413465'},
-  {u'label': u'Transcript', u'gid': u'ENST00000604348'},
+
    [
+  {u'label': u'Transcript', u'gid': u'ENST00000413465'},
+  {u'label': u'Transcript', u'gid': u'ENST00000604348'},
   ...
 ]
-
    View a list of all available query operations here.
    
+
    View a list of all available query operations here.
    
 
   
    
 
diff --git a/docs/docs/queries/graph_schemas/index.html b/docs/docs/queries/graph_schemas/index.html
deleted file mode 100644
index 769af6f1..00000000
--- a/docs/docs/queries/graph_schemas/index.html
+++ /dev/null
@@ -1,330 +0,0 @@
-
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-  Graph Schemas · GRIP
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    Graph Schemas
    
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    Graph schemas are themselves an instance of a graph. As such, they can be traversed like any other graph.
-The schemas are automatically added to the database following the naming pattern {graph-name}__schema__.
    
-
-
    Get the schema of a graph
    
-
-
    The schema of a graph can be accessed via a GET request to /v1/graph/{graph-name}/schema.
    
-
-
    Alternatively, you can use the grip CLI: grip schema get {graph-name}.
    
-
-
    Describing graph schemas
    
-
-
    There are several methods for desribing the schema of a graph.
    
-
-
      
-
    • Provide the schema (as a YAML file) to the server at runtime. grip server --schema {schema-file}
      • 
-
    • POST the schema /v1/graph/{graph-name}/schema via curl or use the CLI grip schema post --yaml {file} --json {file}.
      • 
-
    • Configure Grip to build the schema by sampling the data in each graph.
      • 
-
    
-
-
    Server:
-  # Should the server periodically build the graph schemas?
-  AutoBuildSchemas: true
-  # How often the server should rebuild the graph schemas. Set to 0 to turn off
-  SchemaRefreshInterval: "24h"
-  # How many vertices/edges to inspect to infer the schema
-  SchemaInspectN: 500
-  # Strategy to use for selecting the vertices/edges to inspect.
-  # Random if True; first N otherwise
-  SchemaRandomSample: true
-
    
-
-
    Example schema
    
-
-
     graph: example-graph
-
- edges:
-- data: {}
-  from: Human
-  gid: (Human)--starship->(Starship)
-  label: starship
-  to: Starship
-- data: {}
-  from: Human
-  gid: (Human)--friend->(Human)
-  label: friend
-  to: Human
-- data: {}
-  from: Human
-  gid: (Human)--friend->(Droid)
-  label: friend
-  to: Droid
-- data: {}
-  from: Human
-  gid: (Human)--appearsIn->(Movie)
-  label: appearsIn
-  to: Movie
-
-vertices:
-- data:
-    name: STRING
-  gid: Movie
-  label: Movie
-- data:
-    length: NUMERIC
-    name: STRING
-  gid: Starship
-  label: Starship
-- data:
-    name: STRING
-    primaryFunction: STRING
-  gid: Droid
-  label: Droid
-- data:
-    height: NUMERIC
-    homePlanet: STRING
-    mass: NUMERIC
-    name: STRING
-  gid: Human
-  label: Human
-
    
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-  
    
-
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diff --git a/docs/docs/queries/graphql/index.html b/docs/docs/queries/graphql/index.html
deleted file mode 100644
index ef14b88d..00000000
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+++ /dev/null
@@ -1,305 +0,0 @@
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-  GraphQL · GRIP
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    GraphQL
    
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    GRIP supports GraphQL access of the property graphs. Currently this is read-only access to the graph.
    
-
    GraphQL access is only supported when using the MongoDB driver
    
-
    Load built-in example graph
    
-
    Loading the example data and the example schema:
    
-
    grip load example-graph
-
    See the example graph
    
-
    grip dump example-graph --vertex --edge
-
    See the example graph schema
    
-
    grip schema example-graph
-
    Example queries
    
-
    Get Types:
    
-
    curl -X POST -H "Content-Type:application/graphql" -d '{__schema{types{name}}}' http://localhost:8201/graphql/example-graph
-
    Get Info about Human object
    
-
    curl -X POST -H "Content-Type:application/graphql" -d '{__type(name:"Human"){fields{name}}}' http://localhost:8201/graphql/example-graph
-
    Get List of all Human ids
    
-
    curl -X POST -H "Content-Type:application/graphql" -d 'query {Human{id}}' http://localhost:8201/graphql/example-graph
-
    Get Human 1000 and list their friends
    
-
    curl -X POST -H "Content-Type:application/graphql" -d 'query {Human(id:"1000"){name,friend_to_Human{name}}}' http://localhost:8201/graphql/example-graph
-
    
-  
    
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diff --git a/docs/docs/queries/index.html b/docs/docs/queries/index.html
index 5b64d24a..7dfba135 100644
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diff --git a/docs/docs/queries/jobs_api/index.html b/docs/docs/queries/jobs_api/index.html
index 6d0d17f6..641335c4 100644
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    Jobs API
    
 repeatedly. The query Jobs API provides a mechanism to submit graph traversals
 that will be evaluated asynchronously and can be retrieved at a later time.
    
 
    Submitting a job
    
-
    job = G.query().V().hasLabel("Planet").out().submit()
+
    job = G.query().V().hasLabel("Planet").out().submit()
 
    Getting job status
    
-
    jinfo = G.getJob(job["id"])
+
    jinfo = G.getJob(job["id"])
 
    Example job info:
    
-
    {
-  "id": "job-326392951",
-  "graph": "test_graph_qd7rs7",
-  "state": "COMPLETE",
-  "count": "12",
-  "query": [{"v": []}, {"hasLabel": ["Planet"]}, {"as": "a"}, {"out": []}],
-  "timestamp": "2021-03-30T23:12:01-07:00"
-}
-
    Reading job results
    
-
    for row in G.readJob(job["id"]):
+
    {
+  "id": "job-326392951",
+  "graph": "test_graph_qd7rs7",
+  "state": "COMPLETE",
+  "count": "12",
+  "query": [{"v": []}, {"hasLabel": ["Planet"]}, {"as": "a"}, {"out": []}],
+  "timestamp": "2021-03-30T23:12:01-07:00"
+}
+
    Reading job results
    
+
    for row in G.readJob(job["id"]):
    print(row)
 
    Search for jobs
    
 
    Find jobs that match the prefix of the current request (example should find job from G.query().V().hasLabel(“Planet”).out())
    
-
    jobs = G.query().V().hasLabel("Planet").out().out().count().searchJobs()
+
    jobs = G.query().V().hasLabel("Planet").out().out().count().searchJobs()
 
    If there are multiple jobs that match the prefix of the search, all of them will be returned. It will be a client side
 job to decide which of the jobs to use as a starting point. This can either be the job with the longest matching prefix, or
 the most recent job. Note, that if the underlying database has changed since the job was run, adding additional steps to the
 traversal may produce inaccurate results.
    
 
    Once job has been selected from the returned list you can use these existing results and continue the traversal.
    
-
    for res in G.resume(job["id"]).out().count():
+
    for res in G.resume(job["id"]).out().count():
     print(res)
 
    
   
    • 
diff --git a/docs/docs/queries/jsonpath/index.html b/docs/docs/queries/jsonpath/index.html
index 444e0389..fc63cf34 100644
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    Referencing Vertex/Edge PropertiesSeveral operations (where, fields, render, etc.) reference properties of the vertices/edges during the traversal.
 GRIP uses a variation on JSONPath syntax as described in http://goessner.net/articles/ to reference fields during traversals.
    
 
    The following query:
    
-
    O.query().V(["ENSG00000012048"]).as_("gene").out("variant")
+
    O.query().V(["ENSG00000012048"]).as_("gene").out("variant")
 
    Starts at vertex ENSG00000012048 and marks as gene:
    
-
    {
-  "gid": "ENSG00000012048",
-  "label": "gene",
-  "data": {
-    "symbol": {
-      "ensembl": "ENSG00000012048",
-      "hgnc": 1100,
-      "entrez": 672,
-      "hugo": "BRCA1"
+
    {
+  "gid": "ENSG00000012048",
+  "label": "gene",
+  "data": {
+    "symbol": {
+      "ensembl": "ENSG00000012048",
+      "hgnc": 1100,
+      "entrez": 672,
+      "hugo": "BRCA1"
     }
-    "transcipts": ["ENST00000471181.7", "ENST00000357654.8", "ENST00000493795.5"]
+    "transcipts": ["ENST00000471181.7", "ENST00000357654.8", "ENST00000493795.5"]
   }
 }
 
    as “gene” and traverses the graph to:
    
-
    {
-  "gid": "NM_007294.3:c.4963_4981delTGGCCTGACCCCAGAAG",
-  "label": "variant",
-  "data": {
-    "type": "deletion"
-    "publications": [
+
    {
+  "gid": "NM_007294.3:c.4963_4981delTGGCCTGACCCCAGAAG",
+  "label": "variant",
+  "data": {
+    "type": "deletion"
+    "publications": [
       {
-        "pmid": 29480828,
-        "doi": "10.1097/MD.0000000000009380"
+        "pmid": 29480828,
+        "doi": "10.1097/MD.0000000000009380"
       },
       {
-        "pmid": 23666017,
-        "doi": "10.1097/IGC.0b013e31829527bd"
+        "pmid": 23666017,
+        "doi": "10.1097/IGC.0b013e31829527bd"
       }
     ]
   }
 }
 
    Below is a table of field and the values they would reference in subsequent traversal operations.
    
 
-
-
-
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+      
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+      
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+          
+      
+      
+          
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+      
+      
+          
+          
+      
+      
+          
+          
+      
+  
    jsonpathresult
    _gid“NM_007294.3:c.4963_4981delTGGCCTGACCCCAGAAG”
    _label“variant”
    _data.type“deletion”
    type“deletion”
    publications[0].pmid29480828
    publications[:].pmid[29480828, 23666017]
    publications.pmid[29480828, 23666017]
    $gene.symbol.hugo“BRCA1”
    $gene.transcripts[0]“ENST00000471181.7”
    jsonpathresult
    _gid“NM_007294.3:c.4963_4981delTGGCCTGACCCCAGAAG”
    _label“variant”
    _data.type“deletion”
    type“deletion”
    publications[0].pmid29480828
    publications[:].pmid[29480828, 23666017]
    publications.pmid[29480828, 23666017]
    $gene.symbol.hugo“BRCA1”
    $gene.transcripts[0]“ENST00000471181.7”
    
 
    
 
    Usage Example:
    
-
    O.query().V(["ENSG00000012048"]).as_("gene").out("variant").render({"variant_id": "_gid", "variant_type": "type", "gene_id": "$gene._gid"})
+
    O.query().V(["ENSG00000012048"]).as_("gene").out("variant").render({"variant_id": "_gid", "variant_type": "type", "gene_id": "$gene._gid"})
 
    returns
    
-
    {
-  "variant_id": "NM_007294.3:c.4963_4981delTGGCCTGACCCCAGAAG",
-  "variant_type": "deletion",
-  "gene_id": "ENSG00000012048"
+
    {
+  "variant_id": "NM_007294.3:c.4963_4981delTGGCCTGACCCCAGAAG",
+  "variant_type": "deletion",
+  "gene_id": "ENSG00000012048"
 }
 
    
   
    • 
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index 500d7c54..ca621f0c 100644
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-          Overview
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-          Download
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    Start a Traversal
    
 
    .V([ids])
    
 
    Start query from Vertex
    
-
    G.query().V()
-
    Returns all vertices in graph
    
-
    G.query().V(["vertex1]")
-
    Returns:
    
-
    {"gid" : "vertex1", "label":"TestVertex", "data":{}}
-
    .E([ids])
    
+
    G.query().V()
+
    Returns all vertices in graph
    
+
    G.query().V(["vertex1"])
+
    Returns:
    
+
    {"gid" : "vertex1", "label":"TestVertex", "data":{}}
+
    .E([ids])
    
 
    Start query from Edge
    
-
    G.query().E()
-
    Returns all edges in graph
    
-
    G.query().E(["edge1"])
-
    Returns:
    
-
    {"gid" : "edge1", "label":"TestEdge", From: "vertex1", To: "vertex2", data":{}}
-
    Traverse the graph
    
-
    .in_(), inV()
    
+
    G.query().E()
+
    Returns all edges in graph
    
+
    G.query().E(["edge1"])
+
    Returns:
    
+
    {"gid" : "edge1", "label":"TestEdge", "from": "vertex1", "to": "vertex2", "data":{}}
+
    Traverse the graph
    
+
    .in_(), inV()
    
 
    Following incoming edges. Optional argument is the edge label (or list of labels) that should be followed. If no argument is provided, all incoming edges.
    
 
    .out(), .outV()
    
 
    Following outgoing edges. Optional argument is the edge label (or list of labels) that should be followed. If no argument is provided, all outgoing edges.
    
@@ -386,101 +386,115 @@ 
    .bothE()
    
 
    Filtering
    
 
    .has()
    
 
    Filter elements using conditional statements
    
-
    G.query().V().has(gripql.eq("_label", "Gene")).has(gripql.eq("symbol", "TP53"))
-
    Conditions
    
+
    G.query().V().has(gripql.eq("_label", "Gene")).has(gripql.eq("symbol", "TP53"))
+
    Conditions
    
 
    Conditions are arguments to .has() that define selection conditions
    
 
    gripql.eq(variable, value)
    
 
    Returns rows where variable == value
    
-
    .has(gripql.eq("symbol", "TP53"))
-
    gripql.neq(variable, value)
    
+
    .has(gripql.eq("symbol", "TP53"))
+
    gripql.neq(variable, value)
    
 
    Returns rows where variable != value
    
-
    .has(gripql.neq("symbol", "TP53"))
-
    gripql.gt(variable, value)
    
+
    .has(gripql.neq("symbol", "TP53"))
+
    gripql.gt(variable, value)
    
 
    Returns rows where variable > value
    
-
    .has(gripql.gt("age", 45))
-
    gripql.lt(variable, value)
    
+
    .has(gripql.gt("age", 45))
+
    gripql.lt(variable, value)
    
 
    Returns rows where variable < value
    
-
    .has(gripql.lt("age", 45))
-
    gripql.gte(variable, value)
    
+
    .has(gripql.lt("age", 45))
+
    gripql.gte(variable, value)
    
 
    Returns rows where variable >= value
    
-
    .has(gripql.gte("age", 45))
-
    gripql.lte(variable, value)
    
+
    .has(gripql.gte("age", 45))
+
    gripql.lte(variable, value)
    
 
    Returns rows where variable <= value
    
-
    .has(gripql.lte("age", 45))
-
    gripql.inside(variable, [lower_bound, upper_bound])
    
+
    .has(gripql.lte("age", 45))
+
    gripql.inside(variable, [lower_bound, upper_bound])
    
 
    Returns rows where variable > lower_bound && variable < upper_bound
    
-
    .has(gripql.inside("age", [30, 45]))
-
    gripql.outside(variable, [lower_bound, upper_bound])
    
+
    .has(gripql.inside("age", [30, 45]))
+
    gripql.outside(variable, [lower_bound, upper_bound])
    
 
    Returns rows where variable < lower_bound || variable > upper_bound
    
-
    .has(gripql.outside("age", [30, 45]))
-
    gripql.between(variable, [lower_bound, upper_bound])
    
+
    .has(gripql.outside("age", [30, 45]))
+
    gripql.between(variable, [lower_bound, upper_bound])
    
 
    Returns rows where variable >= lower_bound && variable < upper_bound
    
-
    .has(gripql.between("age", [30, 45]))
-
    gripql.within(variable, value)
    
+
    .has(gripql.between("age", [30, 45]))
+
    gripql.within(variable, value)
    
 
    Returns rows where variable is within provided values
    
-
    .has(gripql.within("symbol", ["TP53", "BRCA1"]))
-
    gripql.without(variable, value)
    
+
    .has(gripql.within("symbol", ["TP53", "BRCA1"]))
+
    gripql.without(variable, value)
    
 
    Returns rows where variable is not within provided values
    
-
    .has(gripql.within("symbol", ["TP53", "BRCA1"]))
-
    gripql.contains(variable, value)
    
+
    .has(gripql.within("symbol", ["TP53", "BRCA1"]))
+
    gripql.contains(variable, value)
    
 
    Returns rows where variable contains value
    
-
    .has(gripql.in_("groups", "group1"))
-
    Returns:
    
-
    {"data" : {"groups" : ["group1", "group2"]}}
-
    gripql.and_([conditions])
    
-
    .has(gripql.and_( [gripql.lte("age", 45), gripql.gte("age", 35)] ))
-
    gripql.or_([conditions])
    
-
    .has(gripql.or_( [...] ))
-
    gripql.not_(condition)
    
-
    .has(gripql.not_( [...] ))
-
    Output
    
-
    .as_(name)
    
+
    .has(gripql.in_("groups", "group1"))
+
    Returns:
    
+
    {"data" : {"groups" : ["group1", "group2"]}}
+
    gripql.and_([conditions])
    
+
    .has(gripql.and_( [gripql.lte("age", 45), gripql.gte("age", 35)] ))
+
    gripql.or_([conditions])
    
+
    .has(gripql.or_( [...] ))
+
    gripql.not_(condition)
    
+
    .has(gripql.not_( [...] ))
+
    Output
    
+
    .as_(name)
    
 
    Store current row for future reference
    
-
    G.query().V().as_("a").out().as_("b")
-
    .select([names])
    
-
    Output previously marked elements
    
-
    G.query().V().mark("a").out().mark("b").select(["a", "b"])
-
    .limit(count)
    
+
    G.query().V().as_("a").out().as_("b")
+
    .select([names])
    
+
    Move traveler to previously marked position
    
+
    G.query().V().mark("a").out().mark("b").select("a")
+
    .limit(count)
    
 
    Limit number of total output rows
    
-
    G.query().V().limit(5)
-
    .skip(count)
    
+
    G.query().V().limit(5)
+
    .skip(count)
    
 
    Start return after offset
    
-
    G.query().V().skip(5).limit(5)
-
    .range(start, stop)
    
+
    G.query().V().skip(5).limit(5)
+
    .range(start, stop)
    
 
    As results are iterated return objects starting with lower index As traversers propagate through the traversal, it is possible to only allow a certain number of them to pass through with range()-step (filter). When the low-end of the range is not met, objects are continued to be iterated. When within the low (inclusive) and high (exclusive) range, traversers are emitted. When above the high range, the traversal breaks out of iteration. Finally, the use of -1 on the high range will emit remaining traversers after the low range begins.
    
-
    G.query().V().range(5, 15)
-
    .fields([fields])
    
+
    G.query().V().range(5, 15)
+
    .fields([fields])
    
 
    Select which vertex/edge fields to return or exlucde. Operation with no arguments exlcudes all properties.
 “gid”, “label”, “from” and “to” are included by default.
    
-
    O.query().V("vertex1").fields("symbol")     # include only symbol property
-O.query().V("vertex1").fields("-symbol")    # exclude symbol property
-O.query().V("vertex1").fields()             # exclude all properties
-
    .render(template)
    
+
    O.query().V("vertex1").fields("symbol")     # include only symbol property
+O.query().V("vertex1").fields("-symbol")    # exclude symbol property
+O.query().V("vertex1").fields()             # exclude all properties
+
    .render(template)
    
 
    Render current selection into arbitrary data structure
    
-
    G.query().V("vertex1").render()
-
    .aggregate([aggregations])
    
+
    G.query().V("vertex1").render()
+
    .aggregate([aggregations])
    
 
    Aggregate fields in the returned edges/vertices.
    
 
    Aggregation Types
    
 
    .gripql.term(name, field, size)
    
 
    Return top n terms and their counts for a field.
    
-
    G.query().V().hasLabel("Person").aggregate(gripql.term("top-names", "name", 10))
+
    G.query().V().hasLabel("Person").aggregate(gripql.term("top-names", "name", 10))
 
    Counts name occurences across Person vertices and returns the 10 most frequent name values.
    
 
    .gripql.histogram(name, field, interval)
    
 
    Return binned counts for a field.
    
-
    G.query().V().hasLabel("Person").aggregate(gripql.histogram("age-hist", "age", 5))
+
    G.query().V().hasLabel("Person").aggregate(gripql.histogram("age-hist", "age", 5))
 
    Creates a histogram of age values with bins of width 5 across Person vertices.
    
 
    .gripql.percentile(name, field, percents=[])
    
 
    Return percentiles for a field.
    
-
    G.query().V().hasLabel("Person").aggregate(gripql.percentile("age-percentiles", "age", [25,50,75]))
+
    G.query().V().hasLabel("Person").aggregate(gripql.percentile("age-percentiles", "age", [25,50,75]))
 
    Calculates the 25th, 50th, and 75th percentiles for age values across Person vertices.
    
-
    .gripql.gripql.field(“fields”, “$._data”))
    
+
    .gripql.gripql.field(“fields”, “$._data”))
    
 
    Returns all of the fields found in the data structure. Use $._data to get a listing
 of all fields found at the root level of records.
    
 
    gripql.type(name, field)
    
 
    Returns the data type of requested field. For the python client, if field is not provided, it is copied from name.
 Current returned types include NUMERIC, STRING and UNKNOWN. If a field is always null, or has multiple types, it will
 be returned as UNKNOWN.
    
-
    .count()
    
+
    .pivot(gid, key, value)
    
+
    Aggregate fields across multiple records into a single record using a pivot operations. A pivot is
+an operation where a two column matrix, with one columns for keys and another column for values, is
+transformed so that the keys are used to name the columns and the values are put in those columns.
+So the stream of vertices:
    
+
    {"_gid":"observation_a1", "_label":"Observation", "subject":"Alice", "key":"age", "value":36}
+{"_gid":"observation_a2", "_label":"Observation", "subject":"Alice", "key":"sex", "value":"Female"}
+{"_gid":"observation_a3", "_label":"Observation", "subject":"Alice", "key":"blood_pressure", "value":"111/78"}
+{"_gid":"observation_b1", "_label":"Observation", "subject":"Bob", "key":"age", "value":42}
+{"_gid":"observation_b2", "_label":"Observation", "subject":"Bob", "key":"sex", "value":"Male"}
+{"_gid":"observation_b3", "_label":"Observation", "subject":"Bob", "key":"blood_pressure", "value":"120/80"}
+
    with .pivot("subject", "key", "value") will produce:
    
+
    {"_id":"Alice", "age":36, "sex":"Female", "blood_pressure":"111/78"}
+{"_id":"Bob", "age":42, "sex":"Male", "blood_pressure":"120/80"}
+
    .count()
    
 
    Return the total count of returned edges/vertices.
    
 
    .distinct([fields])
    
 
    Only return distinct elements. An array of one or more fields may be passed in to define what elements are used to identify uniqueness. If none are
diff --git a/docs/docs/security/basic/index.html b/docs/docs/security/basic/index.html
index daccde3c..cff6519e 100644
--- a/docs/docs/security/basic/index.html
+++ b/docs/docs/security/basic/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
-  
-  
-  
-  
-  
+  
+  
+  
+  
+  
   
 
   
-  
-  
+  
+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
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+          
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+          
+          
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@@ -359,34 +359,34 @@ 
    Basic Auth
    
 
    By default, an GRIP server allows open access to its API endpoints, but it
 can be configured to require basic password authentication. To enable this,
 include users and passwords in your config file:
    
-
    Server:
-  BasicAuth:
-    - User: testuser
-      Password: abc123
-
    Make sure to properly protect the configuration file so that it's not readable
+
    Server:
+  BasicAuth:
+    - User: testuser
+      Password: abc123
+
    Make sure to properly protect the configuration file so that it’s not readable
 by everyone:
    
-
    $ chmod 600 grip.config.yml
-
    To use the password, set the GRIP_USER and GRIP_PASSWORD environment variables:
    
-
    $ export GRIP_USER=testuser
-$ export GRIP_PASSWORD=abc123
-$ grip list
-
    Using the Python Client
    
+
    $ chmod 600 grip.config.yml
+
    To use the password, set the GRIP_USER and GRIP_PASSWORD environment variables:
    
+
    $ export GRIP_USER=testuser
+$ export GRIP_PASSWORD=abc123
+$ grip list
+
    Using the Python Client
    
 
    Some GRIP servers may require authorizaiton to access its API endpoints. The client can be configured to pass
 authorization headers in its requests:
    
-
    import gripql
-
-# Basic Auth Header - {'Authorization': 'Basic dGVzdDpwYXNzd29yZA=='}
-G = gripql.Connection("https://bmeg.io", user="test", password="password").graph("bmeg")
-
    Although GRIP only supports basic password authentication, some servers may be proctected via a nginx or apache
+
    import gripql
+
+# Basic Auth Header - {'Authorization': 'Basic dGVzdDpwYXNzd29yZA=='}
+G = gripql.Connection("https://bmeg.io", user="test", password="password").graph("bmeg")
+
    Although GRIP only supports basic password authentication, some servers may be proctected via a nginx or apache
 server. The python client can be configured to handle these cases as well:
    
-
    import gripql 
-
-# Bearer Token - {'Authorization': 'Bearer iamnotarealtoken'}
-G = gripql.Connection("https://bmeg.io", token="iamnotarealtoken").graph("bmeg")
-
-# OAuth2 / Custom - {"OauthEmail": "fake.user@gmail.com", "OauthAccessToken": "iamnotarealtoken", "OauthExpires": 1551985931}
-G = gripql.Connection("https://bmeg.io",  credential_file="~/.grip_token.json").graph("bmeg")
-
    
+
    import gripql 
+
+# Bearer Token - {'Authorization': 'Bearer iamnotarealtoken'}
+G = gripql.Connection("https://bmeg.io", token="iamnotarealtoken").graph("bmeg")
+
+# OAuth2 / Custom - {"OauthEmail": "fake.user@gmail.com", "OauthAccessToken": "iamnotarealtoken", "OauthExpires": 1551985931}
+G = gripql.Connection("https://bmeg.io",  credential_file="~/.grip_token.json").graph("bmeg")
+
    
   
    • 
 
 
    
diff --git a/docs/docs/security/index.html b/docs/docs/security/index.html
index e1f9cc58..1df3b44d 100644
--- a/docs/docs/security/index.html
+++ b/docs/docs/security/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
-  
-  
-  
-  
-  
+  
+  
+  
+  
+  
   
 
   
-  
-  
+  
+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
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+          
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+          
+          
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diff --git a/docs/docs/tutorials/amazon/index.html b/docs/docs/tutorials/amazon/index.html
index 9ba984ea..f9d603d7 100644
--- a/docs/docs/tutorials/amazon/index.html
+++ b/docs/docs/tutorials/amazon/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
-  
-  
-  
-  
-  
+  
+  
+  
+  
+  
   
 
   
-  
-  
+  
+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
  • 
           
-          Overview
    • 
           
         
         
  • 
           
-          Download
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@@ -357,36 +357,36 @@
   
    
     
    Explore Amazon Product Co-Purchasing Network Metadata
    
 
    Download the data
    
-
    curl -O http://snap.stanford.edu/data/bigdata/amazon/amazon-meta.txt.gz
+
    curl -O http://snap.stanford.edu/data/bigdata/amazon/amazon-meta.txt.gz
 
    Convert the data into vertices and edges
    
-
    python $GOPATH/src/github.com/bmeg/grip/example/amazon_convert.py amazon-meta.txt.gz amazon.data
+
    python $GOPATH/src/github.com/bmeg/grip/example/amazon_convert.py amazon-meta.txt.gz amazon.data
 
    Create a graph called ‘amazon’
    
-
    grip create amazon
+
    grip create amazon
 
    Load the vertices/edges into the graph
    
-
    grip load amazon --edge amazon.data.edge --vertex amazon.data.vertex
+
    grip load amazon --edge amazon.data.edge --vertex amazon.data.vertex
 
    Query the graph
    
 
    command line client
    
-
    grip query amazon 'O.query().V().out()'
+
    grip query amazon 'O.query().V().out()'
 
    python client
    
-
    pip install "git+https://github.com/bmeg/grip.git#egg=gripql&subdirectory=gripql/python/"
-
    import gripql
-
-conn = gripql.Connection("http://localhost:8201")
-
-g = conn.graph("amazon")
-
-# Count the Vertices
-print g.query().V().count().execute()
-# Count the Edges
-print g.query().E().count().execute()
-
-# Try simple travesral
-print g.query().V("B00000I06U").outE().execute()
-
-# Find every Book that is similar to a DVD
-for result in g.query().V().has(gripql.eq("group", "Book")).as_("a").out("similar").has(gripql.eq("group", "DVD")).as_("b").select(["a", "b"]):
-    print result
-
    
+
    pip install "git+https://github.com/bmeg/grip.git#egg=gripql&subdirectory=gripql/python/"
+
    import gripql
+
+conn = gripql.Connection("http://localhost:8201")
+
+g = conn.graph("amazon")
+
+# Count the Vertices
+print g.query().V().count().execute()
+# Count the Edges
+print g.query().E().count().execute()
+
+# Try simple travesral
+print g.query().V("B00000I06U").outE().execute()
+
+# Find every Book that is similar to a DVD
+for result in g.query().V().has(gripql.eq("group", "Book")).as_("a").out("similar").has(gripql.eq("group", "DVD")).as_("b").select(["a", "b"]):
+    print result
+
    
   
    
 
 
    • 
diff --git a/docs/docs/tutorials/index.html b/docs/docs/tutorials/index.html
index ce65d18e..aecc4372 100644
--- a/docs/docs/tutorials/index.html
+++ b/docs/docs/tutorials/index.html
@@ -1,6 +1,6 @@
 
 
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+
   
   
 
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@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
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@@ -56,14 +56,14 @@
         
         
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-          Overview
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-          Download
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diff --git a/docs/docs/tutorials/pathway-commons/index.html b/docs/docs/tutorials/pathway-commons/index.html
index fb4bb15e..6ab639cd 100644
--- a/docs/docs/tutorials/pathway-commons/index.html
+++ b/docs/docs/tutorials/pathway-commons/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
-  
-  
-  
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+  
+  
+  
+  
+  
   
 
   
-  
-  
+  
+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
  • 
           
-          Overview
    • 
           
         
         
  • 
           
-          Download
    • 
           
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@@ -356,9 +356,9 @@
 
   
    
     
    Get Pathway Commons release
    
-
    curl -O http://www.pathwaycommons.org/archives/PC2/v10/PathwayCommons10.All.BIOPAX.owl.gz
+
    curl -O http://www.pathwaycommons.org/archives/PC2/v10/PathwayCommons10.All.BIOPAX.owl.gz
 
    Convert to Property Graph
    
-
    grip rdf --dump --gzip pc PathwayCommons10.All.BIOPAX.owl.gz -m "http://pathwaycommons.org/pc2/#=pc:" -m "http://www.biopax.org/release/biopax-level3.owl#=biopax:"
+
    grip rdf --dump --gzip pc PathwayCommons10.All.BIOPAX.owl.gz -m "http://pathwaycommons.org/pc2/#=pc:" -m "http://www.biopax.org/release/biopax-level3.owl#=biopax:"
 
    
   
    
 
diff --git a/docs/docs/tutorials/tcga-rna/index.html b/docs/docs/tutorials/tcga-rna/index.html
index 836dd502..8538f913 100644
--- a/docs/docs/tutorials/tcga-rna/index.html
+++ b/docs/docs/tutorials/tcga-rna/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
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+  
+  
+  
+  
+  
   
 
   
-  
-  
+  
+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
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+        
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-          Overview
    • 
           
         
         
  • 
           
-          Download
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@@ -357,37 +357,37 @@
   
    
     
    Explore TCGA RNA Expression Data
    
 
    Create the graph
    
-
    grip create tcga-rna
+
    grip create tcga-rna
 
    Get the data
    
-
    curl -O http://download.cbioportal.org/gbm_tcga_pub2013.tar.gz
+
    curl -O http://download.cbioportal.org/gbm_tcga_pub2013.tar.gz
 tar xvzf gbm_tcga_pub2013.tar.gz
 
    Load clinical data
    
-
    ./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_clinical.txt --row-label 'Donor'
+
    ./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_clinical.txt --row-label 'Donor'
 
    Load RNASeq data
    
-
    ./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_RNA_Seq_v2_expression_median.txt -t  --index-col 1 --row-label RNASeq --row-prefix "RNA:" --exclude RNA:Hugo_Symbol
+
    ./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_RNA_Seq_v2_expression_median.txt -t  --index-col 1 --row-label RNASeq --row-prefix "RNA:" --exclude RNA:Hugo_Symbol
 
    Connect RNASeq data to Clinical data
    
-
    ./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_RNA_Seq_v2_expression_median.txt -t  --index-col 1 --no-vertex --edge 'RNA:{_gid}' rna
+
    ./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_RNA_Seq_v2_expression_median.txt -t  --index-col 1 --no-vertex --edge 'RNA:{_gid}' rna
 
    Connect Clinical data to subtypes
    
-
    ./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_clinical.txt --no-vertex -e "{EXPRESSION_SUBTYPE}" subtype --dst-vertex "{EXPRESSION_SUBTYPE}" Subtype
+
    ./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_clinical.txt --no-vertex -e "{EXPRESSION_SUBTYPE}" subtype --dst-vertex "{EXPRESSION_SUBTYPE}" Subtype
 
    Load Hugo Symbol to EntrezID translation table from RNA matrix annotations
    
-
    ./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_RNA_Seq_v2_expression_median.txt --column-include Entrez_Gene_Id --row-label Gene
+
    ./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_RNA_Seq_v2_expression_median.txt --column-include Entrez_Gene_Id --row-label Gene
 
    Load Mutation Information
    
-
    ./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_mutations_extended.txt --skiprows 1 --index-col -1  --regex Matched_Norm_Sample_Barcode '\-\d\d$' '' --edge '{Matched_Norm_Sample_Barcode}' variantIn --edge '{Hugo_Symbol}' effectsGene --column-exclude ma_func.impact ma_fi.score MA_FI.score MA_Func.Impact MA:link.MSA MA:FImpact MA:protein.change MA:link.var MA:FIS MA:link.PDB --row-label Variant
+
    ./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_mutations_extended.txt --skiprows 1 --index-col -1  --regex Matched_Norm_Sample_Barcode '\-\d\d$' '' --edge '{Matched_Norm_Sample_Barcode}' variantIn --edge '{Hugo_Symbol}' effectsGene --column-exclude ma_func.impact ma_fi.score MA_FI.score MA_Func.Impact MA:link.MSA MA:FImpact MA:protein.change MA:link.var MA:FIS MA:link.PDB --row-label Variant
 
    Load Proneural samples into a matrix
    
-
    import pandas
-import gripql
-
-conn = gripql.Connection("http://localhost:8201")
-g = conn.graph("tcga-rna")
-genes = {}
-for k, v in g.query().V().hasLabel("Gene").render(["_gid", "Hugo_Symbol"]):
-    genes[k] = v
-data = {}
-for row in g.query().V("Proneural").in_().out("rna").render(["_gid", "_data"]):
-    data[row[0]] = row[1]
-samples = pandas.DataFrame(data).rename(genes).transpose().fillna(0.0)
-
    Matrix Load project
    
-
    usage: load_matrix.py [-h] [--sep SEP] [--server SERVER]
+
    import pandas
+import gripql
+
+conn = gripql.Connection("http://localhost:8201")
+g = conn.graph("tcga-rna")
+genes = {}
+for k, v in g.query().V().hasLabel("Gene").render(["_gid", "Hugo_Symbol"]):
+    genes[k] = v
+data = {}
+for row in g.query().V("Proneural").in_().out("rna").render(["_gid", "_data"]):
+    data[row[0]] = row[1]
+samples = pandas.DataFrame(data).rename(genes).transpose().fillna(0.0)
+
    Matrix Load project
    
+
    usage: load_matrix.py [-h] [--sep SEP] [--server SERVER]
                       [--row-label ROW_LABEL] [--row-prefix ROW_PREFIX] [-t]
                       [--index-col INDEX_COL] [--connect]
                       [--col-label COL_LABEL] [--col-prefix COL_PREFIX]
@@ -414,16 +414,16 @@ 
    Explore TCGA RNA Expression Data
    
   --index-col INDEX_COL
                         Column number to use as index (and gid for vertex
                         load)
-  --connect             Switch to 'fully connected mode' and load matrix cell
+  --connect             Switch to 'fully connected mode' and load matrix cell
                         values on edges between row and column names
   --col-label COL_LABEL
-                        Column vertex label in 'connect' mode
+                        Column vertex label in 'connect' mode
   --col-prefix COL_PREFIX
-                        Prefix added to col vertex gid in 'connect' mode
+                        Prefix added to col vertex gid in 'connect' mode
   --edge-label EDGE_LABEL
-                        Edge label for edges in 'connect' mode
+                        Edge label for edges in 'connect' mode
   --edge-prop EDGE_PROP
-                        Property name for storing value when in 'connect' mode
+                        Property name for storing value when in 'connect' mode
   --columns [COLUMNS [COLUMNS ...]]
                         Rename columns in TSV
   --column-include COLUMN_INCLUDE
@@ -438,7 +438,6 @@ 
    Explore TCGA RNA Expression Data
    
   -x EXCLUDE, --exclude EXCLUDE
                         Exclude row id
   -d                    Run in debug mode. Print actions and make no changes
-
 
    
   
    
 
diff --git a/docs/download/index.html b/docs/download/index.html
index c76a6a4c..00b2755e 100644
--- a/docs/download/index.html
+++ b/docs/download/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
-  
-  
-  
-  
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+  
+  
+  
+  
+  
   
 
   
-  
-  
+  
+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
  • 
           
-          Overview
    • 
           
         
         
  • 
           
-          Download
    • 
           
@@ -75,7 +75,7 @@
           
  • 
             
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  • 
             
@@ -356,24 +356,24 @@
 
   
    
     
-
    Download 0.7.0
    
+
    Download 
    
 
 
 
 
    Release History
    
 
    See the Releases page for release history.
    
 
    Docker
    
-
    docker pull bmeg/grip
-docker run bmeg/grip grip server
-
    
-
    $ git clone https://github.com/bmeg/grip.git
-$ cd grip
-$ make
-
    
+
    docker pull bmeg/grip
+docker run bmeg/grip grip server
+
    
+
    $ git clone https://github.com/bmeg/grip.git
+$ cd grip
+$ make
+
    
   
    
 
 
    • 
diff --git a/docs/graph_schemas/index.html b/docs/graph_schemas/index.html
deleted file mode 100644
index 31784dc9..00000000
--- a/docs/graph_schemas/index.html
+++ /dev/null
@@ -1,356 +0,0 @@
-
-
-
-  
-  
-
-  
-  
-
-  
-  Graph Schemas · GRIP
-  
-
-  
-  
-  
-  
-  
-  
-  
-
-  
-  
-  
-
-  
-  
-
-
-
-
-  
    
-    
    
-      
    
-        
    GRIP
    
-      
    
-      
-      
    
-        
    OHSU Comp Bio
    
-      
    
-    
    
-  
    
-
-
-
    
-
-  
    
-    
-  
    
-
-  
    
-    
    Graph Schemas
    
-
    Graph schemas are themselves an instance of a graph. As such, they can be traversed like any other graph.
-The schemas are automatically added to the database following the naming pattern {graph-name}__schema__.
    
-
    Get the schema of a graph
    
-
    The schema of a graph can be accessed via a GET request to /v1/graph/{graph-name}/schema.
    
-
    Alternatively, you can use the grip CLI: grip schema get {graph-name}.
    
-
    Describing graph schemas
    
-
    There are several methods for describing the schema of a graph.
    
-
      
-
    • Provide the schema (as a YAML file) to the server at runtime. grip server --schema {schema-file}
      • 
-
    • POST the schema /v1/graph/{graph-name}/schema via curl or use the CLI grip schema post --yaml {file} --json {file}.
      • 
-
    • Configure Grip to build the schema by sampling the data in each graph.
      • 
-
    
-
    Server:
-  # Should the server periodically build the graph schemas?
-  AutoBuildSchemas: true
-  # How often the server should rebuild the graph schemas. Set to 0 to turn off
-  SchemaRefreshInterval: "24h"
-  # How many vertices/edges to inspect to infer the schema
-  SchemaInspectN: 500
-  # Strategy to use for selecting the vertices/edges to inspect.
-  # Random if True; first N otherwise
-  SchemaRandomSample: true
-
    Example schema
    
-
    graph: example-graph
-
-edges:
-- data: {}
- from: Human
- gid: (Human)--starship->(Starship)
- label: starship
- to: Starship
-- data: {}
- from: Human
- gid: (Human)--friend->(Human)
- label: friend
- to: Human
-- data: {}
- from: Human
- gid: (Human)--friend->(Droid)
- label: friend
- to: Droid
-- data: {}
- from: Human
- gid: (Human)--appearsIn->(Movie)
- label: appearsIn
- to: Movie
-
-vertices:
-- data:
-   name: STRING
- gid: Movie
- label: Movie
-- data:
-   length: NUMERIC
-   name: STRING
- gid: Starship
- label: Starship
-- data:
-   name: STRING
-   primaryFunction: STRING
- gid: Droid
- label: Droid
-- data:
-   height: NUMERIC
-   homePlanet: STRING
-   mass: NUMERIC
-   name: STRING
- gid: Human
- label: Human
-
    
-  
    
-
-
    
-
-
diff --git a/docs/index.html b/docs/index.html
index fcf913fc..8863494b 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -1,8 +1,7 @@
-
 
 
 
-	
+	
   
   
 
@@ -14,18 +13,18 @@
   
 
   
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+  
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+  
   
 
   
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+  
+  
 
-  
+  
   
 
 
@@ -34,11 +33,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -49,149 +48,154 @@
   
    
 
 
-
    
-  
    GRaph Integration Platform (GRIP)
    
-  Download
-  Documentation
-
    
+
    
+    
    
+        
    GRaph Integration Platform (GRIP)
    
+        Download
+        Documentation
+    
    
+
    
 
 
    
-
-  
    
-
-    
    
-
+    
    
+        
    
     
    
 
-  
    
+    
    
+        
    
+            The GRaph Integration Platform (GRIP) is a graph query engine
+            designed to span across multiple database backends. It supports
+            Mongo, SQL and has a plug in architecture to allow new resource to
+            be added.
+        
    
 
-  
    
-    
    
-      The GRaph Integration Platform (GRIP) is a graph query engine designed to 
-      span across multiple database backends. It supports Mongo, SQL, ElasticSearch
-      and has a plug in architecture to allow new resource to be added.
-    
    
+        
    A quick introduction
    
 
-    
    A quick introduction
    
+        
    
+            
    
+                
    Start an GRIP server
    
+            
    
 
-      
    
-        
    
-          
    Start an GRIP server
    
+            
    
+                
    $ grip server --config grip.yml
    
+            
    
         
    
 
-        
    
-          
    $ grip server --config grip.yml
    
-        
    
-      
    
+        
    
+            
    
+                
    List all graphs
    
+            
    
 
-      
    
-        
    
-          
    List all graphs
    
+            
    
+                
    $ grip list
    
+            
    
         
    
 
-        
    
-          
    $ grip list
    
-        
    
-      
    
+        
    
+            
    
+                
    Create a graph
    
+            
    
 
-      
    
-        
    
-          
    Create a graph
    
+            
    
+                
    $ grip create example
    
+            
    
         
    
 
-        
    
-          
    $ grip create example
    
-        
    
-      
    
+        
    
+            
    
+                
    Drop a graph
    
+            
    
 
-      
    
-        
    
-          
    Drop a graph
    
+            
    
+                
    $ grip drop example
    
+            
    
         
    
 
-        
    
-          
    $ grip drop example
    
-        
    
-      
    
+        
    
+            
    
+                
    Load data into a graph
    
+            
    
 
-      
    
-        
    
-          
    Load data into a  graph
    
+            
    
+                
    $ grip load example --edge edges.txt --vertex vertices.txt
    
+            
    
         
    
 
-        
    
-          
    $ grip load example --edge edges.txt --vertex vertices.txt
    
-        
    
-      
    
+        
    
+            
    
+                
    Query a graph
    
+            
    
 
-      
    
-        
    
-          
    Query a graph
    
+            
    
+                
    $ grip query example 'V().hasLabel("users")'
    
+            
    
         
    
 
-        
    
-          
    $ grip query example 'V().hasLabel("users")'
    
-        
    
-      
    
+        
    
+            
    
+                
    Get vertex/edge counts for a graph
    
+            
    
 
-      
    
-        
    
-          
    Get vertex/edge counts for a graph
    
+            
    
+                
    $ grip info example
    
+            
    
         
    
 
-        
    
-          
    $ grip info example
    
-        
    
-      
    
+        
    
+            
    
+                
    Get the schema for a graph
    
+            
    
 
-      
    
-        
    
-          
    Get the schema for a graph
    
+            
    
+                
    $ grip schema get example
    
+            
    
         
    
 
-        
    
-          
    $ grip schema get example
    
-        
    
-      
    
+        
    
+            
    
+                
    Dump vertices/edges from a graph
    
+            
    
 
-      
    
-        
    
-          
    Dump vertices/edges from a graph
    
+            
    
+                
    $ grip dump example --vertex
    
+            
    
         
    
+    
    
 
-        
    
-          
    $ grip dump example --vertex
    
+    
    
+        
    
+            
    
+                
    Drop in for a chat.
    
+                
    
+                    Join the
+                    Gitter channel.
+                
    
+            
    
+
+            
    
+                
    Get the code.
    
+                
    
+                    Head over to
+                    GitHub and dig
+                    in.
+                
    
+            
    
+
+            
    
+                
    Give feedback.
    
+                
    
+                    Let us know
+                    what you think.
+                
    
+            
    
         
    
-      
    
-
-  
    
-
-  
    
-
-    
    
-
-      
    
-        
    Drop in for a chat.
    
-        
    Join the Gitter channel.
    
-      
    
-
-      
    
-        
    Get the code.
    
-        
    Head over to GitHub and dig in.
    
-      
    
-
-      
    
-        
    Give feedback.
    
-        
    
-          Let us know what you think.
    
-      
    
-
     
    
 
-  
    
-
-  
    
-
+    
    
 
    
 
 
diff --git a/docs/index.xml b/docs/index.xml
index 2a86c8e3..28df0421 100644
--- a/docs/index.xml
+++ b/docs/index.xml
@@ -2,391 +2,255 @@
 
   
     GRIP
-    https://bmeg.github.io/grip/
+    http://localhost:1313/grip/
     Recent content on GRIP
-    Hugo -- gohugo.io
+    Hugo
     en-us
-    
-	
-    
-    
+    
     
       
-      https://bmeg.github.io/grip/docs/tutorials/pathway-commons/
+      http://localhost:1313/grip/docs/tutorials/pathway-commons/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/tutorials/pathway-commons/
-      Get Pathway Commons release
-curl -O http://www.pathwaycommons.org/archives/PC2/v10/PathwayCommons10.All.BIOPAX.owl.gz Convert to Property Graph
-grip rdf --dump --gzip pc PathwayCommons10.All.BIOPAX.owl.gz -m &quot;http://pathwaycommons.org/pc2/#=pc:&quot; -m &quot;http://www.biopax.org/release/biopax-level3.owl#=biopax:&quot; 
+      http://localhost:1313/grip/docs/tutorials/pathway-commons/
+      <p>Get Pathway Commons release</p>
<pre tabindex="0"><code>curl -O http://www.pathwaycommons.org/archives/PC2/v10/PathwayCommons10.All.BIOPAX.owl.gz
</code></pre><p>Convert to Property Graph</p>
<pre tabindex="0"><code>grip rdf --dump --gzip pc PathwayCommons10.All.BIOPAX.owl.gz -m &#34;http://pathwaycommons.org/pc2/#=pc:&#34; -m &#34;http://www.biopax.org/release/biopax-level3.owl#=biopax:&#34;
</code></pre>
     
-    
     
       Amazon Purchase Network
-      https://bmeg.github.io/grip/docs/tutorials/amazon/
+      http://localhost:1313/grip/docs/tutorials/amazon/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/tutorials/amazon/
-      Explore Amazon Product Co-Purchasing Network Metadata Download the data
-curl -O http://snap.stanford.edu/data/bigdata/amazon/amazon-meta.txt.gz Convert the data into vertices and edges
-python $GOPATH/src/github.com/bmeg/grip/example/amazon_convert.py amazon-meta.txt.gz amazon.data Create a graph called &lsquo;amazon&rsquo;
-grip create amazon Load the vertices/edges into the graph
-grip load amazon --edge amazon.data.edge --vertex amazon.data.vertex Query the graph
-command line client
-grip query amazon 'O.query().V().out()' python client
-pip install &quot;git+https://github.com/bmeg/grip.git#egg=gripql&amp;subdirectory=gripql/python/&quot; import gripql conn = gripql.Connection(&#34;http://localhost:8201&#34;) g = conn.graph(&#34;amazon&#34;) # Count the Vertices print g.
+      http://localhost:1313/grip/docs/tutorials/amazon/
+      <h1 id="explore-amazon-product-co-purchasing-network-metadata">Explore Amazon Product Co-Purchasing Network Metadata</h1>
<p>Download the data</p>
<pre tabindex="0"><code>curl -O http://snap.stanford.edu/data/bigdata/amazon/amazon-meta.txt.gz
</code></pre><p>Convert the data into vertices and edges</p>
<pre tabindex="0"><code>python $GOPATH/src/github.com/bmeg/grip/example/amazon_convert.py amazon-meta.txt.gz amazon.data
</code></pre><p>Create a graph called &lsquo;amazon&rsquo;</p>
<pre tabindex="0"><code>grip create amazon
</code></pre><p>Load the vertices/edges into the graph</p>
<pre tabindex="0"><code>grip load amazon --edge amazon.data.edge --vertex amazon.data.vertex
</code></pre><p>Query the graph</p>
<p><em>command line client</em></p>
<pre tabindex="0"><code>grip query amazon &#39;O.query().V().out()&#39;
</code></pre><p><em>python client</em></p>
<pre tabindex="0"><code>pip install &#34;git+https://github.com/bmeg/grip.git#egg=gripql&amp;subdirectory=gripql/python/&#34;
</code></pre><div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span><span style="color:#f92672">import</span> gripql
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span>conn <span style="color:#f92672">=</span> gripql<span style="color:#f92672">.</span>Connection(<span style="color:#e6db74">&#34;http://localhost:8201&#34;</span>)
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span>g <span style="color:#f92672">=</span> conn<span style="color:#f92672">.</span>graph(<span style="color:#e6db74">&#34;amazon&#34;</span>)
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span><span style="color:#75715e"># Count the Vertices</span>
</span></span><span style="display:flex;"><span>print g<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>V()<span style="color:#f92672">.</span>count()<span style="color:#f92672">.</span>execute()
</span></span><span style="display:flex;"><span><span style="color:#75715e"># Count the Edges</span>
</span></span><span style="display:flex;"><span>print g<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>E()<span style="color:#f92672">.</span>count()<span style="color:#f92672">.</span>execute()
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span><span style="color:#75715e"># Try simple travesral</span>
</span></span><span style="display:flex;"><span>print g<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>V(<span style="color:#e6db74">&#34;B00000I06U&#34;</span>)<span style="color:#f92672">.</span>outE()<span style="color:#f92672">.</span>execute()
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span><span style="color:#75715e"># Find every Book that is similar to a DVD</span>
</span></span><span style="display:flex;"><span><span style="color:#66d9ef">for</span> result <span style="color:#f92672">in</span> g<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>V()<span style="color:#f92672">.</span>has(gripql<span style="color:#f92672">.</span>eq(<span style="color:#e6db74">&#34;group&#34;</span>, <span style="color:#e6db74">&#34;Book&#34;</span>))<span style="color:#f92672">.</span>as_(<span style="color:#e6db74">&#34;a&#34;</span>)<span style="color:#f92672">.</span>out(<span style="color:#e6db74">&#34;similar&#34;</span>)<span style="color:#f92672">.</span>has(gripql<span style="color:#f92672">.</span>eq(<span style="color:#e6db74">&#34;group&#34;</span>, <span style="color:#e6db74">&#34;DVD&#34;</span>))<span style="color:#f92672">.</span>as_(<span style="color:#e6db74">&#34;b&#34;</span>)<span style="color:#f92672">.</span>select([<span style="color:#e6db74">&#34;a&#34;</span>, <span style="color:#e6db74">&#34;b&#34;</span>]):
</span></span><span style="display:flex;"><span>    print result
</span></span></code></pre></div>
     
-    
     
       Basic Auth
-      https://bmeg.github.io/grip/docs/security/basic/
+      http://localhost:1313/grip/docs/security/basic/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/security/basic/
-      Basic Auth By default, an GRIP server allows open access to its API endpoints, but it can be configured to require basic password authentication. To enable this, include users and passwords in your config file:
-Server: BasicAuth: - User: testuser Password: abc123 Make sure to properly protect the configuration file so that it's not readable by everyone:
-$ chmod 600 grip.config.yml To use the password, set the GRIP_USER and GRIP_PASSWORD environment variables:
+      http://localhost:1313/grip/docs/security/basic/
+      <h1 id="basic-auth">Basic Auth</h1>
<p>By default, an GRIP server allows open access to its API endpoints, but it
can be configured to require basic password authentication. To enable this,
include users and passwords in your config file:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-yaml" data-lang="yaml"><span style="display:flex;"><span><span style="color:#f92672">Server</span>:
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">BasicAuth</span>:
</span></span><span style="display:flex;"><span>    - <span style="color:#f92672">User</span>: <span style="color:#ae81ff">testuser</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">Password</span>: <span style="color:#ae81ff">abc123</span>
</span></span></code></pre></div><p>Make sure to properly protect the configuration file so that it&rsquo;s not readable
by everyone:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-bash" data-lang="bash"><span style="display:flex;"><span>$ chmod <span style="color:#ae81ff">600</span> grip.config.yml
</span></span></code></pre></div><p>To use the password, set the <code>GRIP_USER</code> and <code>GRIP_PASSWORD</code> environment variables:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-bash" data-lang="bash"><span style="display:flex;"><span>$ export GRIP_USER<span style="color:#f92672">=</span>testuser
</span></span><span style="display:flex;"><span>$ export GRIP_PASSWORD<span style="color:#f92672">=</span>abc123
</span></span><span style="display:flex;"><span>$ grip list
</span></span></code></pre></div><h2 id="using-the-python-client">Using the Python Client</h2>
<p>Some GRIP servers may require authorizaiton to access its API endpoints. The client can be configured to pass
authorization headers in its requests:</p>
     
-    
     
       Database Configuration
-      https://bmeg.github.io/grip/docs/databases/
+      http://localhost:1313/grip/docs/databases/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/databases/
+      http://localhost:1313/grip/docs/databases/
       
     
-    
     
       Developers
-      https://bmeg.github.io/grip/docs/developers/
+      http://localhost:1313/grip/docs/developers/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/developers/
+      http://localhost:1313/grip/docs/developers/
       
     
-    
     
       Download
-      https://bmeg.github.io/grip/download/
+      http://localhost:1313/grip/download/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/download/
-       Download 0.7.0  Linux MacOS Windows is not supported sorry!  Release History See the Releases page for release history.
-Docker docker pull bmeg/grip docker run bmeg/grip grip server $ git clone https://github.com/bmeg/grip.git $ cd grip $ make 
+      http://localhost:1313/grip/download/
+      <h3>Download </h3>

<ul>
  <li><a href="https://github.com/bmeg/grip/releases/download//grip-linux-amd64-.tar.gz">Linux</a></li>
  <li><a href="https://github.com/bmeg/grip/releases/download//grip-darwin-amd64-.tar.gz">MacOS</a></li>
  <li><small>Windows is not supported sorry!</small></li>
</ul>

<h3 id="release-history">Release History</h3>
<p>See the <a href="https://github.com/bmeg/grip/releases">Releases</a> page for release history.</p>
<h2 id="docker">Docker</h2>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-shell" data-lang="shell"><span style="display:flex;"><span>docker pull bmeg/grip
</span></span><span style="display:flex;"><span>docker run bmeg/grip grip server
</span></span></code></pre></div><!-- raw HTML omitted -->
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-shell" data-lang="shell"><span style="display:flex;"><span>$ git clone https://github.com/bmeg/grip.git
</span></span><span style="display:flex;"><span>$ cd grip
</span></span><span style="display:flex;"><span>$ make
</span></span></code></pre></div>
     
-    
     
       drop
-      https://bmeg.github.io/grip/docs/commands/drop/
+      http://localhost:1313/grip/docs/commands/drop/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/commands/drop/
-      grip drop &lt;graph&gt; Deletes a graph.
+      http://localhost:1313/grip/docs/commands/drop/
+      <pre tabindex="0"><code>grip drop &lt;graph&gt;
</code></pre><p>Deletes a graph.</p>
     
-    
-    
-      Elasticsearch
-      https://bmeg.github.io/grip/docs/databases/elastic/
-      Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/databases/elastic/
-      Elasticsearch GRIP supports storing vertices and edges in Elasticsearch.
-Config:
-Default: elastic Drivers: elastic: Elasticsearch: URL: &#34;http://localhost:9200&#34; DBName: &#34;gripdb&#34; Username: &#34;&#34; Password: &#34;&#34; 
-    
-    
     
       Embedded KV Store
-      https://bmeg.github.io/grip/docs/databases/kvstore/
+      http://localhost:1313/grip/docs/databases/kvstore/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/databases/kvstore/
-      Embedded Key Value Stores GRIP supports storing vertices and edges in a variety of key-value stores including:
- Badger BoltDB LevelDB  Config:
-Default: kv Driver: kv: Badger: grip.db 
+      http://localhost:1313/grip/docs/databases/kvstore/
+      <h1 id="embedded-key-value-stores">Embedded Key Value Stores</h1>
<p>GRIP supports storing vertices and edges in a variety of key-value stores including:</p>
<ul>
<li><a href="https://github.com/dgraph-io/badger">Badger</a></li>
<li><a href="https://github.com/boltdb/bolt">BoltDB</a></li>
<li><a href="https://github.com/syndtr/goleveldb">LevelDB</a></li>
</ul>
<p>Config:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-yaml" data-lang="yaml"><span style="display:flex;"><span><span style="color:#f92672">Default</span>: <span style="color:#ae81ff">kv</span>
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span><span style="color:#f92672">Driver</span>:
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">kv</span>:
</span></span><span style="display:flex;"><span>    <span style="color:#f92672">Badger</span>: <span style="color:#ae81ff">grip.db</span>
</span></span></code></pre></div>
     
-    
     
       er
-      https://bmeg.github.io/grip/docs/commands/er/
+      http://localhost:1313/grip/docs/commands/er/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/commands/er/
-      grip er The External Resource system allows GRIP to plug into existing data systems and integrate them into queriable graphs. The grip er sub command acts as a client to the external resource plugin proxies, issues command and displays the results. This is often useful for debugging external resources before making them part of an actual graph.
-List collections provided by external resource
-grip er list Get info about a collection
+      http://localhost:1313/grip/docs/commands/er/
+      <pre tabindex="0"><code>grip er
</code></pre><p>The <em>External Resource</em> system allows GRIP to plug into existing data systems and
integrate them into queriable graphs. The <code>grip er</code> sub command acts as a client
to the external resource plugin proxies, issues command and displays the results.
This is often useful for debugging external resources before making them part of
an actual graph.</p>
<p>List collections provided by external resource</p>
<pre tabindex="0"><code>grip er list
</code></pre><p>Get info about a collection</p>
<pre tabindex="0"><code>grip er info
</code></pre><p>List ids from a collection</p>
     
-    
     
       External Resource Proxies
-      https://bmeg.github.io/grip/docs/gripper/proxy/
+      http://localhost:1313/grip/docs/gripper/proxy/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/gripper/proxy/
-      GRIPPER GRIPPER proxy With the external resources normalized to a single data model, the graph model describes how to connect the set of collections into a graph model. Each GRIPPER is required to provide a GRPC interface that allows access to collections stored in the resource.
-The required functions include:
-rpc GetCollections(Empty) returns (stream Collection); GetCollections returns a list of all of the Collections accessible via this server.
-rpc GetCollectionInfo(Collection) returns (CollectionInfo); GetCollectionInfo provides information, such as the list of indexed fields, in a collection.
+      http://localhost:1313/grip/docs/gripper/proxy/
+      <h1 id="gripper">GRIPPER</h1>
<h2 id="gripper-proxy">GRIPPER proxy</h2>
<p>With the external resources normalized to a single data model, the graph model
describes how to connect the set of collections into a graph model. Each GRIPPER
is required to provide a GRPC interface that allows access to collections stored
in the resource.</p>
<p>The required functions include:</p>
<pre tabindex="0"><code>rpc GetCollections(Empty) returns (stream Collection);
</code></pre><p><code>GetCollections</code> returns a list of all of the Collections accessible via this server.</p>
<pre tabindex="0"><code>rpc GetCollectionInfo(Collection) returns (CollectionInfo);
</code></pre><p><code>GetCollectionInfo</code> provides information, such as the list of indexed fields, in a collection.</p>
     
-    
     
       Getting Started
-      https://bmeg.github.io/grip/docs/queries/getting_started/
+      http://localhost:1313/grip/docs/queries/getting_started/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/queries/getting_started/
-      Getting Started GRIP has an API for making graph queries using structured data. Queries are defined using a series of step operations.
-Install the Python Client Available on PyPI.
-pip install gripql Or install the latest development version:
-pip install &quot;git+https://github.com/bmeg/grip.git#subdirectory=gripql/python&quot; Using the Python Client Let's go through the features currently supported in the python client.
-First, import the client and create a connection to an GRIP server:
-import gripql G = gripql.
+      http://localhost:1313/grip/docs/queries/getting_started/
+      <h1 id="getting-started">Getting Started</h1>
<p>GRIP has an API for making graph queries using structured data. Queries are defined using a series of step <a href="http://localhost:1313/grip/docs/queries/operations">operations</a>.</p>
<h2 id="install-the-python-client">Install the Python Client</h2>
<p>Available on <a href="https://pypi.org/project/gripql/">PyPI</a>.</p>
<pre tabindex="0"><code>pip install gripql
</code></pre><p>Or install the latest development version:</p>
<pre tabindex="0"><code>pip install &#34;git+https://github.com/bmeg/grip.git#subdirectory=gripql/python&#34;
</code></pre><h2 id="using-the-python-client">Using the Python Client</h2>
<p>Let&rsquo;s go through the features currently supported in the python client.</p>
<p>First, import the client and create a connection to an GRIP server:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span><span style="color:#f92672">import</span> gripql
</span></span><span style="display:flex;"><span>G <span style="color:#f92672">=</span> gripql<span style="color:#f92672">.</span>Connection(<span style="color:#e6db74">&#34;https://bmeg.io&#34;</span>)<span style="color:#f92672">.</span>graph(<span style="color:#e6db74">&#34;bmeg&#34;</span>)
</span></span></code></pre></div><p>Some GRIP servers may require authorizaiton to access its API endpoints. The client can be configured to pass
authorization headers in its requests.</p>
     
-    
     
       Graph Model
-      https://bmeg.github.io/grip/docs/gripper/graphmodel/
+      http://localhost:1313/grip/docs/gripper/graphmodel/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/gripper/graphmodel/
-      GRIPPER GRIP Plugable External Resources
-Graph Model The graph model describes how GRIP will access multiple gripper servers. The mapping of these data resources is done using a graph. The vertices represent how each vertex type will be mapped, and the edges describe how edges will be created. The gid of each vertex represents the prefix domain of all vertices that can be found in that source.
-The sources referenced by the graph are provided to GRIP at run time, each named resource is a different GRIPPER plugin that abstracts an external resource.
+      http://localhost:1313/grip/docs/gripper/graphmodel/
+      <h1 id="gripper">GRIPPER</h1>
<p>GRIP Plugable External Resources</p>
<h2 id="graph-model">Graph Model</h2>
<p>The graph model describes how GRIP will access multiple gripper servers. The mapping
of these data resources is done using a graph. The <code>vertices</code> represent how each vertex
type will be mapped, and the <code>edges</code> describe how edges will be created. The <code>gid</code>
of each vertex represents the prefix domain of all vertices that can be found in that
source.</p>
<p>The <code>sources</code> referenced by the graph are provided to GRIP at run time, each named resource is a
different GRIPPER plugin that abstracts an external resource.
The <code>vertices</code> section describes how different collections
found in these sources will be turned into Vertex found in the graph. Finally, the
<code>edges</code> section describes the different kinds of rules that can be used build the
edges in the graph.</p>
     
-    
     
       Graph Schemas
-      https://bmeg.github.io/grip/docs/graphql/graph_schemas/
+      http://localhost:1313/grip/docs/graphql/graph_schemas/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/graphql/graph_schemas/
-      Graph Schemas Most GRIP based graphs are not required to have a strict schema. However, GraphQL requires a graph schema as part of it's API. To utilize the GraphQL endpoint, there must be a Graph Schema provided to be used by the GRIP engine to determine how to render a GraphQL endpoint. Graph schemas are themselves an instance of a graph. As such, they can be traversed like any other graph.
+      http://localhost:1313/grip/docs/graphql/graph_schemas/
+      <h1 id="graph-schemas">Graph Schemas</h1>
<p>Most GRIP based graphs are not required to have a strict schema. However, GraphQL requires
a graph schema as part of it&rsquo;s API. To utilize the GraphQL endpoint, there must be a
Graph Schema provided to be used by the GRIP engine to determine how to render a GraphQL endpoint.
Graph schemas are themselves an instance of a graph. As such, they can be traversed like any other graph.
The schemas are automatically added to the database following the naming pattern. <code>{graph-name}__schema__</code></p>
     
-    
     
       GraphQL
-      https://bmeg.github.io/grip/docs/graphql/
+      http://localhost:1313/grip/docs/graphql/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/graphql/
+      http://localhost:1313/grip/docs/graphql/
       
     
-    
     
       GraphQL
-      https://bmeg.github.io/grip/docs/graphql/graphql/
+      http://localhost:1313/grip/docs/graphql/graphql/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/graphql/graphql/
-      GraphQL GraphQL support is considered Alpha. The code is not stable and the API will likely change. GraphQL access is only supported when using the MongoDB driver
-GRIP supports GraphQL access of the property graphs. Currently this is read-only access to the graph.
-Load built-in example graph Loading the example data and the example schema:
-grip load example-graph See the example graph
-grip dump example-graph --vertex --edge Sample components of the graph to produce a schema and store to a file
+      http://localhost:1313/grip/docs/graphql/graphql/
+      <h1 id="graphql">GraphQL</h1>
<p><strong>GraphQL support is considered Alpha. The code is not stable and the API will likely change.</strong>
<strong><em>GraphQL access is only supported when using the MongoDB driver</em></strong></p>
<p>GRIP supports GraphQL access of the property graphs. Currently this is read-only access to the graph.</p>
<h3 id="load-built-in-example-graph">Load built-in example graph</h3>
<p>Loading the example data and the example schema:</p>
<pre tabindex="0"><code>grip load example-graph
</code></pre><p>See the example graph</p>
<pre tabindex="0"><code>grip dump example-graph --vertex --edge
</code></pre><p>Sample components of the graph to produce a schema and store to a file</p>
     
-    
     
       GRIP Commands
-      https://bmeg.github.io/grip/docs/commands/
+      http://localhost:1313/grip/docs/commands/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/commands/
+      http://localhost:1313/grip/docs/commands/
       
     
-    
     
       GRIP Plugable External Resources
-      https://bmeg.github.io/grip/docs/gripper/
+      http://localhost:1313/grip/docs/gripper/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/gripper/
+      http://localhost:1313/grip/docs/gripper/
       
     
-    
     
       GRIPPER
-      https://bmeg.github.io/grip/docs/databases/gripper/
+      http://localhost:1313/grip/docs/databases/gripper/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/databases/gripper/
-      GRIPPER GRIP Plugable External Resources are data systems that GRIP can combine together to create graphs.
-Example:
-Drivers: swapi-driver: Gripper: ConfigFile: ./swapi.yaml Graph: swapi ConfigFile - Path to GRIPPER graph map
-Graph - Name of the graph for the mapped external resources.
+      http://localhost:1313/grip/docs/databases/gripper/
+      <h1 id="gripper">GRIPPER</h1>
<p>GRIP Plugable External Resources are data systems that GRIP can combine together
to create graphs.</p>
<p>Example:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-yaml" data-lang="yaml"><span style="display:flex;"><span><span style="color:#f92672">Drivers</span>:
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">swapi-driver</span>:
</span></span><span style="display:flex;"><span>    <span style="color:#f92672">Gripper</span>:
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">ConfigFile</span>: <span style="color:#ae81ff">./swapi.yaml</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">Graph</span>: <span style="color:#ae81ff">swapi</span>
</span></span></code></pre></div><p><code>ConfigFile</code> - Path to GRIPPER graph map</p>
<p><code>Graph</code> - Name of the graph for the mapped external resources.</p>
     
-    
     
       Intro
-      https://bmeg.github.io/grip/docs/gripper/gripper/
+      http://localhost:1313/grip/docs/gripper/gripper/
+      Mon, 01 Jan 0001 00:00:00 +0000
+      http://localhost:1313/grip/docs/gripper/gripper/
+      <h1 id="gripper">GRIPPER</h1>
<h2 id="grip-plugin-external-resources">GRIP Plugin External Resources</h2>
<p>GRIP Plugin External Resources (GRIPPERs) are GRIP drivers that take external
resources and allow GRIP to access them are part of a unified graph.
To integrate new resources into the graph, you
first deploy griper proxies that plug into the external resources. They are unique
and configured to access specific resources. These provide a view into external
resources as a series of document collections. For example, an SQL gripper would
plug into an SQL server and provide the tables as a set of collections with each
every row a document. A gripper is written as a gRPC server.</p>
+    
+    
+      Iteration
+      http://localhost:1313/grip/docs/queries/iterations/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/gripper/gripper/
-      GRIPPER GRIP Plugin External Resources GRIP Plugin External Resources (GRIPPERs) are GRIP drivers that take external resources and allow GRIP to access them are part of a unified graph. To integrate new resources into the graph, you first deploy griper proxies that plug into the external resources. They are unique and configured to access specific resources. These provide a view into external resources as a series of document collections. For example, an SQL gripper would plug into an SQL server and provide the tables as a set of collections with each every row a document.
+      http://localhost:1313/grip/docs/queries/iterations/
+      <h1 id="iteration-api">Iteration API</h1>
<p>A common operation in graph search is the ability to iterative repeat a search pattern.
For example, a &lsquo;friend of a friend&rsquo; search may become a &lsquo;friend of a friend of a friend&rsquo; search.</p>
<p>In the GripQL language cycles, iterations and conditional operations are encoded using
&lsquo;mark&rsquo; and &lsquo;jump&rsquo; based interface. This operations are similar to using a &lsquo;goto&rsquo;
statement in a traditional programming language. While more primitive than the
repeat mechanisms seen in Gremlin, this pattern allows for a much more simple
query compilation and implementation.</p>
     
-    
     
       Jobs API
-      https://bmeg.github.io/grip/docs/queries/jobs_api/
+      http://localhost:1313/grip/docs/queries/jobs_api/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/queries/jobs_api/
-      Jobs API Not all queries return instantaneously, additionally some queries elements are used repeatedly. The query Jobs API provides a mechanism to submit graph traversals that will be evaluated asynchronously and can be retrieved at a later time.
-Submitting a job job = G.query().V().hasLabel(&quot;Planet&quot;).out().submit() Getting job status jinfo = G.getJob(job[&quot;id&quot;]) Example job info:
-{ &#34;id&#34;: &#34;job-326392951&#34;, &#34;graph&#34;: &#34;test_graph_qd7rs7&#34;, &#34;state&#34;: &#34;COMPLETE&#34;, &#34;count&#34;: &#34;12&#34;, &#34;query&#34;: [{&#34;v&#34;: []}, {&#34;hasLabel&#34;: [&#34;Planet&#34;]}, {&#34;as&#34;: &#34;a&#34;}, {&#34;out&#34;: []}], &#34;timestamp&#34;: &#34;2021-03-30T23:12:01-07:00&#34; } Reading job results for row in G.
+      http://localhost:1313/grip/docs/queries/jobs_api/
+      <h1 id="jobs-api">Jobs API</h1>
<p>Not all queries return instantaneously, additionally some queries elements are used
repeatedly. The query Jobs API provides a mechanism to submit graph traversals
that will be evaluated asynchronously and can be retrieved at a later time.</p>
<h3 id="submitting-a-job">Submitting a job</h3>
<pre tabindex="0"><code>job = G.query().V().hasLabel(&#34;Planet&#34;).out().submit()
</code></pre><h3 id="getting-job-status">Getting job status</h3>
<pre tabindex="0"><code>jinfo = G.getJob(job[&#34;id&#34;])
</code></pre><p>Example job info:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-json" data-lang="json"><span style="display:flex;"><span>{
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">&#34;id&#34;</span>: <span style="color:#e6db74">&#34;job-326392951&#34;</span>,
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">&#34;graph&#34;</span>: <span style="color:#e6db74">&#34;test_graph_qd7rs7&#34;</span>,
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">&#34;state&#34;</span>: <span style="color:#e6db74">&#34;COMPLETE&#34;</span>,
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">&#34;count&#34;</span>: <span style="color:#e6db74">&#34;12&#34;</span>,
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">&#34;query&#34;</span>: [{<span style="color:#f92672">&#34;v&#34;</span>: []}, {<span style="color:#f92672">&#34;hasLabel&#34;</span>: [<span style="color:#e6db74">&#34;Planet&#34;</span>]}, {<span style="color:#f92672">&#34;as&#34;</span>: <span style="color:#e6db74">&#34;a&#34;</span>}, {<span style="color:#f92672">&#34;out&#34;</span>: []}],
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">&#34;timestamp&#34;</span>: <span style="color:#e6db74">&#34;2021-03-30T23:12:01-07:00&#34;</span>
</span></span><span style="display:flex;"><span>}
</span></span></code></pre></div><h3 id="reading-job-results">Reading job results</h3>
<pre tabindex="0"><code>for row in G.readJob(job[&#34;id&#34;]):
   print(row)
</code></pre><h3 id="search-for-jobs">Search for jobs</h3>
<p>Find jobs that match the prefix of the current request (example should find job from G.query().V().hasLabel(&ldquo;Planet&rdquo;).out())</p>
     
-    
     
       list
-      https://bmeg.github.io/grip/docs/commands/list/
+      http://localhost:1313/grip/docs/commands/list/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/commands/list/
-      grip list graphs grip list graphs 
+      http://localhost:1313/grip/docs/commands/list/
+      <pre tabindex="0"><code>grip list
</code></pre><h1 id="graphs">graphs</h1>
<pre tabindex="0"><code>grip list graphs
</code></pre>
     
-    
     
       MongoDB
-      https://bmeg.github.io/grip/docs/databases/mongo/
+      http://localhost:1313/grip/docs/databases/mongo/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/databases/mongo/
-      MongoDB GRIP supports storing vertices and edges in MongoDB.
-Config:
-Default: mongo Drivers: mongo: MongoDB: URL: &#34;mongodb://localhost:27000&#34; DBName: &#34;gripdb&#34; Username: &#34;&#34; Password: &#34;&#34; UseCorePipeline: False BatchSize: 0 UseCorePipeline - Default is to use Mongo pipeline API to do graph traversals. By enabling UseCorePipeline, GRIP will do the traversal logic itself, only using Mongo for graph storage.
-BatchSize - For core engine operations, GRIP dispatches element lookups in batches to minimize query overhead.
+      http://localhost:1313/grip/docs/databases/mongo/
+      <h1 id="mongodb">MongoDB</h1>
<p>GRIP supports storing vertices and edges in <a href="https://www.mongodb.com/">MongoDB</a>.</p>
<p>Config:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-yaml" data-lang="yaml"><span style="display:flex;"><span><span style="color:#f92672">Default</span>: <span style="color:#ae81ff">mongo</span>
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span><span style="color:#f92672">Drivers</span>:
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">mongo</span>:
</span></span><span style="display:flex;"><span>    <span style="color:#f92672">MongoDB</span>:
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">URL</span>: <span style="color:#e6db74">&#34;mongodb://localhost:27000&#34;</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">DBName</span>: <span style="color:#e6db74">&#34;gripdb&#34;</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">Username</span>: <span style="color:#e6db74">&#34;&#34;</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">Password</span>: <span style="color:#e6db74">&#34;&#34;</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">UseCorePipeline</span>: <span style="color:#66d9ef">False</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">BatchSize</span>: <span style="color:#ae81ff">0</span>
</span></span></code></pre></div><p><code>UseCorePipeline</code> - Default is to use Mongo pipeline API to do graph traversals.
By enabling <code>UseCorePipeline</code>, GRIP will do the traversal logic itself, only using
Mongo for graph storage.</p>
<p><code>BatchSize</code> - For core engine operations, GRIP dispatches element lookups in
batches to minimize query overhead. If missing from config file (which defaults to 0)
the engine will default to 1000.</p>
     
-    
     
       mongoload
-      https://bmeg.github.io/grip/docs/commands/mongoload/
+      http://localhost:1313/grip/docs/commands/mongoload/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/commands/mongoload/
-      grip mongoload 
+      http://localhost:1313/grip/docs/commands/mongoload/
+      <pre tabindex="0"><code>grip mongoload
</code></pre>
     
-    
     
       Operations
-      https://bmeg.github.io/grip/docs/queries/operations/
+      http://localhost:1313/grip/docs/queries/operations/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/queries/operations/
-      Start a Traversal .V([ids]) Start query from Vertex
-G.query().V() Returns all vertices in graph
-G.query().V([&#34;vertex1]&#34;) Returns:
-{&#34;gid&#34; : &#34;vertex1&#34;, &#34;label&#34;:&#34;TestVertex&#34;, &#34;data&#34;:{}} .E([ids]) Start query from Edge
-G.query().E() Returns all edges in graph
-G.query().E([&#34;edge1&#34;]) Returns:
-{&#34;gid&#34; : &#34;edge1&#34;, &#34;label&#34;:&#34;TestEdge&#34;, From: &#34;vertex1&#34;, To: &#34;vertex2&#34;, data&#34;:{}} Traverse the graph .in_(), inV() Following incoming edges. Optional argument is the edge label (or list of labels) that should be followed. If no argument is provided, all incoming edges.
+      http://localhost:1313/grip/docs/queries/operations/
+      <h1 id="start-a-traversal">Start a Traversal</h1>
<h2 id="vids">.V([ids])</h2>
<p>Start query from Vertex</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span>G<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>V()
</span></span></code></pre></div><p>Returns all vertices in graph</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span>G<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>V([<span style="color:#e6db74">&#34;vertex1&#34;</span>])
</span></span></code></pre></div><p>Returns:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-json" data-lang="json"><span style="display:flex;"><span>{<span style="color:#f92672">&#34;gid&#34;</span> : <span style="color:#e6db74">&#34;vertex1&#34;</span>, <span style="color:#f92672">&#34;label&#34;</span>:<span style="color:#e6db74">&#34;TestVertex&#34;</span>, <span style="color:#f92672">&#34;data&#34;</span>:{}}
</span></span></code></pre></div><h2 id="eids">.E([ids])</h2>
<p>Start query from Edge</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span>G<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>E()
</span></span></code></pre></div><p>Returns all edges in graph</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span>G<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>E([<span style="color:#e6db74">&#34;edge1&#34;</span>])
</span></span></code></pre></div><p>Returns:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-json" data-lang="json"><span style="display:flex;"><span>{<span style="color:#f92672">&#34;gid&#34;</span> : <span style="color:#e6db74">&#34;edge1&#34;</span>, <span style="color:#f92672">&#34;label&#34;</span>:<span style="color:#e6db74">&#34;TestEdge&#34;</span>, <span style="color:#f92672">&#34;from&#34;</span>: <span style="color:#e6db74">&#34;vertex1&#34;</span>, <span style="color:#f92672">&#34;to&#34;</span>: <span style="color:#e6db74">&#34;vertex2&#34;</span>, <span style="color:#f92672">&#34;data&#34;</span>:{}}
</span></span></code></pre></div><h1 id="traverse-the-graph">Traverse the graph</h1>
<h2 id="in_-inv">.in_(), inV()</h2>
<p>Following incoming edges. Optional argument is the edge label (or list of labels) that should be followed. If no argument is provided, all incoming edges.</p>
<h2 id="out-outv">.out(), .outV()</h2>
<p>Following outgoing edges. Optional argument is the edge label (or list of labels) that should be followed. If no argument is provided, all outgoing edges.</p>
     
-    
     
       Overview
-      https://bmeg.github.io/grip/docs/
+      http://localhost:1313/grip/docs/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/
-      Overview GRIP stands for GRaph Integration Platform. It provides a graph interface on top of a variety of existing database technologies including: MongoDB, Elasticsearch, PostgreSQL, MySQL, MariaDB, Badger, and LevelDB.
-Properties of an GRIP graph:
- Both vertices and edges in a graph can have any number of properties associated with them. There are many types of vertices and edges in a graph. Two vertices may have many types of edges connecting them, thus reflecting a myriad of relationship types.
+      http://localhost:1313/grip/docs/
+      <h1 id="overview">Overview</h1>
<p>GRIP stands for GRaph Integration Platform. It provides a graph interface on top of a variety of existing database technologies including:
MongoDB, PostgreSQL, MySQL, MariaDB, Badger, and LevelDB.</p>
<p>Properties of an GRIP graph:</p>
<ul>
<li>Both vertices and edges in a graph can have any number of properties associated with them.</li>
<li>There are many types of vertices and edges in a graph. Two vertices may have many types of edges
connecting them, thus reflecting a myriad of relationship types.</li>
<li>Edges in the graph are directed, meaning they have a source and destination.</li>
</ul>
<p>GRIP also provides a query API for the traversing, analyzing and manipulating your graphs. Its syntax is inspired by
<a href="http://tinkerpop.apache.org/">Apache TinkerPop</a>. Learn more <a href="http://localhost:1313/grip/docs/queries/getting_started">here</a> about GRIP and its
application for querying the Bio Medical Evidence Graph (<a href="https://bmeg.io">BMEG</a>).</p>
     
-    
     
       PostgreSQL
-      https://bmeg.github.io/grip/docs/databases/psql/
+      http://localhost:1313/grip/docs/databases/psql/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/databases/psql/
-      PostgreSQL GRIP supports storing vertices and edges in PostgreSQL.
-Config:
-Default: psql Drivers: psql: PSQL: Host: localhost Port: 15432 User: &#34;&#34; Password: &#34;&#34; DBName: &#34;grip&#34; SSLMode: disable 
+      http://localhost:1313/grip/docs/databases/psql/
+      <h1 id="postgresql">PostgreSQL</h1>
<p>GRIP supports storing vertices and edges in <a href="https://www.postgresql.org/">PostgreSQL</a>.</p>
<p>Config:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-yaml" data-lang="yaml"><span style="display:flex;"><span><span style="color:#f92672">Default</span>: <span style="color:#ae81ff">psql</span>
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span><span style="color:#f92672">Drivers</span>:
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">psql</span>:
</span></span><span style="display:flex;"><span>    <span style="color:#f92672">PSQL</span>:
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">Host</span>: <span style="color:#ae81ff">localhost</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">Port</span>: <span style="color:#ae81ff">15432</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">User</span>: <span style="color:#e6db74">&#34;&#34;</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">Password</span>: <span style="color:#e6db74">&#34;&#34;</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">DBName</span>: <span style="color:#e6db74">&#34;grip&#34;</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">SSLMode</span>: <span style="color:#ae81ff">disable</span>
</span></span></code></pre></div>
     
-    
     
       query
-      https://bmeg.github.io/grip/docs/commands/query/
+      http://localhost:1313/grip/docs/commands/query/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/commands/query/
-      grip query &lt;graph&gt; &lt;query&gt; Run a query on a graph.
+      http://localhost:1313/grip/docs/commands/query/
+      <pre tabindex="0"><code>grip query &lt;graph&gt; &lt;query&gt;
</code></pre><p>Run a query on a graph.</p>
     
-    
     
       Query a Graph
-      https://bmeg.github.io/grip/docs/queries/
+      http://localhost:1313/grip/docs/queries/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/queries/
+      http://localhost:1313/grip/docs/queries/
       
     
-    
     
       Referencing Fields
-      https://bmeg.github.io/grip/docs/queries/jsonpath/
+      http://localhost:1313/grip/docs/queries/jsonpath/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/queries/jsonpath/
-      Referencing Vertex/Edge Properties Several operations (where, fields, render, etc.) reference properties of the vertices/edges during the traversal. GRIP uses a variation on JSONPath syntax as described in http://goessner.net/articles/ to reference fields during traversals.
-The following query:
-O.query().V([&quot;ENSG00000012048&quot;]).as_(&quot;gene&quot;).out(&quot;variant&quot;) Starts at vertex ENSG00000012048 and marks as gene:
-{ &quot;gid&quot;: &quot;ENSG00000012048&quot;, &quot;label&quot;: &quot;gene&quot;, &quot;data&quot;: { &quot;symbol&quot;: { &quot;ensembl&quot;: &quot;ENSG00000012048&quot;, &quot;hgnc&quot;: 1100, &quot;entrez&quot;: 672, &quot;hugo&quot;: &quot;BRCA1&quot; } &quot;transcipts&quot;: [&quot;ENST00000471181.7&quot;, &quot;ENST00000357654.8&quot;, &quot;ENST00000493795.5&quot;] } } as &ldquo;gene&rdquo; and traverses the graph to:
+      http://localhost:1313/grip/docs/queries/jsonpath/
+      <h1 id="referencing-vertexedge-properties">Referencing Vertex/Edge Properties</h1>
<p>Several operations (where, fields, render, etc.) reference properties of the vertices/edges during the traversal.
GRIP uses a variation on JSONPath syntax as described in <a href="http://goessner.net/articles/">http://goessner.net/articles/</a> to reference fields during traversals.</p>
<p>The following query:</p>
<pre tabindex="0"><code>O.query().V([&#34;ENSG00000012048&#34;]).as_(&#34;gene&#34;).out(&#34;variant&#34;)
</code></pre><p>Starts at vertex <code>ENSG00000012048</code> and marks as <code>gene</code>:</p>
<pre tabindex="0"><code>{
  &#34;gid&#34;: &#34;ENSG00000012048&#34;,
  &#34;label&#34;: &#34;gene&#34;,
  &#34;data&#34;: {
    &#34;symbol&#34;: {
      &#34;ensembl&#34;: &#34;ENSG00000012048&#34;,
      &#34;hgnc&#34;: 1100,
      &#34;entrez&#34;: 672,
      &#34;hugo&#34;: &#34;BRCA1&#34;
    }
    &#34;transcipts&#34;: [&#34;ENST00000471181.7&#34;, &#34;ENST00000357654.8&#34;, &#34;ENST00000493795.5&#34;]
  }
}
</code></pre><p>as &ldquo;gene&rdquo; and traverses the graph to:</p>
     
-    
     
       Security
-      https://bmeg.github.io/grip/docs/security/
+      http://localhost:1313/grip/docs/security/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/security/
+      http://localhost:1313/grip/docs/security/
       
     
-    
     
       server
-      https://bmeg.github.io/grip/docs/commands/server/
+      http://localhost:1313/grip/docs/commands/server/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/commands/server/
-      grip server The server command starts up a graph server and waits for incoming requests.
-Default Configuration If invoked with no arguments or config files, GRIP will start up in embedded mode, using a Badger based graph driver.
-Networking By default the GRIP server operates on 2 ports, 8201 is the HTTP based interface. Port 8202 is a GRPC based interface. Python, R and Javascript clients are designed to connect to the HTTP interface on 8201.
+      http://localhost:1313/grip/docs/commands/server/
+      <pre tabindex="0"><code>grip server
</code></pre><p>The server command starts up a graph server and waits for incoming requests.</p>
<h2 id="default-configuration">Default Configuration</h2>
<p>If invoked with no arguments or config files, GRIP will start up in embedded mode,
using a Badger based graph driver.</p>
<h2 id="networking">Networking</h2>
<p>By default the GRIP server operates on 2 ports, <code>8201</code> is the HTTP based interface.
Port <code>8202</code> is a GRPC based interface. Python, R and Javascript clients are designed
to connect to the HTTP interface on <code>8201</code>. The <code>grip</code> command will often use
port <code>8202</code> in order to complete operations. For example if you call <code>grip list graphs</code>
it will contact port <code>8202</code>, rather then using the HTTP port. This means that if
you are working with a server that is behind a firewall, and only the HTTP port is
available, then the grip command line program will not be able to issue commands,
even if the server is visible to client libraries.</p>
     
-    
     
       SQL
-      https://bmeg.github.io/grip/docs/databases/sql/
+      http://localhost:1313/grip/docs/databases/sql/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/databases/sql/
-      Connect to an existing SQL database Note: This driver is being superseded by the GRIPPER engine
-GRIP supports modeling an existing SQL database as a graph. GRIP has been tested against PostgreSQL, but should work with MySQL (4.1+) and MariaDB.
-Since GRIP uses Go's database/sql package, we could (in thoery) support any SQL databases listed on: https://github.com/golang/go/wiki/SQLDrivers. Open an issue if you would like to request support for your favorite SQL database.
+      http://localhost:1313/grip/docs/databases/sql/
+      <h1 id="connect-to-an-existing-sql-database">Connect to an existing SQL database</h1>
<p>Note: This driver is being superseded by the <a href="http://localhost:1313/grip/docs/gripper/gripper/">GRIPPER engine</a></p>
<p>GRIP supports modeling an existing SQL database as a graph. GRIP has been tested against <a href="https://www.postgresql.org/">PostgreSQL</a>, but should  work with
<a href="https://www.mysql.com/">MySQL</a> (4.1+) and <a href="https://mariadb.org/">MariaDB</a>.</p>
<p>Since GRIP uses Go&rsquo;s <code>database/sql</code> package, we could (in thoery) support any SQL databases listed on:
<a href="https://github.com/golang/go/wiki/SQLDrivers">https://github.com/golang/go/wiki/SQLDrivers</a>. Open an <a href="https://github.com/bmeg/grip/issues/new">issue</a> if you
would like to request support for your favorite SQL database.</p>
<h2 id="configuration-notes">Configuration Notes</h2>
<ul>
<li>
<p><code>DataSourceName</code> is a driver-specific data source name, usually consisting of at least a database name and connection information. Here are links for
to documentation for this field for each supported driver:</p>
     
-    
     
       TCGA RNA Expression
-      https://bmeg.github.io/grip/docs/tutorials/tcga-rna/
+      http://localhost:1313/grip/docs/tutorials/tcga-rna/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/tutorials/tcga-rna/
-      Explore TCGA RNA Expression Data Create the graph
-grip create tcga-rna Get the data
-curl -O http://download.cbioportal.org/gbm_tcga_pub2013.tar.gz tar xvzf gbm_tcga_pub2013.tar.gz Load clinical data
-./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_clinical.txt --row-label 'Donor' Load RNASeq data
-./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_RNA_Seq_v2_expression_median.txt -t --index-col 1 --row-label RNASeq --row-prefix &quot;RNA:&quot; --exclude RNA:Hugo_Symbol Connect RNASeq data to Clinical data
-./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_RNA_Seq_v2_expression_median.txt -t --index-col 1 --no-vertex --edge 'RNA:{_gid}' rna Connect Clinical data to subtypes
-./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_clinical.txt --no-vertex -e &quot;{EXPRESSION_SUBTYPE}&quot; subtype --dst-vertex &quot;{EXPRESSION_SUBTYPE}&quot; Subtype Load Hugo Symbol to EntrezID translation table from RNA matrix annotations
+      http://localhost:1313/grip/docs/tutorials/tcga-rna/
+      <h3 id="explore-tcga-rna-expression-data">Explore TCGA RNA Expression Data</h3>
<p>Create the graph</p>
<pre tabindex="0"><code>grip create tcga-rna
</code></pre><p>Get the data</p>
<pre tabindex="0"><code>curl -O http://download.cbioportal.org/gbm_tcga_pub2013.tar.gz
tar xvzf gbm_tcga_pub2013.tar.gz
</code></pre><p>Load clinical data</p>
<pre tabindex="0"><code>./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_clinical.txt --row-label &#39;Donor&#39;
</code></pre><p>Load RNASeq data</p>
<pre tabindex="0"><code>./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_RNA_Seq_v2_expression_median.txt -t  --index-col 1 --row-label RNASeq --row-prefix &#34;RNA:&#34; --exclude RNA:Hugo_Symbol
</code></pre><p>Connect RNASeq data to Clinical data</p>
<pre tabindex="0"><code>./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_RNA_Seq_v2_expression_median.txt -t  --index-col 1 --no-vertex --edge &#39;RNA:{_gid}&#39; rna
</code></pre><p>Connect Clinical data to subtypes</p>
<pre tabindex="0"><code>./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_clinical.txt --no-vertex -e &#34;{EXPRESSION_SUBTYPE}&#34; subtype --dst-vertex &#34;{EXPRESSION_SUBTYPE}&#34; Subtype
</code></pre><p>Load Hugo Symbol to EntrezID translation table from RNA matrix annotations</p>
     
-    
     
       Tutorials
-      https://bmeg.github.io/grip/docs/tutorials/
+      http://localhost:1313/grip/docs/tutorials/
       Mon, 01 Jan 0001 00:00:00 +0000
-      
-      https://bmeg.github.io/grip/docs/tutorials/
+      http://localhost:1313/grip/docs/tutorials/
       
     
-    
   
-
\ No newline at end of file
+
diff --git a/docs/sitemap.xml b/docs/sitemap.xml
index 156102e0..550d14fa 100644
--- a/docs/sitemap.xml
+++ b/docs/sitemap.xml
@@ -1,162 +1,81 @@
 
 
-  
   
-    https://bmeg.github.io/grip/docs/tutorials/pathway-commons/
-    0
-  
-  
-  
-    https://bmeg.github.io/grip/docs/tutorials/amazon/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/security/basic/
-  
-  
-  
-    https://bmeg.github.io/grip/categories/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/databases/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/developers/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/
-  
-  
-  
-    https://bmeg.github.io/grip/download/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/commands/drop/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/databases/elastic/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/databases/kvstore/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/commands/er/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/gripper/proxy/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/queries/getting_started/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/gripper/graphmodel/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/graphql/graph_schemas/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/graphql/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/graphql/graphql/
-  
-  
-  
-    https://bmeg.github.io/grip/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/commands/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/gripper/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/databases/gripper/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/gripper/gripper/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/queries/jobs_api/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/commands/list/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/databases/mongo/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/commands/mongoload/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/queries/operations/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/databases/psql/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/commands/query/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/queries/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/queries/jsonpath/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/security/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/commands/server/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/databases/sql/
-  
-  
-  
-    https://bmeg.github.io/grip/tags/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/tutorials/tcga-rna/
-  
-  
-  
-    https://bmeg.github.io/grip/docs/tutorials/
-  
-  
-
\ No newline at end of file
+    http://localhost:1313/grip/docs/tutorials/pathway-commons/
+  
+    http://localhost:1313/grip/docs/tutorials/amazon/
+  
+    http://localhost:1313/grip/docs/security/basic/
+  
+    http://localhost:1313/grip/categories/
+  
+    http://localhost:1313/grip/docs/databases/
+  
+    http://localhost:1313/grip/docs/developers/
+  
+    http://localhost:1313/grip/download/
+  
+    http://localhost:1313/grip/docs/commands/drop/
+  
+    http://localhost:1313/grip/docs/databases/kvstore/
+  
+    http://localhost:1313/grip/docs/commands/er/
+  
+    http://localhost:1313/grip/docs/gripper/proxy/
+  
+    http://localhost:1313/grip/docs/queries/getting_started/
+  
+    http://localhost:1313/grip/docs/gripper/graphmodel/
+  
+    http://localhost:1313/grip/docs/graphql/graph_schemas/
+  
+    http://localhost:1313/grip/docs/graphql/
+  
+    http://localhost:1313/grip/docs/graphql/graphql/
+  
+    http://localhost:1313/grip/
+  
+    http://localhost:1313/grip/docs/commands/
+  
+    http://localhost:1313/grip/docs/gripper/
+  
+    http://localhost:1313/grip/docs/databases/gripper/
+  
+    http://localhost:1313/grip/docs/gripper/gripper/
+  
+    http://localhost:1313/grip/docs/queries/iterations/
+  
+    http://localhost:1313/grip/docs/queries/jobs_api/
+  
+    http://localhost:1313/grip/docs/commands/list/
+  
+    http://localhost:1313/grip/docs/databases/mongo/
+  
+    http://localhost:1313/grip/docs/commands/mongoload/
+  
+    http://localhost:1313/grip/docs/queries/operations/
+  
+    http://localhost:1313/grip/docs/
+  
+    http://localhost:1313/grip/docs/databases/psql/
+  
+    http://localhost:1313/grip/docs/commands/query/
+  
+    http://localhost:1313/grip/docs/queries/
+  
+    http://localhost:1313/grip/docs/queries/jsonpath/
+  
+    http://localhost:1313/grip/docs/security/
+  
+    http://localhost:1313/grip/docs/commands/server/
+  
+    http://localhost:1313/grip/docs/databases/sql/
+  
+    http://localhost:1313/grip/tags/
+  
+    http://localhost:1313/grip/docs/tutorials/tcga-rna/
+  
+    http://localhost:1313/grip/docs/tutorials/
+  
+
diff --git a/docs/tags/index.xml b/docs/tags/index.xml
index 4ddab99c..14cbfb1d 100644
--- a/docs/tags/index.xml
+++ b/docs/tags/index.xml
@@ -2,13 +2,10 @@
 
   
     Tags on GRIP
-    https://bmeg.github.io/grip/tags/
+    http://localhost:1313/grip/tags/
     Recent content in Tags on GRIP
-    Hugo -- gohugo.io
+    Hugo
     en-us
-    
-	
-    
-    
+    
   
-
\ No newline at end of file
+
diff --git a/elastic/convert.go b/elastic/convert.go
deleted file mode 100644
index d44afa61..00000000
--- a/elastic/convert.go
+++ /dev/null
@@ -1,51 +0,0 @@
-package elastic
-
-import (
-	"github.com/bmeg/grip/gdbi"
-	"github.com/bmeg/grip/gripql"
-	"google.golang.org/protobuf/types/known/structpb"
-)
-
-// PackVertex take a gdbi vertex and convert it to a mongo doc
-func PackVertex(v *gdbi.Vertex) map[string]interface{} {
-	return map[string]interface{}{
-		"gid":   v.ID,
-		"label": v.Label,
-		"data":  v.Data,
-	}
-}
-
-// PackEdge takes a AQL edge and converts it to a mongo doc
-func PackEdge(e *gdbi.Edge) map[string]interface{} {
-	return map[string]interface{}{
-		"gid":   e.ID,
-		"from":  e.From,
-		"to":    e.To,
-		"label": e.Label,
-		"data":  e.Data,
-	}
-}
-
-// UnpackVertex takes a mongo doc and converts it into an gripql.Vertex
-func UnpackVertex(i map[string]interface{}) *gripql.Vertex {
-	o := &gripql.Vertex{}
-	o.Gid = i["gid"].(string)
-	o.Label = i["label"].(string)
-	if p, ok := i["data"]; ok {
-		o.Data, _ = structpb.NewStruct(p.(map[string]interface{}))
-	}
-	return o
-}
-
-// UnpackEdge takes a mongo doc and convertes it into an gripql.Edge
-func UnpackEdge(i map[string]interface{}) *gripql.Edge {
-	o := &gripql.Edge{}
-	o.Gid = i["gid"].(string)
-	o.Label = i["label"].(string)
-	o.From = i["from"].(string)
-	o.To = i["to"].(string)
-	if d, ok := i["data"]; ok {
-		o.Data, _ = structpb.NewStruct(d.(map[string]interface{}))
-	}
-	return o
-}
diff --git a/elastic/graph.go b/elastic/graph.go
deleted file mode 100644
index f23e9af4..00000000
--- a/elastic/graph.go
+++ /dev/null
@@ -1,888 +0,0 @@
-package elastic
-
-import (
-	"context"
-	"encoding/json"
-	"fmt"
-	"io"
-	"time"
-
-	"github.com/bmeg/grip/engine/core"
-	"github.com/bmeg/grip/gdbi"
-	"github.com/bmeg/grip/gripql"
-	"github.com/bmeg/grip/log"
-	"github.com/bmeg/grip/timestamp"
-	"github.com/bmeg/grip/util"
-	"golang.org/x/sync/errgroup"
-	"google.golang.org/protobuf/encoding/protojson"
-	elastic "gopkg.in/olivere/elastic.v5"
-)
-
-var excludeData = elastic.NewFetchSourceContext(true).Exclude("data")
-
-// Graph is a graph database backended by elastic search
-type Graph struct {
-	ts          *timestamp.Timestamp
-	client      *elastic.Client
-	graph       string
-	vertexIndex string
-	edgeIndex   string
-	// Used to batch queries from incoming channels
-	batchSize int
-	// Not recommended for production. Refresh the relevant primary and replica shards (not the
-	// whole index) immediately after the operation occurs, so that the updated
-	// document appears in search results immediately.
-	synchronous bool
-	pageSize    int
-}
-
-// Compiler returns a query compiler that will use elastic search as a backend
-func (es *Graph) Compiler() gdbi.Compiler {
-	return core.NewCompiler(es, core.IndexStartOptimize) //TODO: probably a better optimizer for vertex label search
-}
-
-// GetTimestamp returns the change timestamp of the current graph
-func (es *Graph) GetTimestamp() string {
-	return es.ts.Get(es.graph)
-}
-
-// AddEdge adds an edge to the graph, if the id is not "" and in already exists
-// in the graph, it is replaced
-func (es *Graph) AddEdge(edges []*gdbi.Edge) error {
-	ctx := context.Background()
-
-	bulkRequest := es.client.Bulk()
-	if es.synchronous {
-		bulkRequest = bulkRequest.Refresh("true")
-	}
-	for _, e := range edges {
-		if e.ID == "" {
-			return fmt.Errorf("edge gid cannot be an empty string")
-		}
-		pe := PackEdge(e)
-		script := elastic.NewScript(`ctx._source.gid = params.gid;
-                                 ctx._source.label = params.label;
-                                 ctx._source.from = params.from;
-                                 ctx._source.to = params.to;
-                                 ctx._source.data = params.data;`).Params(pe)
-		req := elastic.NewBulkUpdateRequest().
-			Index(es.edgeIndex).
-			Type("edge").
-			Id(e.ID).
-			Script(script).
-			Upsert(pe)
-		bulkRequest = bulkRequest.Add(req)
-	}
-	_, err := bulkRequest.Do(ctx)
-	if err != nil {
-		return fmt.Errorf("failed to add edge: %s", err)
-	}
-	es.ts.Touch(es.graph)
-	return nil
-}
-
-// AddVertex adds an edge to the graph, if the id is not "" and in already exists
-// in the graph, it is replaced
-func (es *Graph) AddVertex(vertices []*gdbi.Vertex) error {
-	ctx := context.Background()
-
-	bulkRequest := es.client.Bulk()
-	if es.synchronous {
-		bulkRequest = bulkRequest.Refresh("true")
-	}
-	for _, v := range vertices {
-		if v.ID == "" {
-			return fmt.Errorf("vertex gid cannot be an empty string")
-		}
-		pv := PackVertex(v)
-		script := elastic.NewScript(`ctx._source.gid = params.gid;
-                                 ctx._source.label = params.label;
-                                 ctx._source.data = params.data;`).Params(pv)
-		req := elastic.NewBulkUpdateRequest().
-			Index(es.vertexIndex).
-			Type("vertex").
-			Id(v.ID).
-			Script(script).
-			Upsert(pv)
-		bulkRequest = bulkRequest.Add(req)
-	}
-	_, err := bulkRequest.Do(ctx)
-	if err != nil {
-		return fmt.Errorf("failed to add vertex: %s", err)
-	}
-	es.ts.Touch(es.graph)
-	return nil
-}
-
-func (es *Graph) BulkAdd(stream <-chan *gdbi.GraphElement) error {
-	return util.StreamBatch(stream, 50, es.graph, es.AddVertex, es.AddEdge)
-}
-
-func (es *Graph) BulkDel(Data *gdbi.DeleteData) error {
-	for _, v := range Data.Edges {
-		if err := es.DelEdge(v); err != nil {
-			return err
-		}
-	}
-	for _, v := range Data.Vertices {
-		if err := es.DelVertex(v); err != nil {
-			return err
-		}
-	}
-	return nil
-}
-
-// DelEdge deletes edge `eid`
-func (es *Graph) DelEdge(eid string) error {
-	ctx := context.Background()
-	op := es.client.Delete()
-	if es.synchronous {
-		op = op.Refresh("true")
-	}
-	_, err := op.Index(es.edgeIndex).Type("edge").Id(eid).Do(ctx)
-	if err != nil {
-		return fmt.Errorf("failed to delete edge %s: %s", eid, err)
-	}
-	es.ts.Touch(es.graph)
-	return nil
-}
-
-// deleteConnectedEdges deletes edges where `from` or `to` equal `vid`
-func (es *Graph) deleteConnectedEdges(vid string) error {
-	ctx := context.Background()
-
-	op := es.client.DeleteByQuery()
-	if es.synchronous {
-		op = op.Refresh("true")
-	}
-	op = op.Index(es.edgeIndex).Type("edge").Query(
-		elastic.NewBoolQuery().Should(elastic.NewTermQuery("from", vid), elastic.NewTermQuery("to", vid)),
-	)
-	_, err := op.Do(ctx)
-	if err != nil {
-		return fmt.Errorf("failed to delete edge(s): %s", err)
-	}
-	es.ts.Touch(es.graph)
-	return nil
-}
-
-// DelVertex deletes vertex `vid` and all adjacent edges
-func (es *Graph) DelVertex(vid string) error {
-	ctx := context.Background()
-	op := es.client.Delete()
-	if es.synchronous {
-		op = op.Refresh("true")
-	}
-	_, err := op.Index(es.vertexIndex).Type("vertex").Id(vid).Do(ctx)
-	if err != nil {
-		return fmt.Errorf("failed to delete vertex %s: %s", vid, err)
-	}
-	es.ts.Touch(es.graph)
-	err = es.deleteConnectedEdges(vid)
-	if err != nil {
-		return err
-	}
-	return nil
-}
-
-// GetEdge gets a specific edge
-func (es *Graph) GetEdge(id string, load bool) *gdbi.Edge {
-	ctx := context.Background()
-
-	g := es.client.Get().Index(es.edgeIndex).Id(id)
-	if !load {
-		g = g.FetchSource(true).FetchSourceContext(excludeData)
-	}
-
-	res, err := g.Do(ctx)
-	if err != nil {
-		log.WithFields(log.Fields{"error": err}).Error("GetEdge")
-		return nil
-	}
-
-	edge := &gripql.Edge{}
-	err = protojson.Unmarshal(*res.Source, edge)
-	if err != nil {
-		log.WithFields(log.Fields{"error": err}).Error("GetEdge: unmarshal")
-		return nil
-	}
-	o := gdbi.NewElementFromEdge(edge)
-	o.Loaded = load
-	return o
-}
-
-// GetVertex gets vertex `id`
-func (es *Graph) GetVertex(id string, load bool) *gdbi.Vertex {
-	ctx := context.Background()
-
-	g := es.client.Get().Index(es.vertexIndex).Id(id)
-	if !load {
-		g = g.FetchSource(true).FetchSourceContext(excludeData)
-	}
-
-	res, err := g.Do(ctx)
-	if err != nil {
-		log.WithFields(log.Fields{"error": err}).Error("GetVertex")
-		return nil
-	}
-
-	vertex := &gripql.Vertex{}
-	err = protojson.Unmarshal(*res.Source, vertex)
-	if err != nil {
-		log.WithFields(log.Fields{"error": err}).Error("GetVertex: unmarshal")
-		return nil
-	}
-
-	o := gdbi.NewElementFromVertex(vertex)
-	o.Loaded = load
-	return o
-}
-
-// GetEdgeList produces a channel of all edges in the graph
-func (es *Graph) GetEdgeList(ctx context.Context, load bool) <-chan *gdbi.Edge {
-	o := make(chan *gdbi.Edge, 100)
-
-	// 1st goroutine sends individual hits to channel.
-	hits := make(chan json.RawMessage, es.pageSize)
-	g, ctx := errgroup.WithContext(ctx)
-	g.Go(func() error {
-		defer close(hits)
-		scroll := es.client.Scroll(es.edgeIndex).Sort("gid", true).Size(es.pageSize)
-		if !load {
-			scroll = scroll.FetchSource(true).FetchSourceContext(excludeData)
-		}
-		for {
-			results, err := scroll.Do(ctx)
-			if err == io.EOF {
-				return nil // all results retrieved
-			}
-			if err != nil {
-				return fmt.Errorf("scroll call failed: %v", err)
-			}
-
-			// Send the hits to the hits channel
-			for _, hit := range results.Hits.Hits {
-				hits <- *hit.Source
-			}
-		}
-	})
-
-	// 2nd goroutine receives hits and deserializes them.
-	g.Go(func() error {
-		for hit := range hits {
-			edge := &gripql.Edge{}
-			err := protojson.Unmarshal(hit, edge)
-			if err != nil {
-				return err
-			}
-			i := gdbi.NewElementFromEdge(edge)
-			i.Loaded = load
-			o <- i
-		}
-		return nil
-	})
-
-	// Check whether any goroutines failed.
-	go func() {
-		defer close(o)
-		if err := g.Wait(); err != nil {
-			log.WithFields(log.Fields{"error": err}).Error("GetEdgeList")
-		}
-	}()
-
-	return o
-}
-
-// GetVertexList produces a channel of all vertices in the graph
-func (es *Graph) GetVertexList(ctx context.Context, load bool) <-chan *gdbi.Vertex {
-	o := make(chan *gdbi.Vertex, es.pageSize)
-
-	// 1st goroutine sends individual hits to channel.
-	hits := make(chan json.RawMessage, es.pageSize)
-	g, ctx := errgroup.WithContext(ctx)
-	g.Go(func() error {
-		defer close(hits)
-		scroll := es.client.Scroll(es.vertexIndex).Sort("gid", true).Size(es.pageSize)
-		if !load {
-			scroll = scroll.FetchSource(true).FetchSourceContext(excludeData)
-		}
-		for {
-			results, err := scroll.Do(ctx)
-			if err == io.EOF {
-				return nil // all results retrieved
-			}
-			if err != nil {
-				return fmt.Errorf("scroll call failed: %v", err)
-			}
-
-			// Send the hits to the hits channel
-			for _, hit := range results.Hits.Hits {
-				hits <- *hit.Source
-			}
-		}
-	})
-
-	// 2nd goroutine receives hits and deserializes them.
-	g.Go(func() error {
-		for hit := range hits {
-			vertex := &gripql.Vertex{}
-			err := protojson.Unmarshal(hit, vertex)
-			if err != nil {
-				return fmt.Errorf("failed to unmarshal vertex: %v", err)
-			}
-			i := gdbi.NewElementFromVertex(vertex)
-			i.Loaded = load
-			o <- i
-		}
-		return nil
-	})
-
-	// Check whether any goroutines failed.
-	go func() {
-		defer close(o)
-		if err := g.Wait(); err != nil {
-			log.WithFields(log.Fields{"error": err}).Error("GetVertexList")
-		}
-	}()
-
-	return o
-}
-
-// GetVertexChannel get a channel that returns all vertices in a graph
-func (es *Graph) GetVertexChannel(ctx context.Context, req chan gdbi.ElementLookup, load bool) chan gdbi.ElementLookup {
-	g, ctx := errgroup.WithContext(ctx)
-
-	// Create query batches
-	batches := gdbi.LookupBatcher(req, es.pageSize, time.Microsecond)
-
-	// Find all vertices
-	o := make(chan gdbi.ElementLookup, es.pageSize)
-	g.Go(func() error {
-		for batch := range batches {
-			idBatch := make([]string, 0, len(batch))
-			batchMap := make(map[string][]gdbi.ElementLookup, len(batch))
-			signals := []gdbi.ElementLookup{}
-			for i := range batch {
-				if batch[i].IsSignal() {
-					signals = append(signals, batch[i])
-				} else {
-					idBatch = append(idBatch, batch[i].ID)
-					batchMap[batch[i].ID] = append(batchMap[batch[i].ID], batch[i])
-				}
-			}
-			if len(idBatch) > 0 {
-				q := es.client.Search().Index(es.vertexIndex).Size(es.pageSize)
-				q = q.Query(elastic.NewBoolQuery().Must(elastic.NewIdsQuery().Ids(idBatch...)))
-				if !load {
-					q = q.FetchSource(true).FetchSourceContext(elastic.NewFetchSourceContext(true).Exclude("data"))
-				}
-
-				for hit := range paginateQuery(ctx, q, es.pageSize) {
-					// Deserialize
-					vertex := &gripql.Vertex{}
-					err := protojson.Unmarshal(*hit.Source, vertex)
-					if err != nil {
-						return fmt.Errorf("failed to unmarshal vertex: %s", err)
-					}
-					r := batchMap[vertex.Gid]
-					for _, ri := range r {
-						ri.Vertex = gdbi.NewElementFromVertex(vertex)
-						o <- ri
-					}
-				}
-			}
-			for i := range signals {
-				o <- signals[i]
-			}
-		}
-
-		return nil
-	})
-
-	// Check whether any goroutines failed.
-	go func() {
-		defer close(o)
-		if err := g.Wait(); err != nil {
-			log.WithFields(log.Fields{"error": err}).Error("GetVertexChannel")
-		}
-	}()
-
-	return o
-}
-
-// GetOutChannel gets channel of all vertices connected to element via outgoing edge
-func (es *Graph) GetOutChannel(ctx context.Context, req chan gdbi.ElementLookup, load bool, emitNull bool, edgeLabels []string) chan gdbi.ElementLookup {
-	g, ctx := errgroup.WithContext(ctx)
-
-	// Create query batches
-	batches := gdbi.LookupBatcher(req, es.pageSize, time.Microsecond)
-
-	// Find all outgoing edges
-	edgeBatches := make(chan []gdbi.ElementLookup, es.pageSize)
-	g.Go(func() error {
-		defer close(edgeBatches)
-		for batch := range batches {
-			idBatch := make([]interface{}, 0, len(batch))
-			batchMap := make(map[string][]gdbi.ElementLookup, len(batch))
-			batchMapReturnCount := make(map[string]int)
-			signals := []gdbi.ElementLookup{}
-			for i := range batch {
-				if batch[i].IsSignal() {
-					signals = append(signals, batch[i])
-				} else {
-					idBatch = append(idBatch, batch[i].ID)
-					batchMap[batch[i].ID] = append(batchMap[batch[i].ID], batch[i])
-					batchMapReturnCount[batch[i].ID] = 0
-				}
-			}
-			b := []gdbi.ElementLookup{}
-			if len(idBatch) > 0 {
-				q := es.client.Search().Index(es.edgeIndex)
-				qParts := []elastic.Query{elastic.NewTermsQuery("from", idBatch...)}
-				if len(edgeLabels) > 0 {
-					labels := make([]interface{}, len(edgeLabels))
-					for i, v := range edgeLabels {
-						labels[i] = v
-					}
-					qParts = append(qParts, elastic.NewTermsQuery("label", labels...))
-				}
-				q = q.Query(elastic.NewBoolQuery().Must(qParts...))
-				q = q.FetchSource(true).FetchSourceContext(elastic.NewFetchSourceContext(true).Include("from", "to"))
-				q = q.Sort("gid", true).Size(es.pageSize)
-
-				for hit := range paginateQuery(ctx, q, es.pageSize) {
-					// Deserialize
-					edge := &gripql.Edge{}
-					err := protojson.Unmarshal(*hit.Source, edge)
-					if err != nil {
-						return fmt.Errorf("failed to unmarshal edge: %s", err)
-					}
-					r := batchMap[edge.From]
-					batchMapReturnCount[edge.From]++
-					for _, ri := range r {
-						ri.Vertex = &gdbi.Vertex{ID: edge.To}
-						b = append(b, ri)
-					}
-				}
-			}
-			if emitNull {
-				for id, count := range batchMapReturnCount {
-					if count == 0 {
-						r := batchMap[id]
-						for _, ri := range r {
-							ri.Vertex = nil
-							b = append(b, ri)
-						}
-					}
-				}
-			}
-			for i := range signals {
-				b = append(b, signals[i])
-			}
-			edgeBatches <- b
-		}
-
-		return nil
-	})
-
-	// Collect all identified vertices
-	o := make(chan gdbi.ElementLookup, es.pageSize)
-	g.Go(func() error {
-		for batch := range edgeBatches {
-			idBatch := make([]string, 0, len(batch))
-			batchMap := make(map[string][]gdbi.ElementLookup, len(batch))
-			signals := []gdbi.ElementLookup{}
-			for i := range batch {
-				if batch[i].IsSignal() {
-					signals = append(signals, batch[i])
-				} else {
-					if batch[i].Vertex != nil {
-						idBatch = append(idBatch, batch[i].Vertex.Get().ID)
-						batchMap[batch[i].Vertex.Get().ID] = append(batchMap[batch[i].Vertex.Get().ID], batch[i])
-					} else if emitNull {
-						o <- batch[i]
-					}
-				}
-			}
-			if len(idBatch) > 0 {
-				q := es.client.Search().Index(es.vertexIndex)
-				q = q.Query(elastic.NewBoolQuery().Must(elastic.NewIdsQuery().Ids(idBatch...)))
-				if !load {
-					q = q.FetchSource(true).FetchSourceContext(elastic.NewFetchSourceContext(true).Exclude("data"))
-				}
-				q = q.Sort("gid", true).Size(es.pageSize)
-
-				for hit := range paginateQuery(ctx, q, es.pageSize) {
-					// Deserialize
-					vertex := &gripql.Vertex{}
-					err := protojson.Unmarshal(*hit.Source, vertex)
-					if err != nil {
-						return fmt.Errorf("failed to unmarshal vertex: %s", err)
-					}
-					r := batchMap[vertex.Gid]
-					for _, ri := range r {
-						ri.Vertex = gdbi.NewElementFromVertex(vertex)
-						o <- ri
-					}
-				}
-			}
-			for i := range signals {
-				o <- signals[i]
-			}
-		}
-
-		return nil
-	})
-
-	// Check whether any goroutines failed.
-	go func() {
-		defer close(o)
-		if err := g.Wait(); err != nil {
-			log.WithFields(log.Fields{"error": err}).Error("GetOutChannel")
-		}
-	}()
-
-	return o
-}
-
-// GetInChannel gets all vertices connected to lookup elements by incoming edges
-func (es *Graph) GetInChannel(ctx context.Context, req chan gdbi.ElementLookup, load bool, emitNull bool, edgeLabels []string) chan gdbi.ElementLookup {
-	g, ctx := errgroup.WithContext(ctx)
-
-	// Create query batches
-	batches := gdbi.LookupBatcher(req, es.pageSize, time.Microsecond)
-
-	// Find all incoming edges
-	edgeBatches := make(chan []gdbi.ElementLookup, es.pageSize)
-	g.Go(func() error {
-		defer close(edgeBatches)
-		for batch := range batches {
-			idBatch := make([]interface{}, 0, len(batch))
-			batchMap := make(map[string][]gdbi.ElementLookup, len(batch))
-			batchMapReturnCount := make(map[string]int)
-			signals := []gdbi.ElementLookup{}
-			for i := range batch {
-				if batch[i].IsSignal() {
-					signals = append(signals, batch[i])
-				} else {
-					idBatch = append(idBatch, batch[i].ID)
-					batchMap[batch[i].ID] = append(batchMap[batch[i].ID], batch[i])
-					batchMapReturnCount[batch[i].ID] = 0
-				}
-			}
-			b := []gdbi.ElementLookup{}
-			if len(idBatch) > 0 {
-				q := es.client.Search().Index(es.edgeIndex)
-				qParts := []elastic.Query{elastic.NewTermsQuery("to", idBatch...)}
-				if len(edgeLabels) > 0 {
-					labels := make([]interface{}, len(edgeLabels))
-					for i, v := range edgeLabels {
-						labels[i] = v
-					}
-					qParts = append(qParts, elastic.NewTermsQuery("label", labels...))
-				}
-				q = q.Query(elastic.NewBoolQuery().Must(qParts...))
-				q = q.FetchSource(true).FetchSourceContext(elastic.NewFetchSourceContext(true).Include("from", "to"))
-				q = q.Sort("gid", true).Size(es.pageSize)
-
-				for hit := range paginateQuery(ctx, q, es.pageSize) {
-					// Deserialize
-					edge := &gripql.Edge{}
-					err := protojson.Unmarshal(*hit.Source, edge)
-					if err != nil {
-						return fmt.Errorf("failed to unmarshal edge: %s", err)
-					}
-					r := batchMap[edge.To]
-					batchMapReturnCount[edge.To]++
-					for _, ri := range r {
-						ri.Vertex = &gdbi.Vertex{ID: edge.From}
-						b = append(b, ri)
-					}
-				}
-			}
-			if emitNull {
-				for id, count := range batchMapReturnCount {
-					if count == 0 {
-						r := batchMap[id]
-						for _, ri := range r {
-							ri.Vertex = nil
-							b = append(b, ri)
-						}
-					}
-				}
-			}
-			for i := range signals {
-				b = append(b, signals[i])
-			}
-			edgeBatches <- b
-		}
-
-		return nil
-	})
-
-	// Collect all identified vertices
-	o := make(chan gdbi.ElementLookup, es.pageSize)
-	g.Go(func() error {
-		for batch := range edgeBatches {
-			idBatch := make([]string, 0, len(batch))
-			batchMap := make(map[string][]gdbi.ElementLookup, len(batch))
-			signals := []gdbi.ElementLookup{}
-			for i := range batch {
-				if batch[i].IsSignal() {
-					signals = append(signals, batch[i])
-				} else {
-					if batch[i].Vertex != nil {
-						idBatch = append(idBatch, batch[i].Vertex.Get().ID)
-						batchMap[batch[i].Vertex.Get().ID] = append(batchMap[batch[i].Vertex.Get().ID], batch[i])
-					} else if emitNull {
-						o <- batch[i]
-					}
-				}
-			}
-			if len(idBatch) > 0 {
-				q := es.client.Search().Index(es.vertexIndex)
-				q = q.Query(elastic.NewBoolQuery().Must(elastic.NewIdsQuery().Ids(idBatch...)))
-				if !load {
-					q = q.FetchSource(true).FetchSourceContext(elastic.NewFetchSourceContext(true).Exclude("data"))
-				}
-				q = q.Sort("gid", true).Size(es.pageSize)
-
-				for hit := range paginateQuery(ctx, q, es.pageSize) {
-					// Deserialize
-					vertex := &gripql.Vertex{}
-					err := protojson.Unmarshal(*hit.Source, vertex)
-					if err != nil {
-						return fmt.Errorf("failed to unmarshal vertex: %s", err)
-					}
-					r := batchMap[vertex.Gid]
-					for _, ri := range r {
-						ri.Vertex = gdbi.NewElementFromVertex(vertex)
-						o <- ri
-					}
-				}
-				for i := range signals {
-					o <- signals[i]
-				}
-			}
-		}
-
-		return nil
-	})
-
-	// Check whether any goroutines failed.
-	go func() {
-		defer close(o)
-		if err := g.Wait(); err != nil {
-			log.WithFields(log.Fields{"error": err}).Error("GetInChannel")
-		}
-	}()
-
-	return o
-}
-
-// GetOutEdgeChannel gets all outgoing edges connected to lookup element
-func (es *Graph) GetOutEdgeChannel(ctx context.Context, req chan gdbi.ElementLookup, load bool, emitNull bool, edgeLabels []string) chan gdbi.ElementLookup {
-	g, ctx := errgroup.WithContext(ctx)
-
-	// Create query batches
-	batches := gdbi.LookupBatcher(req, es.pageSize, time.Microsecond)
-
-	// Find all outgoing edges
-	o := make(chan gdbi.ElementLookup, es.pageSize)
-	g.Go(func() error {
-		for batch := range batches {
-			idBatch := make([]interface{}, 0, len(batch))
-			batchMap := make(map[string][]gdbi.ElementLookup, len(batch))
-			batchMapReturnCount := make(map[string]int)
-			signals := []gdbi.ElementLookup{}
-			for i := range batch {
-				if batch[i].IsSignal() {
-					signals = append(signals, batch[i])
-				} else {
-					idBatch = append(idBatch, batch[i].ID)
-					batchMap[batch[i].ID] = append(batchMap[batch[i].ID], batch[i])
-					batchMapReturnCount[batch[i].ID] = 0
-				}
-			}
-			if len(idBatch) > 0 {
-				q := es.client.Search().Index(es.edgeIndex)
-				qParts := []elastic.Query{elastic.NewTermsQuery("from", idBatch...)}
-				if len(edgeLabels) > 0 {
-					labels := make([]interface{}, len(edgeLabels))
-					for i, v := range edgeLabels {
-						labels[i] = v
-					}
-					qParts = append(qParts, elastic.NewTermsQuery("label", labels...))
-				}
-				q = q.Query(elastic.NewBoolQuery().Must(qParts...))
-				if !load {
-					q = q.FetchSource(true).FetchSourceContext(elastic.NewFetchSourceContext(true).Exclude("data"))
-				}
-				q = q.Sort("gid", true).Size(es.pageSize)
-
-				for hit := range paginateQuery(ctx, q, es.pageSize) {
-					// Deserialize
-					edge := &gripql.Edge{}
-					err := protojson.Unmarshal(*hit.Source, edge)
-					if err != nil {
-						return fmt.Errorf("failed to unmarshal edge: %s", err)
-					}
-					r := batchMap[edge.From]
-					batchMapReturnCount[edge.From]++
-					for _, ri := range r {
-						ri.Edge = gdbi.NewElementFromEdge(edge)
-						o <- ri
-					}
-				}
-			}
-			if emitNull {
-				for id, count := range batchMapReturnCount {
-					if count == 0 {
-						r := batchMap[id]
-						for _, ri := range r {
-							ri.Edge = nil
-							o <- ri
-						}
-					}
-				}
-			}
-			for i := range signals {
-				o <- signals[i]
-			}
-		}
-
-		return nil
-	})
-
-	// Check whether any goroutines failed.
-	go func() {
-		defer close(o)
-		if err := g.Wait(); err != nil {
-			log.WithFields(log.Fields{"error": err}).Error("GetOutEdgeChannel")
-		}
-	}()
-
-	return o
-}
-
-// GetInEdgeChannel gets incoming edges connected to lookup element
-func (es *Graph) GetInEdgeChannel(ctx context.Context, req chan gdbi.ElementLookup, load bool, emitNull bool, edgeLabels []string) chan gdbi.ElementLookup {
-	g, ctx := errgroup.WithContext(ctx)
-
-	// Create query batches
-	batches := gdbi.LookupBatcher(req, es.pageSize, time.Microsecond)
-
-	// Find all incoming edges
-	o := make(chan gdbi.ElementLookup, es.pageSize)
-	g.Go(func() error {
-		for batch := range batches {
-			idBatch := make([]interface{}, 0, len(batch))
-			batchMap := make(map[string][]gdbi.ElementLookup, len(batch))
-			batchMapReturnCount := make(map[string]int)
-			signals := []gdbi.ElementLookup{}
-			for i := range batch {
-				if batch[i].IsSignal() {
-					signals = append(signals, batch[i])
-				} else {
-					idBatch = append(idBatch, batch[i].ID)
-					batchMap[batch[i].ID] = append(batchMap[batch[i].ID], batch[i])
-					batchMapReturnCount[batch[i].ID] = 0
-				}
-			}
-
-			if len(idBatch) > 0 {
-				q := es.client.Search().Index(es.edgeIndex)
-				qParts := []elastic.Query{elastic.NewTermsQuery("to", idBatch...)}
-				if len(edgeLabels) > 0 {
-					labels := make([]interface{}, len(edgeLabels))
-					for i, v := range edgeLabels {
-						labels[i] = v
-					}
-					qParts = append(qParts, elastic.NewTermsQuery("label", labels...))
-				}
-				q = q.Query(elastic.NewBoolQuery().Must(qParts...))
-				if !load {
-					q = q.FetchSource(true).FetchSourceContext(elastic.NewFetchSourceContext(true).Exclude("data"))
-				}
-				q = q.Sort("gid", true).Size(es.pageSize)
-
-				for hit := range paginateQuery(ctx, q, es.pageSize) {
-					// Deserialize
-					edge := &gripql.Edge{}
-					err := protojson.Unmarshal(*hit.Source, edge)
-					if err != nil {
-						return fmt.Errorf("failed to unmarshal edge: %s", err)
-					}
-					r := batchMap[edge.To]
-					batchMapReturnCount[edge.To]++
-					for _, ri := range r {
-						ri.Edge = gdbi.NewElementFromEdge(edge)
-						o <- ri
-					}
-				}
-			}
-			if emitNull {
-				for id, count := range batchMapReturnCount {
-					if count == 0 {
-						r := batchMap[id]
-						for _, ri := range r {
-							ri.Edge = nil
-							o <- ri
-						}
-					}
-				}
-			}
-			for i := range signals {
-				o <- signals[i]
-			}
-		}
-
-		return nil
-	})
-
-	// Check whether any goroutines failed.
-	go func() {
-		defer close(o)
-		if err := g.Wait(); err != nil {
-			log.WithFields(log.Fields{"error": err}).Error("GetInEdgeChannel")
-		}
-	}()
-
-	return o
-}
-
-// ListVertexLabels returns a list of vertex types in the graph
-func (es *Graph) ListVertexLabels() ([]string, error) {
-	q := es.client.Search().Index(es.vertexIndex).Type("vertex")
-	aggName := "vertex.labels.aggregation"
-	q = q.Aggregation(aggName, elastic.NewTermsAggregation().Field("label").Size(1000000))
-	res, err := q.Do(context.Background())
-	if err != nil {
-		return nil, err
-	}
-	labels := []string{}
-	if agg, found := res.Aggregations.Terms(aggName); found {
-		for _, bucket := range agg.Buckets {
-			labels = append(labels, bucket.Key.(string))
-		}
-	}
-	return labels, nil
-}
-
-// ListEdgeLabels returns a list of edge types in the graph
-func (es *Graph) ListEdgeLabels() ([]string, error) {
-	q := es.client.Search().Index(es.edgeIndex).Type("edge")
-	aggName := "edge.labels.aggregation"
-	q = q.Aggregation(aggName, elastic.NewTermsAggregation().Field("label").Size(1000000))
-	res, err := q.Do(context.Background())
-	if err != nil {
-		return nil, err
-	}
-	labels := []string{}
-	if agg, found := res.Aggregations.Terms(aggName); found {
-		for _, bucket := range agg.Buckets {
-			labels = append(labels, bucket.Key.(string))
-		}
-	}
-	return labels, nil
-}
diff --git a/elastic/graphdb.go b/elastic/graphdb.go
deleted file mode 100644
index 077582f5..00000000
--- a/elastic/graphdb.go
+++ /dev/null
@@ -1,222 +0,0 @@
-package elastic
-
-import (
-	"context"
-	"fmt"
-	"strings"
-	"time"
-
-	"github.com/bmeg/grip/gdbi"
-	"github.com/bmeg/grip/gripql"
-	"github.com/bmeg/grip/log"
-	"github.com/bmeg/grip/timestamp"
-	elastic "gopkg.in/olivere/elastic.v5"
-)
-
-// Config describes the configuration for the elasticsearch driver.
-type Config struct {
-	URL         string
-	DBName      string
-	Username    string
-	Password    string
-	Synchronous bool
-	BatchSize   int
-}
-
-func (c *Config) SetDefaults() {
-	if c.DBName == "" {
-		c.DBName = "gripdb"
-	}
-	if c.BatchSize == 0 {
-		c.BatchSize = 1000
-	}
-}
-
-// GraphDB implements the GraphDB interface with elasticsearch as a backend
-type GraphDB struct {
-	database string
-	conf     Config
-	ts       *timestamp.Timestamp
-	client   *elastic.Client
-}
-
-// NewGraphDB creates a new elasticsearch graph database interface
-func NewGraphDB(conf Config) (gdbi.GraphDB, error) {
-	log.Info("Starting ElasticSearch Driver")
-	database := strings.ToLower(conf.DBName)
-	err := gripql.ValidateGraphName(database)
-	if err != nil {
-		return nil, fmt.Errorf("invalid database name: %v", err)
-	}
-
-	ts := timestamp.NewTimestamp()
-	opts := []elastic.ClientOptionFunc{
-		elastic.SetURL(conf.URL),
-		elastic.SetSniff(false),
-		elastic.SetRetrier(
-			elastic.NewBackoffRetrier(
-				elastic.NewExponentialBackoff(time.Millisecond*50, time.Minute),
-			),
-		),
-	}
-
-	if conf.Username != "" && conf.Password != "" {
-		opts = append(opts, elastic.SetBasicAuth(conf.Username, conf.Password))
-	}
-
-	client, err := elastic.NewClient(opts...)
-	if err != nil {
-		return nil, fmt.Errorf("failed to create elasticsearch client: %v", err)
-	}
-	if conf.BatchSize == 0 {
-		conf.BatchSize = 1000
-	}
-	db := &GraphDB{database: database, conf: conf, ts: &ts, client: client}
-	for _, g := range db.ListGraphs() {
-		g := g
-		db.ts.Touch(g)
-		go func() {
-			err := db.setupIndices(context.Background(), g)
-			if err != nil {
-				log.WithFields(log.Fields{"error": err, "graph": g}).Error("Setting up indices")
-			}
-		}()
-	}
-	return db, nil
-}
-
-// Close closes connection to elastic search
-func (es *GraphDB) Close() error {
-	es.client.Stop()
-	return nil
-}
-
-// ListGraphs returns list of graphs on elastic search instance
-func (es *GraphDB) ListGraphs() []string {
-	graphPrefix := fmt.Sprintf("%s_", es.database)
-	out := []string{}
-	idxNames, err := es.client.IndexNames()
-	if err != nil {
-		log.WithFields(log.Fields{"error": err}).Error("ListGraphs: ElasticSearch: listing index names")
-	}
-	for _, idx := range idxNames {
-		if strings.HasPrefix(idx, graphPrefix) {
-			gName := strings.TrimPrefix(idx, graphPrefix)
-			gName = strings.TrimSuffix(gName, "_vertex")
-			gName = strings.TrimSuffix(gName, "_edge")
-			out = append(out, gName)
-		}
-	}
-	return out
-}
-
-func (es *GraphDB) createIndex(ctx context.Context, name, body string) error {
-	exists, err := es.client.
-		IndexExists(name).
-		Do(ctx)
-
-	if err != nil {
-		return err
-	} else if !exists {
-		if _, err := es.client.CreateIndex(name).Body(body).Do(ctx); err != nil {
-			return err
-		}
-	}
-	return nil
-}
-
-func (es *GraphDB) setupIndices(ctx context.Context, graph string) error {
-	vertexIndex := fmt.Sprintf("%s_%s_vertex", es.database, graph)
-	vMapping := `{
-    "mappings": {
-      "vertex":{
-        "properties":{
-          "gid": {
-            "type": "keyword"
-          },
-          "label": {
-            "type": "keyword"
-          }
-        }
-      }
-    }
-  }`
-	if err := es.createIndex(ctx, vertexIndex, vMapping); err != nil {
-		return err
-	}
-
-	edgeIndex := fmt.Sprintf("%s_%s_edge", es.database, graph)
-	eMapping := `{
-    "mappings": {
-      "edge":{
-        "properties":{
-          "gid": {
-            "type": "keyword"
-          },
-          "from": {
-            "type": "keyword"
-          },
-          "to": {
-            "type": "keyword"
-          },
-          "label": {
-            "type": "keyword"
-          }
-        }
-      }
-    }
-  }`
-	if err := es.createIndex(ctx, edgeIndex, eMapping); err != nil {
-		return err
-	}
-	return nil
-}
-
-// AddGraph adds a new graph to the graphdb
-func (es *GraphDB) AddGraph(graph string) error {
-	err := gripql.ValidateGraphName(graph)
-	if err != nil {
-		return err
-	}
-	return es.setupIndices(context.Background(), graph)
-}
-
-// DeleteGraph deletes a graph from the graphdb
-func (es *GraphDB) DeleteGraph(graph string) error {
-	ctx := context.Background()
-
-	vertexIndex := fmt.Sprintf("%s_%s_vertex", es.database, graph)
-	if _, err := es.client.DeleteIndex(vertexIndex).Do(ctx); err != nil {
-		return err
-	}
-
-	edgeIndex := fmt.Sprintf("%s_%s_edge", es.database, graph)
-	if _, err := es.client.DeleteIndex(edgeIndex).Do(ctx); err != nil {
-		return err
-	}
-	return nil
-}
-
-// Graph returns interface to a specific graph in the graphdb
-func (es *GraphDB) Graph(graph string) (gdbi.GraphInterface, error) {
-	found := false
-	for _, gname := range es.ListGraphs() {
-		if graph == gname {
-			found = true
-		}
-	}
-	if !found {
-		return nil, fmt.Errorf("graph '%s' was not found", graph)
-	}
-
-	return &Graph{
-		ts:          es.ts,
-		client:      es.client,
-		graph:       graph,
-		vertexIndex: fmt.Sprintf("%s_%s_vertex", es.database, graph),
-		edgeIndex:   fmt.Sprintf("%s_%s_edge", es.database, graph),
-		batchSize:   es.conf.BatchSize,
-		synchronous: es.conf.Synchronous,
-		pageSize:    500,
-	}, nil
-}
diff --git a/elastic/index.go b/elastic/index.go
deleted file mode 100644
index 74bb9737..00000000
--- a/elastic/index.go
+++ /dev/null
@@ -1,236 +0,0 @@
-package elastic
-
-import (
-	"context"
-	//"fmt"
-	"io"
-	//"strconv"
-	//"strings"
-
-	"github.com/bmeg/grip/gripql"
-	//"github.com/bmeg/grip/jsonpath"
-	"github.com/bmeg/grip/log"
-	//"github.com/bmeg/grip/protoutil"
-	elastic "gopkg.in/olivere/elastic.v5"
-)
-
-// AddVertexIndex adds a new field to be indexed
-func (es *Graph) AddVertexIndex(label string, field string) error {
-	log.WithFields(log.Fields{"label": label, "field": field}).Info("Adding vertex index")
-	return nil
-}
-
-// DeleteVertexIndex removes a vertex field index
-func (es *Graph) DeleteVertexIndex(label string, field string) error {
-	log.WithFields(log.Fields{"label": label, "field": field}).Info("Deleting vertex index")
-	return nil
-}
-
-// GetVertexIndexList gets list if vertex indices
-func (es *Graph) GetVertexIndexList() <-chan *gripql.IndexID {
-	log.Debug("Running GetVertexIndexList")
-	ctx := context.Background()
-
-	o := make(chan *gripql.IndexID)
-	go func() {
-		defer close(o)
-
-		// get all unique labels
-		q := es.client.Search().Index(es.vertexIndex).Type("vertex")
-		aggName := "labels.aggregation"
-		q = q.Aggregation(aggName, elastic.NewTermsAggregation().Field("label").Size(1000000).OrderByCountDesc())
-		res, err := q.Do(ctx)
-		if err != nil {
-			log.WithFields(log.Fields{"error": err}).Error("GetVertexIndexList: label term count failed")
-			return
-		}
-
-		labels := []string{}
-		if agg, found := res.Aggregations.Terms(aggName); found {
-			for _, bucket := range agg.Buckets {
-				labels = append(labels, bucket.Key.(string))
-			}
-		}
-
-		// list indexed fields
-		mapping, err := es.client.GetMapping().Index(es.vertexIndex).Type("vertex").Do(ctx)
-		if err != nil {
-			log.WithFields(log.Fields{"error": err}).Error("GetVertexIndexList: get field mapping failed")
-			return
-		}
-
-		var data map[string]interface{}
-		if props, ok := mapping[es.vertexIndex].(map[string]interface{}); ok {
-			if props, ok = props["mappings"].(map[string]interface{}); ok {
-				if props, ok = props["vertex"].(map[string]interface{}); ok {
-					if props, ok = props["properties"].(map[string]interface{}); ok {
-						if props, ok = props["data"].(map[string]interface{}); ok {
-							if props, ok = props["properties"].(map[string]interface{}); ok {
-								data = props
-							}
-						}
-					}
-				}
-			}
-		}
-
-		for k := range data {
-			for _, l := range labels {
-				o <- &gripql.IndexID{Graph: es.graph, Label: l, Field: k}
-			}
-		}
-	}()
-
-	return o
-}
-
-/*
-// GetVertexTermAggregation returns the count of every term across vertices
-func (es *Graph) GetVertexTermAggregation(ctx context.Context, label string, field string, size uint32) (*gripql.AggregationResult, error) {
-	log.WithFields(log.Fields{"label": label, "field": field, "size": size}).Debug("Running GetVertexTermAggregation")
-	namespace := jsonpath.GetNamespace(field)
-	if namespace != jsonpath.Current {
-		return nil, fmt.Errorf("invalid field path")
-	}
-	field = jsonpath.GetJSONPath(field)
-	field = strings.TrimPrefix(field, "$.")
-
-	out := &gripql.AggregationResult{
-		Buckets: []*gripql.AggregationResultBucket{},
-	}
-
-	q := es.client.Search().Index(es.vertexIndex).Type("vertex")
-	q = q.Query(elastic.NewBoolQuery().Filter(elastic.NewTermQuery("label", label)))
-	aggName := fmt.Sprintf("term.aggregation.%s.%s", label, field)
-	if size == 0 {
-		size = 1000000
-	}
-	q = q.Aggregation(aggName,
-		elastic.NewTermsAggregation().Field(field+".keyword").Size(int(size)).OrderByCountDesc())
-	res, err := q.Do(ctx)
-	if err != nil {
-		return nil, fmt.Errorf("term count failed: %s", err)
-	}
-	if agg, found := res.Aggregations.Terms(aggName); found {
-		for _, bucket := range agg.Buckets {
-			term := protoutil.WrapValue(bucket.Key.(string))
-			out.SortedInsert(&gripql.AggregationResultBucket{Key: term, Value: float64(bucket.DocCount)})
-			if size > 0 {
-				if len(out.Buckets) > int(size) {
-					out.Buckets = out.Buckets[:size]
-				}
-			}
-		}
-	}
-
-	return out, nil
-}
-*/
-
-/*
-//GetVertexHistogramAggregation get binned counts of a term across vertices
-func (es *Graph) GetVertexHistogramAggregation(ctx context.Context, label string, field string, interval uint32) (*gripql.AggregationResult, error) {
-	log.WithFields(log.Fields{"label": label, "field": field, "interval": interval}).Debug("Running GetVertexHistogramAggregation")
-	namespace := jsonpath.GetNamespace(field)
-	if namespace != jsonpath.Current {
-		return nil, fmt.Errorf("invalid field path")
-	}
-	field = jsonpath.GetJSONPath(field)
-	field = strings.TrimPrefix(field, "$.")
-
-	out := &gripql.AggregationResult{
-		Buckets: []*gripql.AggregationResultBucket{},
-	}
-
-	q := es.client.Search().Index(es.vertexIndex).Type("vertex")
-	q = q.Query(elastic.NewBoolQuery().Filter(elastic.NewTermQuery("label", label)))
-	aggName := fmt.Sprintf("histogram.aggregation.%s.%s", label, field)
-	q = q.Aggregation(aggName,
-		elastic.NewHistogramAggregation().Field(field).Interval(float64(interval)).OrderByKeyAsc())
-	res, err := q.Do(ctx)
-	if err != nil {
-		return nil, fmt.Errorf("histogram aggregation failed: %s", err)
-	}
-	if agg, found := res.Aggregations.Histogram(aggName); found {
-		for _, bucket := range agg.Buckets {
-			term := protoutil.WrapValue(bucket.Key)
-			out.Buckets = append(out.Buckets, &gripql.AggregationResultBucket{Key: term, Value: float64(bucket.DocCount)})
-		}
-	}
-
-	return out, nil
-}
-*/
-
-/*
-//GetVertexPercentileAggregation get percentiles of a term across vertices
-func (es *Graph) GetVertexPercentileAggregation(ctx context.Context, label string, field string, percents []float64) (*gripql.AggregationResult, error) {
-	log.WithFields(log.Fields{"label": label, "field": field, "percents": percents}).Debug("Running GetVertexPercentileAggregation")
-	namespace := jsonpath.GetNamespace(field)
-	if namespace != jsonpath.Current {
-		return nil, fmt.Errorf("invalid field path")
-	}
-	field = jsonpath.GetJSONPath(field)
-	field = strings.TrimPrefix(field, "$.")
-
-	out := &gripql.AggregationResult{
-		Buckets: []*gripql.AggregationResultBucket{},
-	}
-
-	q := es.client.Search().Index(es.vertexIndex).Type("vertex")
-	q = q.Query(elastic.NewBoolQuery().Filter(elastic.NewTermQuery("label", label)))
-	aggName := fmt.Sprintf("percentile.aggregation.%s.%s", label, field)
-	q = q.Aggregation(aggName,
-		elastic.NewPercentilesAggregation().Field(field).Percentiles(percents...))
-	res, err := q.Do(ctx)
-	if err != nil {
-		return nil, fmt.Errorf("percentile aggregation failed: %s", err)
-	}
-	if agg, found := res.Aggregations.Percentiles(aggName); found {
-		for key, val := range agg.Values {
-			keyf, err := strconv.ParseFloat(key, 64)
-			if err != nil {
-				return nil, fmt.Errorf("percentile key conversion failed: %s", err)
-			}
-			key := protoutil.WrapValue(keyf)
-			out.Buckets = append(out.Buckets, &gripql.AggregationResultBucket{Key: key, Value: float64(val)})
-		}
-	}
-
-	return out, nil
-}
-*/
-
-// VertexLabelScan produces a channel of all vertex ids where the vertex label matches `label`
-func (es *Graph) VertexLabelScan(ctx context.Context, label string) chan string {
-	log.WithFields(log.Fields{"label": label}).Debug("Running VertexLabelScan")
-
-	o := make(chan string, es.pageSize)
-	go func() {
-		defer close(o)
-		if label == "" {
-			return
-		}
-		scroll := es.client.Scroll().
-			Index(es.vertexIndex).
-			Query(elastic.NewBoolQuery().Must(elastic.NewTermQuery("label", label))).
-			Sort("gid", true).
-			Size(es.pageSize)
-		for {
-			results, err := scroll.Do(ctx)
-			if err == io.EOF {
-				return // all results retrieved
-			}
-			if err != nil {
-				log.WithFields(log.Fields{"error": err}).Debug("VertexLabelScan: scroll failed")
-				return
-			}
-			// Send the hits to the hits channel
-			for _, hit := range results.Hits.Hits {
-				o <- hit.Id
-			}
-		}
-	}()
-
-	return o
-}
diff --git a/elastic/schema.go b/elastic/schema.go
deleted file mode 100644
index 351edcd8..00000000
--- a/elastic/schema.go
+++ /dev/null
@@ -1,19 +0,0 @@
-package elastic
-
-import (
-	"context"
-
-	"github.com/bmeg/grip/gdbi/schema"
-	"github.com/bmeg/grip/gripql"
-)
-
-// BuildSchema returns the schema of a specific graph in the database
-func (es *GraphDB) BuildSchema(ctx context.Context, graph string, sampleN uint32, random bool) (*gripql.Graph, error) {
-
-	gr, err := es.Graph(graph)
-	if err != nil {
-		return nil, err
-	}
-
-	return schema.SchemaScan(ctx, graph, gr, sampleN, random)
-}
diff --git a/elastic/util.go b/elastic/util.go
deleted file mode 100644
index dcd8f379..00000000
--- a/elastic/util.go
+++ /dev/null
@@ -1,37 +0,0 @@
-package elastic
-
-import (
-	"context"
-
-	"github.com/bmeg/grip/log"
-	elastic "gopkg.in/olivere/elastic.v5"
-)
-
-func paginateQuery(ctx context.Context, q *elastic.SearchService, pageSize int) chan *elastic.SearchHit {
-	o := make(chan *elastic.SearchHit, pageSize)
-	go func() {
-		defer close(o)
-		done := false
-		count := 0
-		for {
-			if done {
-				return
-			}
-			res, err := q.From(count).Do(ctx)
-			if err != nil {
-				log.WithFields(log.Fields{"error": err}).Error("ElasticSearch: paginateQuery")
-				return
-			}
-			if res.TotalHits() > 0 {
-				for _, hit := range res.Hits.Hits {
-					count++
-					o <- hit
-				}
-			}
-			if int64(count) == res.TotalHits() {
-				done = true
-			}
-		}
-	}()
-	return o
-}
diff --git a/go.mod b/go.mod
index 8b9edddd..773a4238 100644
--- a/go.mod
+++ b/go.mod
@@ -9,6 +9,7 @@ require (
 	github.com/akuity/grpc-gateway-client v0.0.0-20231116134900-80c401329778
 	github.com/antlr/antlr4/runtime/Go/antlr v1.4.10
 	github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad
+	github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92
 	github.com/bmeg/jsonschemagraph v0.0.3-0.20241113190142-5e57a1561020
 	github.com/boltdb/bolt v1.3.1
 	github.com/casbin/casbin/v2 v2.97.0
@@ -49,7 +50,6 @@ require (
 	google.golang.org/genproto/googleapis/api v0.0.0-20240711142825-46eb208f015d
 	google.golang.org/grpc v1.65.0
 	google.golang.org/protobuf v1.34.2
-	gopkg.in/olivere/elastic.v5 v5.0.86
 	sigs.k8s.io/yaml v1.4.0
 )
 
@@ -58,8 +58,6 @@ require (
 	github.com/DataDog/zstd v1.5.5 // indirect
 	github.com/alevinval/sse v1.0.2 // indirect
 	github.com/beorn7/perks v1.0.1 // indirect
-	github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc // indirect
-	github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92 // indirect
 	github.com/casbin/govaluate v1.2.0 // indirect
 	github.com/cespare/xxhash v1.1.0 // indirect
 	github.com/cespare/xxhash/v2 v2.3.0 // indirect
@@ -99,11 +97,9 @@ require (
 	github.com/jcmturner/gokrb5/v8 v8.4.4 // indirect
 	github.com/jcmturner/rpc/v2 v2.0.3 // indirect
 	github.com/jessevdk/go-flags v1.6.1 // indirect
-	github.com/josharian/intern v1.0.0 // indirect
 	github.com/klauspost/compress v1.17.9 // indirect
 	github.com/klauspost/cpuid/v2 v2.2.8 // indirect
 	github.com/kr/text v0.2.0 // indirect
-	github.com/mailru/easyjson v0.7.7 // indirect
 	github.com/mattn/go-colorable v0.1.13 // indirect
 	github.com/mattn/go-isatty v0.0.20 // indirect
 	github.com/minio/md5-simd v1.1.2 // indirect
diff --git a/go.sum b/go.sum
index 1f00e009..ddac6251 100644
--- a/go.sum
+++ b/go.sum
@@ -26,12 +26,9 @@ github.com/antlr/antlr4/runtime/Go/antlr v1.4.10/go.mod h1:F7bn7fEU90QkQ3tnmaTx3
 github.com/antlr/antlr4/runtime/Go/antlr/v4 v4.0.0-20230512164433-5d1fd1a340c9 h1:goHVqTbFX3AIo0tzGr14pgfAW2ZfPChKO21Z9MGf/gk=
 github.com/antlr/antlr4/runtime/Go/antlr/v4 v4.0.0-20230512164433-5d1fd1a340c9/go.mod h1:pSwJ0fSY5KhvocuWSx4fz3BA8OrA1bQn+K1Eli3BRwM=
 github.com/armon/consul-api v0.0.0-20180202201655-eb2c6b5be1b6/go.mod h1:grANhF5doyWs3UAsr3K4I6qtAmlQcZDesFNEHPZAzj8=
-github.com/aws/aws-sdk-go v1.29.11/go.mod h1:1KvfttTE3SPKMpo8g2c6jL3ZKfXtFvKscTgahTma5Xg=
 github.com/benbjohnson/clock v1.1.0/go.mod h1:J11/hYXuz8f4ySSvYwY0FKfm+ezbsZBKZxNJlLklBHA=
 github.com/beorn7/perks v1.0.1 h1:VlbKKnNfV8bJzeqoa4cOKqO6bYr3WgKZxO8Z16+hsOM=
 github.com/beorn7/perks v1.0.1/go.mod h1:G2ZrVWU2WbWT9wwq4/hrbKbnv/1ERSJQ0ibhJ6rlkpw=
-github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc h1:/0v/ZcXYjGs44InmjECrls31onIbVKVu1Q/E2cmnCEU=
-github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc/go.mod h1:hoSeuZtqe58ANXHuWpeODx4bDHGV36QXlCs1yrUvK6M=
 github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad h1:ICgBexeLB7iv/IQz4rsP+MimOXFZUwWSPojEypuOaQ8=
 github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad/go.mod h1:ft96Irkp72C7ZrUWRenG7LrF0NKMxXdRvsypo5Njhm4=
 github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92 h1:Myx/j+WxfEg+P3nDaizR1hBpjKSLgvr4ydzgp1/1pAU=
@@ -133,7 +130,6 @@ github.com/go-resty/resty/v2 v2.13.1 h1:x+LHXBI2nMB1vqndymf26quycC4aggYJ7DECYbiz
 github.com/go-resty/resty/v2 v2.13.1/go.mod h1:GznXlLxkq6Nh4sU59rPmUw3VtgpO3aS96ORAI6Q7d+0=
 github.com/go-sourcemap/sourcemap v2.1.4+incompatible h1:a+iTbH5auLKxaNwQFg0B+TCYl6lbukKPc7b5x0n1s6Q=
 github.com/go-sourcemap/sourcemap v2.1.4+incompatible/go.mod h1:F8jJfvm2KbVjc5NqelyYJmf/v5J0dwNLS2mL4sNA1Jg=
-github.com/go-sql-driver/mysql v1.5.0/go.mod h1:DCzpHaOWr8IXmIStZouvnhqoel9Qv2LBy8hT2VhHyBg=
 github.com/go-sql-driver/mysql v1.8.1 h1:LedoTUt/eveggdHS9qUFC1EFSa8bU2+1pZjSRpvNJ1Y=
 github.com/go-sql-driver/mysql v1.8.1/go.mod h1:wEBSXgmK//2ZFJyE+qWnIsVGmvmEKlqwuVSjsCm7DZg=
 github.com/go-stack/stack v1.8.0/go.mod h1:v0f6uXyyMGvRgIKkXu+yp6POWl0qKG85gN/melR3HDY=
@@ -145,7 +141,6 @@ github.com/golang/freetype v0.0.0-20170609003504-e2365dfdc4a0/go.mod h1:E/TSTwGw
 github.com/golang/glog v0.0.0-20160126235308-23def4e6c14b/go.mod h1:SBH7ygxi8pfUlaOkMMuAQtPIUF8ecWP5IEl/CR7VP2Q=
 github.com/golang/glog v1.2.2 h1:1+mZ9upx1Dh6FmUTFR1naJ77miKiXgALjWOZ3NVFPmY=
 github.com/golang/glog v1.2.2/go.mod h1:6AhwSGph0fcJtXVM/PEHPqZlFeoLxhs7/t5UDAwmO+w=
-github.com/golang/groupcache v0.0.0-20190702054246-869f871628b6/go.mod h1:cIg4eruTrX1D+g88fzRXU5OdNfaM+9IcxsU14FzY7Hc=
 github.com/golang/mock v1.1.1/go.mod h1:oTYuIxOrZwtPieC+H1uAHpcLFnEyAGVDL/k47Jfbm0A=
 github.com/golang/mock v1.4.4 h1:l75CXGRSwbaYNpl/Z2X1XIIAMSCquvXgpVZDhwEIJsc=
 github.com/golang/mock v1.4.4/go.mod h1:l3mdAwkq5BuhzHwde/uurv3sEJeZMXNpwsxVWU71h+4=
@@ -227,11 +222,8 @@ github.com/jessevdk/go-flags v1.6.1 h1:Cvu5U8UGrLay1rZfv/zP7iLpSHGUZ/Ou68T0iX1bB
 github.com/jessevdk/go-flags v1.6.1/go.mod h1:Mk8T1hIAWpOiJiHa9rJASDK2UGWji0EuPGBnNLMooyc=
 github.com/jhump/protoreflect v1.15.1 h1:HUMERORf3I3ZdX05WaQ6MIpd/NJ434hTp5YiKgfCL6c=
 github.com/jhump/protoreflect v1.15.1/go.mod h1:jD/2GMKKE6OqX8qTjhADU1e6DShO+gavG9e0Q693nKo=
-github.com/jmespath/go-jmespath v0.0.0-20180206201540-c2b33e8439af/go.mod h1:Nht3zPeWKUH0NzdCt2Blrr5ys8VGpn0CEB0cQHVjt7k=
 github.com/jmoiron/sqlx v1.4.0 h1:1PLqN7S1UYp5t4SrVVnt4nUVNemrDAtxlulVe+Qgm3o=
 github.com/jmoiron/sqlx v1.4.0/go.mod h1:ZrZ7UsYB/weZdl2Bxg6jCRO9c3YHl8r3ahlKmRT4JLY=
-github.com/josharian/intern v1.0.0 h1:vlS4z54oSdjm0bgjRigI+G1HpF+tI+9rE5LLzOg8HmY=
-github.com/josharian/intern v1.0.0/go.mod h1:5DoeVV0s6jJacbCEi61lwdGj/aVlrQvzHFFd8Hwg//Y=
 github.com/jtolds/gls v4.20.0+incompatible h1:xdiiI2gbIgH/gLH7ADydsJ1uDOEzR8yvV7C0MuV77Wo=
 github.com/jtolds/gls v4.20.0+incompatible/go.mod h1:QJZ7F/aHp+rZTRtaJ1ow/lLfFfVYBRgL+9YlvaHOwJU=
 github.com/jung-kurt/gofpdf v1.0.3-0.20190309125859-24315acbbda5/go.mod h1:7Id9E/uU8ce6rXgefFLlgrJj/GYY22cpxn+r32jIOes=
@@ -250,7 +242,6 @@ github.com/knakk/rdf v0.0.0-20190304171630-8521bf4c5042 h1:Vzdm5hdlLdpJOKK+hKtkV
 github.com/knakk/rdf v0.0.0-20190304171630-8521bf4c5042/go.mod h1:fYE0718xXI13XMYLc6iHtvXudfyCGMsZ9hxSM1Ommpg=
 github.com/konsorten/go-windows-terminal-sequences v1.0.1/go.mod h1:T0+1ngSBFLxvqU3pZ+m/2kptfBszLMUkC4ZK/EgS/cQ=
 github.com/kr/pretty v0.1.0/go.mod h1:dAy3ld7l9f0ibDNOQOHHMYYIIbhfbHSm3C4ZsoJORNo=
-github.com/kr/pretty v0.2.0/go.mod h1:ipq/a2n7PKx3OHsz4KJII5eveXtPO4qwEXGdVfWzfnI=
 github.com/kr/pretty v0.3.1 h1:flRD4NNwYAUpkphVc1HcthR4KEIFJ65n8Mw5qdRn3LE=
 github.com/kr/pretty v0.3.1/go.mod h1:hoEshYVHaxMs3cyo3Yncou5ZscifuDolrwPKZanG3xk=
 github.com/kr/pty v1.1.1/go.mod h1:pFQYn66WHrOpPYNljwOMqo10TkYh1fy3cYio2l3bCsQ=
@@ -262,9 +253,6 @@ github.com/lib/pq v1.10.9/go.mod h1:AlVN5x4E4T544tWzH6hKfbfQvm3HdbOxrmggDNAPY9o=
 github.com/logrusorgru/aurora v2.0.3+incompatible h1:tOpm7WcpBTn4fjmVfgpQq0EfczGlG91VSDkswnjF5A8=
 github.com/logrusorgru/aurora v2.0.3+incompatible/go.mod h1:7rIyQOR62GCctdiQpZ/zOJlFyk6y+94wXzv6RNZgaR4=
 github.com/magiconair/properties v1.8.0/go.mod h1:PppfXfuXeibc/6YijjN8zIbojt8czPbwD3XqdrwzmxQ=
-github.com/mailru/easyjson v0.7.1/go.mod h1:KAzv3t3aY1NaHWoQz1+4F1ccyAH66Jk7yos7ldAVICs=
-github.com/mailru/easyjson v0.7.7 h1:UGYAvKxe3sBsEDzO8ZeWOSlIQfWFlxbzLZe7hwFURr0=
-github.com/mailru/easyjson v0.7.7/go.mod h1:xzfreul335JAWq5oZzymOObrkdz5UnU4kGfJJLY9Nlc=
 github.com/mattn/go-colorable v0.1.9/go.mod h1:u6P/XSegPjTcexA+o6vUJrdnUu04hMope9wVRipJSqc=
 github.com/mattn/go-colorable v0.1.12/go.mod h1:u5H1YNBxpqRaxsYJYSkiCWKzEfiAb1Gb520KVy5xxl4=
 github.com/mattn/go-colorable v0.1.13 h1:fFA4WZxdEF4tXPZVKMLwD8oUnCTTo08duU7wxecdEvA=
@@ -299,7 +287,6 @@ github.com/nxadm/tail v1.4.11 h1:8feyoE3OzPrcshW5/MJ4sGESc5cqmGkGCWlco4l0bqY=
 github.com/nxadm/tail v1.4.11/go.mod h1:OTaG3NK980DZzxbRq6lEuzgU+mug70nY11sMd4JXXHc=
 github.com/oklog/run v1.1.0 h1:GEenZ1cK0+q0+wsJew9qUg/DyD8k3JzYsZAi5gYi2mA=
 github.com/oklog/run v1.1.0/go.mod h1:sVPdnTZT1zYwAJeCMu2Th4T21pA3FPOQRfWjQlk7DVU=
-github.com/olivere/elastic/v7 v7.0.12/go.mod h1:14rWX28Pnh3qCKYRVnSGXWLf9MbLonYS/4FDCY3LAPo=
 github.com/onsi/ginkgo v1.6.0/go.mod h1:lLunBs/Ym6LB5Z9jYTR76FiuTmxDTDusOGeTQH+WWjE=
 github.com/onsi/ginkgo v1.7.0/go.mod h1:lLunBs/Ym6LB5Z9jYTR76FiuTmxDTDusOGeTQH+WWjE=
 github.com/onsi/ginkgo v1.12.1/go.mod h1:zj2OWP4+oCPe1qIXoGWkgMRwljMUYCdkwsT2108oapk=
@@ -345,8 +332,6 @@ github.com/rs/xid v1.5.0 h1:mKX4bl4iPYJtEIxp6CYiUuLQ/8DYMoz0PUdtGgMFRVc=
 github.com/rs/xid v1.5.0/go.mod h1:trrq9SKmegXys3aeAKXMUTdJsYXVwGY3RLcfgqegfbg=
 github.com/russross/blackfriday v1.5.2/go.mod h1:JO/DiYxRf+HjHt06OyowR9PTA263kcR/rfWxYHBV53g=
 github.com/russross/blackfriday/v2 v2.1.0/go.mod h1:+Rmxgy9KzJVeS9/2gXHxylqXiyQDYRxCVz55jmeOWTM=
-github.com/santhosh-tekuri/jsonschema/v5 v5.3.1 h1:lZUw3E0/J3roVtGQ+SCrUrg3ON6NgVqpn3+iol9aGu4=
-github.com/santhosh-tekuri/jsonschema/v5 v5.3.1/go.mod h1:uToXkOrWAZ6/Oc07xWQrPOhJotwFIyu2bBVN41fcDUY=
 github.com/sclevine/agouti v3.0.0+incompatible/go.mod h1:b4WX9W9L1sfQKXeJf1mUTLZKJ48R1S7H23Ji7oFO5Bw=
 github.com/segmentio/ksuid v1.0.4 h1:sBo2BdShXjmcugAMwjugoGUdUV0pcxY5mW4xKRn3v4c=
 github.com/segmentio/ksuid v1.0.4/go.mod h1:/XUiZBD3kVx5SmUOl55voK5yeAbBNNIed+2O73XgrPE=
@@ -355,11 +340,8 @@ github.com/sirupsen/logrus v1.9.3 h1:dueUQJ1C2q9oE3F7wvmSGAaVtTmUizReu6fjN8uqzbQ
 github.com/sirupsen/logrus v1.9.3/go.mod h1:naHLuLoDiP4jHNo9R0sCBMtWGeIprob74mVsIT4qYEQ=
 github.com/smarty/assertions v1.15.0 h1:cR//PqUBUiQRakZWqBiFFQ9wb8emQGDb0HeGdqGByCY=
 github.com/smarty/assertions v1.15.0/go.mod h1:yABtdzeQs6l1brC900WlRNwj6ZR55d7B+E8C6HtKdec=
-github.com/smartystreets/assertions v1.0.1/go.mod h1:kHHU4qYBaI3q23Pp3VPrmWhuIUrLW/7eUrw0BU5VaoM=
-github.com/smartystreets/go-aws-auth v0.0.0-20180515143844-0c1422d1fdb9/go.mod h1:SnhjPscd9TpLiy1LpzGSKh3bXCfxxXuqd9xmQJy3slM=
 github.com/smartystreets/goconvey v1.8.1 h1:qGjIddxOk4grTu9JPOU31tVfq3cNdBlNa5sSznIX1xY=
 github.com/smartystreets/goconvey v1.8.1/go.mod h1:+/u4qLyY6x1jReYOp7GOM2FSt8aP9CzCZL03bI28W60=
-github.com/smartystreets/gunit v1.1.3/go.mod h1:EH5qMBab2UclzXUcpR8b93eHsIlp9u+pDQIRp5DZNzQ=
 github.com/spaolacci/murmur3 v0.0.0-20180118202830-f09979ecbc72/go.mod h1:JwIasOWyU6f++ZhiEuf87xNszmSA2myDM2Kzu9HwQUA=
 github.com/spaolacci/murmur3 v1.1.0 h1:7c1g84S4BPRrfL5Xrdp6fOJ206sU9y293DDHaoy0bLI=
 github.com/spaolacci/murmur3 v1.1.0/go.mod h1:JwIasOWyU6f++ZhiEuf87xNszmSA2myDM2Kzu9HwQUA=
@@ -416,7 +398,6 @@ github.com/yuin/goldmark v1.2.1/go.mod h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9dec
 github.com/yuin/goldmark v1.4.13/go.mod h1:6yULJ656Px+3vBD8DxQVa3kxgyrAnzto9xy5taEt/CY=
 go.mongodb.org/mongo-driver v1.11.9 h1:JY1e2WLxwNuwdBAPgQxjf4BWweUGP86lF55n89cGZVA=
 go.mongodb.org/mongo-driver v1.11.9/go.mod h1:P8+TlbZtPFgjUrmnIF41z97iDnSMswJJu6cztZSlCTg=
-go.opencensus.io v0.22.3/go.mod h1:yxeiOL68Rb0Xd1ddK5vPZ/oVn4vY4Ynel7k9FzqtOIw=
 go.uber.org/atomic v1.7.0/go.mod h1:fEN4uk6kAWBTFdckzkM89CLk9XfWZrxpCo0nPH17wJc=
 go.uber.org/goleak v1.1.10/go.mod h1:8a7PlsEVH3e/a/GLqe5IIrQx6GzcnRmZEufDUTk4A7A=
 go.uber.org/multierr v1.6.0/go.mod h1:cdWPpRnG4AhwMwsgIHip0KRBQjJy5kYEpYjJxpXp9iU=
@@ -455,7 +436,6 @@ golang.org/x/net v0.0.0-20190311183353-d8887717615a/go.mod h1:t9HGtf8HONx5eT2rtn
 golang.org/x/net v0.0.0-20190404232315-eb5bcb51f2a3/go.mod h1:t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg=
 golang.org/x/net v0.0.0-20190620200207-3b0461eec859/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
 golang.org/x/net v0.0.0-20200114155413-6afb5195e5aa/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
-golang.org/x/net v0.0.0-20200202094626-16171245cfb2/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
 golang.org/x/net v0.0.0-20200226121028-0de0cce0169b/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
 golang.org/x/net v0.0.0-20200520004742-59133d7f0dd7/go.mod h1:qpuaurCH72eLCgpAm/N6yyVIVM9cpaDIP3A8BGJEC5A=
 golang.org/x/net v0.0.0-20201021035429-f5854403a974/go.mod h1:sp8m0HH+o8qH0wwXwYZr8TS3Oi6o0r6Gce1SSxlDquU=
@@ -472,7 +452,6 @@ golang.org/x/net v0.27.0/go.mod h1:dDi0PyhWNoiUOrAS8uXv/vnScO4wnHQO4mj9fn/RytE=
 golang.org/x/oauth2 v0.0.0-20180821212333-d2e6202438be/go.mod h1:N/0e6XlmueqKjAGxoOufVs8QHGRruUQn6yWY3a++T0U=
 golang.org/x/sync v0.0.0-20180314180146-1d60e4601c6f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
 golang.org/x/sync v0.0.0-20181108010431-42b317875d0f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
-golang.org/x/sync v0.0.0-20190227155943-e225da77a7e6/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
 golang.org/x/sync v0.0.0-20190423024810-112230192c58/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
 golang.org/x/sync v0.0.0-20190911185100-cd5d95a43a6e/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
 golang.org/x/sync v0.0.0-20201020160332-67f06af15bc9/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
@@ -487,7 +466,6 @@ golang.org/x/sys v0.0.0-20181205085412-a5c9d58dba9a/go.mod h1:STP8DvDyc/dI5b8T5h
 golang.org/x/sys v0.0.0-20190215142949-d0b11bdaac8a/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=
 golang.org/x/sys v0.0.0-20190412213103-97732733099d/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20190422165155-953cdadca894/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
-golang.org/x/sys v0.0.0-20190502145724-3ef323f4f1fd/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20190626221950-04f50cda93cb/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20190904154756-749cb33beabd/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
 golang.org/x/sys v0.0.0-20191005200804-aed5e4c7ecf9/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
@@ -568,7 +546,6 @@ gonum.org/v1/plot v0.0.0-20190515093506-e2840ee46a6b/go.mod h1:Wt8AAjI+ypCyYX3nZ
 google.golang.org/appengine v1.1.0/go.mod h1:EbEs0AVv82hx2wNQdGPgUI5lhzA/G0D9YwlJXL52JkM=
 google.golang.org/appengine v1.4.0/go.mod h1:xpcJRLb0r/rnEns0DIKYYv+WjYCduHsrkT7/EB5XEv4=
 google.golang.org/genproto v0.0.0-20180817151627-c66870c02cf8/go.mod h1:JiN7NxoALGmiZfu7CAH4rXhgtRTLTxftemlI0sWmxmc=
-google.golang.org/genproto v0.0.0-20190425155659-357c62f0e4bb/go.mod h1:VzzqZJRnGkLBvHegQrXjBqPurQTc5/KpmUdxsrq26oE=
 google.golang.org/genproto v0.0.0-20190819201941-24fa4b261c55/go.mod h1:DMBHOl98Agz4BDEuKkezgsaosCRResVns1a3J2ZsMNc=
 google.golang.org/genproto v0.0.0-20200423170343-7949de9c1215/go.mod h1:55QSHmfGQM9UVYDPBsyGGes0y52j32PQ3BqQfXhyH3c=
 google.golang.org/genproto/googleapis/api v0.0.0-20240711142825-46eb208f015d h1:kHjw/5UfflP/L5EbledDrcG4C2597RtymmGRZvHiCuY=
@@ -576,7 +553,6 @@ google.golang.org/genproto/googleapis/api v0.0.0-20240711142825-46eb208f015d/go.
 google.golang.org/genproto/googleapis/rpc v0.0.0-20240711142825-46eb208f015d h1:JU0iKnSg02Gmb5ZdV8nYsKEKsP6o/FGVWTrw4i1DA9A=
 google.golang.org/genproto/googleapis/rpc v0.0.0-20240711142825-46eb208f015d/go.mod h1:Ue6ibwXGpU+dqIcODieyLOcgj7z8+IcskoNIgZxtrFY=
 google.golang.org/grpc v1.19.0/go.mod h1:mqu4LbDTu4XGKhr4mRzUsmM4RtVoemTSY81AxZiDr8c=
-google.golang.org/grpc v1.20.1/go.mod h1:10oTOabMzJvdu6/UiuZezV6QK5dSlG84ov/aaiqXj38=
 google.golang.org/grpc v1.23.0/go.mod h1:Y5yQAOtifL1yxbo5wqy6BxZv8vAUGQwXBOALyacEbxg=
 google.golang.org/grpc v1.25.1/go.mod h1:c3i+UQWmh7LiEpx4sFZnkU36qjEYZ0imhYfXVyQciAY=
 google.golang.org/grpc v1.27.0/go.mod h1:qbnxyOmOxrQa7FizSgH+ReBfzJrCY1pSN7KXBS8abTk=
@@ -597,8 +573,6 @@ gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15/go.mod h1:Co6ibVJAznAaIkqp8
 gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c h1:Hei/4ADfdWqJk1ZMxUNpqntNwaWcugrBjAiHlqqRiVk=
 gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c/go.mod h1:JHkPIbrfpd72SG/EVd6muEfDQjcINNoR0C8j2r3qZ4Q=
 gopkg.in/fsnotify.v1 v1.4.7/go.mod h1:Tz8NjZHkW78fSQdbUxIjBTcgA1z1m8ZHf0WmKUhAMys=
-gopkg.in/olivere/elastic.v5 v5.0.86 h1:xFy6qRCGAmo5Wjx96srho9BitLhZl2fcnpuidPwduXM=
-gopkg.in/olivere/elastic.v5 v5.0.86/go.mod h1:M3WNlsF+WhYn7api4D87NIflwTV/c0iVs8cqfWhK+68=
 gopkg.in/sourcemap.v1 v1.0.5 h1:inv58fC9f9J3TK2Y2R1NPntXEn3/wjWHkonhIUODNTI=
 gopkg.in/sourcemap.v1 v1.0.5/go.mod h1:2RlvNNSMglmRrcvhfuzp4hQHwOtjxlbjX7UPY/GXb78=
 gopkg.in/tomb.v1 v1.0.0-20141024135613-dd632973f1e7 h1:uRGJdciOHaEIrze2W8Q3AKkepLTh2hOroT7a+7czfdQ=
diff --git a/server/server.go b/server/server.go
index d1d915a1..5deb2942 100644
--- a/server/server.go
+++ b/server/server.go
@@ -24,7 +24,6 @@ import (
 	"golang.org/x/net/context"
 	"google.golang.org/grpc"
 
-	"github.com/bmeg/grip/elastic"
 	esql "github.com/bmeg/grip/existing-sql"
 	"github.com/bmeg/grip/grids"
 	"github.com/bmeg/grip/gripper"
@@ -129,8 +128,6 @@ func StartDriver(d config.DriverConfig, sources map[string]gripper.GRIPSourceCli
 		return kvgraph.NewKVGraphDB("pebble", *d.Pebble)
 	} else if d.Grids != nil {
 		return grids.NewGraphDB(*d.Grids)
-	} else if d.Elasticsearch != nil {
-		return elastic.NewGraphDB(*d.Elasticsearch)
 	} else if d.MongoDB != nil {
 		return mongo.NewGraphDB(*d.MongoDB)
 	} else if d.PSQL != nil {
diff --git a/test/elastic.yml b/test/elastic.yml
deleted file mode 100644
index a639cdd8..00000000
--- a/test/elastic.yml
+++ /dev/null
@@ -1,7 +0,0 @@
-Default: elastic
-
-Drivers:
-  elastic:
-    Elasticsearch:
-      URL: http://localhost:19200
-      Synchronous: true
diff --git a/test/main_test.go b/test/main_test.go
index b955d49d..36a71899 100644
--- a/test/main_test.go
+++ b/test/main_test.go
@@ -9,7 +9,6 @@ import (
 	"testing"
 
 	"github.com/bmeg/grip/config"
-	"github.com/bmeg/grip/elastic"
 	esql "github.com/bmeg/grip/existing-sql"
 	"github.com/bmeg/grip/gdbi"
 	"github.com/bmeg/grip/grids"
@@ -132,8 +131,6 @@ func TestMain(m *testing.M) {
 		defer func() {
 			os.RemoveAll(*dbconfig.Grids)
 		}()
-	} else if dbconfig.Elasticsearch != nil {
-		gdb, err = elastic.NewGraphDB(*dbconfig.Elasticsearch)
 	} else if dbconfig.MongoDB != nil {
 		gdb, err = mongo.NewGraphDB(*dbconfig.MongoDB)
 	} else if dbconfig.PSQL != nil {
diff --git a/test/schema_graph_test.go b/test/schema_graph_test.go
index ded42105..ee45d268 100644
--- a/test/schema_graph_test.go
+++ b/test/schema_graph_test.go
@@ -14,7 +14,7 @@ import (
 )
 
 func TestSchema(t *testing.T) {
-	if dbname == "psql" || dbname == "existing-sql" || dbname == "elastic" {
+	if dbname == "psql" || dbname == "existing-sql" {
 		t.Skip("skipping schema test")
 	}
 
diff --git a/website/content/docs.md b/website/content/docs.md
index 266eed9c..1c5f3990 100644
--- a/website/content/docs.md
+++ b/website/content/docs.md
@@ -9,14 +9,14 @@ menu:
 # Overview
 
 GRIP stands for GRaph Integration Platform. It provides a graph interface on top of a variety of existing database technologies including:
-MongoDB, Elasticsearch, PostgreSQL, MySQL, MariaDB, Badger, and LevelDB.
+MongoDB, PostgreSQL, MySQL, MariaDB, Badger, and LevelDB.
 
 Properties of an GRIP graph:
 
-* Both vertices and edges in a graph can have any number of properties associated with them.
-* There are many types of vertices and edges in a graph. Two vertices may have many types of edges
+- Both vertices and edges in a graph can have any number of properties associated with them.
+- There are many types of vertices and edges in a graph. Two vertices may have many types of edges
   connecting them, thus reflecting a myriad of relationship types.
-* Edges in the graph are directed, meaning they have a source and destination.
+- Edges in the graph are directed, meaning they have a source and destination.
 
 GRIP also provides a query API for the traversing, analyzing and manipulating your graphs. Its syntax is inspired by
 [Apache TinkerPop](http://tinkerpop.apache.org/). Learn more [here](/docs/queries/getting_started) about GRIP and its
@@ -26,25 +26,25 @@ application for querying the Bio Medical Evidence Graph ([BMEG](https://bmeg.io)
 
 GRIP has three types of drivers:
 
- - *Embedded* : GRIP has built in graph storage, built using embedded databases. This allows you to quick
- set graphs for data storage and analysis, without having to configure an external database and connect it
- to GRIP. This is the default mode if GRIP is started without any configuration. The primarily driver
- is based on [Badger](https://github.com/dgraph-io/badger).
- - *Database Backends* : GRIP can utilize a number of different database backends to store graph data.
- In this mode, GRIP formats the database and manages the data. It provides a full Read/Write API, the same
- as the Embedded deployment. Supported systems include Mongo, Portgres SQL and Elastic Search. When deployed
- using Mongo, GRIP will translate GripQL queries into [Mongo Aggregation Pipeline queries](https://docs.mongodb.com/manual/core/aggregation-pipeline/).
-  - *Plugin Existing Resources* : This mode is designed to take advantage of existing data resources, mapping
- them into a graph framework so they can be accessed using GripQL. This mode is currently read-only.
+- _Embedded_ : GRIP has built in graph storage, built using embedded databases. This allows you to quick
+  set graphs for data storage and analysis, without having to configure an external database and connect it
+  to GRIP. This is the default mode if GRIP is started without any configuration. The primarily driver
+  is based on [Badger](https://github.com/dgraph-io/badger).
+- _Database Backends_ : GRIP can utilize a number of different database backends to store graph data.
+  In this mode, GRIP formats the database and manages the data. It provides a full Read/Write API, the same
+  as the Embedded deployment. Supported systems include Mongo, Portgres SQL. When deployed
+  using Mongo, GRIP will translate GripQL queries into [Mongo Aggregation Pipeline queries](https://docs.mongodb.com/manual/core/aggregation-pipeline/).
+- _Plugin Existing Resources_ : This mode is designed to take advantage of existing data resources, mapping
+  them into a graph framework so they can be accessed using GripQL. This mode is currently read-only.
 
 # Future Plans
 
 GRIP is still under active development and there are plans for a number of additional features. These include:
 
- - Batch queries. Ability to submit long running queries to be processed asynchronously and stored for later retrieval.
- - Query Caching.
- - Query Continuation. Ability to describe a graph query that starts off where another query ended. For example,
- from batch or cached query and to filtering or a few additional steps.
- - Optimized Plugable External Resource API. Adding additional operations, such as 'joins' or better filtering, to
- external resources would allow GRIP to better optimize queries and reduce query time.
- - Managed Plugin deployment.
+- Batch queries. Ability to submit long running queries to be processed asynchronously and stored for later retrieval.
+- Query Caching.
+- Query Continuation. Ability to describe a graph query that starts off where another query ended. For example,
+  from batch or cached query and to filtering or a few additional steps.
+- Optimized Plugable External Resource API. Adding additional operations, such as 'joins' or better filtering, to
+  external resources would allow GRIP to better optimize queries and reduce query time.
+- Managed Plugin deployment.
diff --git a/website/content/docs/databases/elastic.md b/website/content/docs/databases/elastic.md
deleted file mode 100644
index 4996fa1e..00000000
--- a/website/content/docs/databases/elastic.md
+++ /dev/null
@@ -1,28 +0,0 @@
----
-title: Elasticsearch
-
-menu:
-  main:
-    parent: Databases
-    weight: 1
----
-
-# Elasticsearch
-
-GRIP supports storing vertices and edges in [Elasticsearch][elastic].
-
-Config:
-
-```yaml
-Default: elastic
-
-Drivers:
-  elastic:
-    Elasticsearch:
-      URL: "http://localhost:9200"
-      DBName: "gripdb"
-      Username: ""
-      Password: ""
-```
-
-[elastic]: https://www.elastic.co/
diff --git a/website/layouts/index.html b/website/layouts/index.html
index d6be62aa..eddb8151 100644
--- a/website/layouts/index.html
+++ b/website/layouts/index.html
@@ -1,149 +1,153 @@
-
 {{ partial "head.html" . }}
 
-
    
-  
    GRaph Integration Platform (GRIP)
    
-  Download
-  Documentation
-
    
+
    
+    
    
+        
    GRaph Integration Platform (GRIP)
    
+        Download
+        Documentation
+    
    
+
    
 
 
    
-
-  
    
-
-    
    
-
+    
    
+        
    
     
    
 
-  
    
+    
    
+        
    
+            The GRaph Integration Platform (GRIP) is a graph query engine
+            designed to span across multiple database backends. It supports
+            Mongo, SQL and has a plug in architecture to allow new resource to
+            be added.
+        
    
 
-  
    
-    
    
-      The GRaph Integration Platform (GRIP) is a graph query engine designed to 
-      span across multiple database backends. It supports Mongo, SQL, ElasticSearch
-      and has a plug in architecture to allow new resource to be added.
-    
    
+        
    A quick introduction
    
 
-    
    A quick introduction
    
+        
    
+            
    
+                
    Start an GRIP server
    
+            
    
 
-      
    
-        
    
-          
    Start an GRIP server
    
+            
    
+                
    $ grip server --config grip.yml
    
+            
    
         
    
 
-        
    
-          
    $ grip server --config grip.yml
    
-        
    
-      
    
+        
    
+            
    
+                
    List all graphs
    
+            
    
 
-      
    
-        
    
-          
    List all graphs
    
+            
    
+                
    $ grip list
    
+            
    
         
    
 
-        
    
-          
    $ grip list
    
-        
    
-      
    
+        
    
+            
    
+                
    Create a graph
    
+            
    
 
-      
    
-        
    
-          
    Create a graph
    
+            
    
+                
    $ grip create example
    
+            
    
         
    
 
-        
    
-          
    $ grip create example
    
-        
    
-      
    
+        
    
+            
    
+                
    Drop a graph
    
+            
    
 
-      
    
-        
    
-          
    Drop a graph
    
+            
    
+                
    $ grip drop example
    
+            
    
         
    
 
-        
    
-          
    $ grip drop example
    
-        
    
-      
    
+        
    
+            
    
+                
    Load data into a graph
    
+            
    
 
-      
    
-        
    
-          
    Load data into a  graph
    
+            
    
+                
    $ grip load example --edge edges.txt --vertex vertices.txt
    
+            
    
         
    
 
-        
    
-          
    $ grip load example --edge edges.txt --vertex vertices.txt
    
-        
    
-      
    
+        
    
+            
    
+                
    Query a graph
    
+            
    
 
-      
    
-        
    
-          
    Query a graph
    
+            
    
+                
    $ grip query example 'V().hasLabel("users")'
    
+            
    
         
    
 
-        
    
-          
    $ grip query example 'V().hasLabel("users")'
    
-        
    
-      
    
+        
    
+            
    
+                
    Get vertex/edge counts for a graph
    
+            
    
 
-      
    
-        
    
-          
    Get vertex/edge counts for a graph
    
+            
    
+                
    $ grip info example
    
+            
    
         
    
 
-        
    
-          
    $ grip info example
    
-        
    
-      
    
+        
    
+            
    
+                
    Get the schema for a graph
    
+            
    
 
-      
    
-        
    
-          
    Get the schema for a graph
    
+            
    
+                
    $ grip schema get example
    
+            
    
         
    
 
-        
    
-          
    $ grip schema get example
    
-        
    
-      
    
+        
    
+            
    
+                
    Dump vertices/edges from a graph
    
+            
    
 
-      
    
-        
    
-          
    Dump vertices/edges from a graph
    
+            
    
+                
    $ grip dump example --vertex
    
+            
    
         
    
+    
    
 
-        
    
-          
    $ grip dump example --vertex
    
+    
    
+        
    
+            
    
+                
    Drop in for a chat.
    
+                
    
+                    Join the
+                    Gitter channel.
+                
    
+            
    
+
+            
    
+                
    Get the code.
    
+                
    
+                    Head over to
+                    GitHub and dig
+                    in.
+                
    
+            
    
+
+            
    
+                
    Give feedback.
    
+                
    
+                    Let us know
+                    what you think.
+                
    
+            
    
         
    
-      
    
-
-  
    
-
-  
    
-
-    
    
-
-      
    
-        
    Drop in for a chat.
    
-        
    Join the Gitter channel.
    
-      
    
-
-      
    
-        
    Get the code.
    
-        
    Head over to GitHub and dig in.
    
-      
    
-
-      
    
-        
    Give feedback.
    
-        
    
-          Let us know what you think.
    
-      
    
-
     
    
 
-  
    
-
-  
    
-
+    
    
 
    
 
 {{ partial "tail.html" . }}

From a3ff9025318032870e79c5fb44124d308b545bd7 Mon Sep 17 00:00:00 2001
From: matthewpeterkort 
Date: Wed, 20 Nov 2024 11:27:48 -0800
Subject: [PATCH 21/35] Bugfix protobuf definition

---
 gripql/gripql.pb.go | 4 ++--
 gripql/gripql.proto | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/gripql/gripql.pb.go b/gripql/gripql.pb.go
index 84d92ddf..6e5b0350 100644
--- a/gripql/gripql.pb.go
+++ b/gripql/gripql.pb.go
@@ -2603,7 +2603,7 @@ type BulkJsonEditResult struct {
 	unknownFields protoimpl.UnknownFields
 
 	InsertCount int32    `protobuf:"varint,1,opt,name=insert_count,json=insertCount,proto3" json:"insert_count,omitempty"`
-	Errors      []string `protobuf:"bytes,3,rep,name=errors,proto3" json:"errors,omitempty"`
+	Errors      []string `protobuf:"bytes,2,rep,name=errors,proto3" json:"errors,omitempty"`
 }
 
 func (x *BulkJsonEditResult) Reset() {
@@ -3814,7 +3814,7 @@ var file_gripql_proto_rawDesc = []byte{
 	0x64, 0x69, 0x74, 0x52, 0x65, 0x73, 0x75, 0x6c, 0x74, 0x12, 0x21, 0x0a, 0x0c, 0x69, 0x6e, 0x73,
 	0x65, 0x72, 0x74, 0x5f, 0x63, 0x6f, 0x75, 0x6e, 0x74, 0x18, 0x01, 0x20, 0x01, 0x28, 0x05, 0x52,
 	0x0b, 0x69, 0x6e, 0x73, 0x65, 0x72, 0x74, 0x43, 0x6f, 0x75, 0x6e, 0x74, 0x12, 0x16, 0x0a, 0x06,
-	0x65, 0x72, 0x72, 0x6f, 0x72, 0x73, 0x18, 0x03, 0x20, 0x03, 0x28, 0x09, 0x52, 0x06, 0x65, 0x72,
+	0x65, 0x72, 0x72, 0x6f, 0x72, 0x73, 0x18, 0x02, 0x20, 0x03, 0x28, 0x09, 0x52, 0x06, 0x65, 0x72,
 	0x72, 0x6f, 0x72, 0x73, 0x22, 0x6e, 0x0a, 0x0c, 0x47, 0x72, 0x61, 0x70, 0x68, 0x45, 0x6c, 0x65,
 	0x6d, 0x65, 0x6e, 0x74, 0x12, 0x14, 0x0a, 0x05, 0x67, 0x72, 0x61, 0x70, 0x68, 0x18, 0x01, 0x20,
 	0x01, 0x28, 0x09, 0x52, 0x05, 0x67, 0x72, 0x61, 0x70, 0x68, 0x12, 0x26, 0x0a, 0x06, 0x76, 0x65,
diff --git a/gripql/gripql.proto b/gripql/gripql.proto
index d441cef8..420db336 100644
--- a/gripql/gripql.proto
+++ b/gripql/gripql.proto
@@ -247,7 +247,7 @@ message BulkEditResult {
 
 message BulkJsonEditResult{
     int32 insert_count = 1;
-    repeated string errors = 3;
+    repeated string errors = 2;
 }
 
 message GraphElement {

From 515a682d56f703cee5a9676443ed688bdb788823 Mon Sep 17 00:00:00 2001
From: matthewpeterkort 
Date: Fri, 22 Nov 2024 11:53:22 -0800
Subject: [PATCH 22/35] bugfix, rename cmd

---
 cmd/{caliperload => jsonload}/main.go | 6 +++---
 cmd/root.go                           | 4 ++--
 server/api.go                         | 2 +-
 3 files changed, 6 insertions(+), 6 deletions(-)
 rename cmd/{caliperload => jsonload}/main.go (91%)

diff --git a/cmd/caliperload/main.go b/cmd/jsonload/main.go
similarity index 91%
rename from cmd/caliperload/main.go
rename to cmd/jsonload/main.go
index b9d1264b..bbf51559 100644
--- a/cmd/caliperload/main.go
+++ b/cmd/jsonload/main.go
@@ -1,4 +1,4 @@
-package caliperload
+package jsonload
 
 import (
 	"github.com/bmeg/grip/gripql"
@@ -16,8 +16,8 @@ var project_id string
 var logRate = 10000
 
 var Cmd = &cobra.Command{
-	Use:   "caliperload   ",
-	Short: "Load, Validate NdJson data into Caliper graph",
+	Use:   "jsonload   ",
+	Short: "Load, Validate NdJson data into grip graph",
 	Long:  ``,
 	Args:  cobra.ExactArgs(3),
 	RunE: func(cmd *cobra.Command, args []string) error {
diff --git a/cmd/root.go b/cmd/root.go
index c17cd818..b2a85c8d 100644
--- a/cmd/root.go
+++ b/cmd/root.go
@@ -6,7 +6,6 @@ import (
 	_ "net/http/pprof" // enable pprof via a flag
 	"os"
 
-	"github.com/bmeg/grip/cmd/caliperload"
 	"github.com/bmeg/grip/cmd/create"
 	"github.com/bmeg/grip/cmd/delete"
 	"github.com/bmeg/grip/cmd/drop"
@@ -14,6 +13,7 @@ import (
 	"github.com/bmeg/grip/cmd/erclient"
 	"github.com/bmeg/grip/cmd/info"
 	"github.com/bmeg/grip/cmd/job"
+	"github.com/bmeg/grip/cmd/jsonload"
 	"github.com/bmeg/grip/cmd/kvload"
 	"github.com/bmeg/grip/cmd/list"
 	"github.com/bmeg/grip/cmd/load"
@@ -61,7 +61,7 @@ func init() {
 	RootCmd.AddCommand(job.Cmd)
 	RootCmd.AddCommand(load.Cmd)
 	RootCmd.AddCommand(mongoload.Cmd)
-	RootCmd.AddCommand(caliperload.Cmd)
+	RootCmd.AddCommand(jsonload.Cmd)
 	RootCmd.AddCommand(query.Cmd)
 	RootCmd.AddCommand(erclient.Cmd)
 	RootCmd.AddCommand(rdf.Cmd)
diff --git a/server/api.go b/server/api.go
index 4da5975e..9938d719 100644
--- a/server/api.go
+++ b/server/api.go
@@ -280,7 +280,7 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error
 		resourceType, ok := classData["resourceType"].(string)
 		if !ok {
 			log.WithFields(log.Fields{"error": fmt.Errorf("row %s does not have required field resourceType", classData)}).Error("BulkAddRaw: streaming error")
-			retErrs = append(retErrs, err.Error())
+			retErrs = append(retErrs, fmt.Sprintf("row %s does not have required field resourceType", classData))
 			continue
 		}
 

From 67d787e0b831928e8af083c681f913c735e3d499 Mon Sep 17 00:00:00 2001
From: matthewpeterkort 
Date: Sat, 30 Nov 2024 14:55:36 -0800
Subject: [PATCH 23/35] factor out project_id into an optional extra arg

---
 cmd/jsonload/main.go             |   21 +-
 conformance/tests/ot_bulk_raw.py |    9 +-
 go.mod                           |    3 +-
 go.sum                           |    6 +
 gripql/gripql.pb.go              |  757 ++++++------
 gripql/gripql.pb.gw.go           | 1875 ++++++++----------------------
 gripql/gripql.proto              |    2 +-
 gripql/python/gripql/graph.py    |    7 +-
 server/api.go                    |    6 +-
 server/metagraphs.go             |    2 +-
 util/file_reader.go              |   11 +-
 11 files changed, 936 insertions(+), 1763 deletions(-)

diff --git a/cmd/jsonload/main.go b/cmd/jsonload/main.go
index bbf51559..1bf6ecb7 100644
--- a/cmd/jsonload/main.go
+++ b/cmd/jsonload/main.go
@@ -1,6 +1,8 @@
 package jsonload
 
 import (
+	"encoding/json"
+
 	"github.com/bmeg/grip/gripql"
 	"github.com/bmeg/grip/log"
 	"github.com/bmeg/grip/util"
@@ -10,20 +12,29 @@ import (
 
 var host = "localhost:8202"
 var NdJsonFile string
-var workerCount = 1
+var workerCount = 5
 var graph string
-var project_id string
+var ExtraArgs string
 var logRate = 10000
 
 var Cmd = &cobra.Command{
-	Use:   "jsonload   ",
+	Use:   "jsonload   ",
 	Short: "Load, Validate NdJson data into grip graph",
 	Long:  ``,
 	Args:  cobra.ExactArgs(3),
 	RunE: func(cmd *cobra.Command, args []string) error {
 		NdJsonFile = args[0]
 		graph = args[1]
-		project_id = args[2]
+		ExtraArgs = args[2]
+
+		var args_map map[string]any
+		if ExtraArgs != "" {
+			err := json.Unmarshal([]byte(ExtraArgs), &args_map)
+			if err != nil {
+				return err
+			}
+		}
+
 		conn, err := gripql.Connect(rpc.ConfigWithDefaults(host), true)
 		if err != nil {
 			return err
@@ -55,7 +66,7 @@ var Cmd = &cobra.Command{
 			wait <- false
 		}()
 
-		jsonChan, err := util.StreamRawJsonFromFile(NdJsonFile, workerCount, graph, project_id)
+		jsonChan, err := util.StreamRawJsonFromFile(NdJsonFile, workerCount, graph, args_map)
 		if err != nil {
 			return err
 		}
diff --git a/conformance/tests/ot_bulk_raw.py b/conformance/tests/ot_bulk_raw.py
index 21e89980..c50f0796 100644
--- a/conformance/tests/ot_bulk_raw.py
+++ b/conformance/tests/ot_bulk_raw.py
@@ -9,7 +9,7 @@ def test_bulk_add_raw(man):
     # Probably don't want to add a 2MB schema file to the repo so get it via requests instead
     res = requests.get("https://raw.githubusercontent.com/bmeg/iceberg/f1724941fe47df24846135fb515d1b89e791cee3/schemas/graph/graph-fhir.json")
     res.raise_for_status()
-    s = G.addJsonSchema(res.json())
+    G.addJsonSchema(res.json())
 
     bulkRaw = G.bulkAddRaw()
     # fhir data from https://github.com/bmeg/iceberg-schema-tools/tree/main/tests/fixtures/simplify-fhir-hypermedia
@@ -23,8 +23,11 @@ def test_bulk_add_raw(man):
         errors.append(f"Wrong number of errors {len(err['errors'])} != 0")
 
     edge = G.getVertex("838e42fb-a65d-4039-9f83-59c37b1ae889")
-    if "gid" not in edge and edge["gid"] != "838e42fb-a65d-4039-9f83-59c37b1ae889":
-        errors.append(f"bulkraw inserted edge with id 838e42fb-a65d-4039-9f83-59c37b1ae889 not found")
+    if "auth_resource_path" not in edge["data"] or edge["data"]["auth_resource_path"] != "test-data":
+        errors.append("ExtraArg auth_resource_path of value test-data not added to vertex")
+
+    if "gid" not in edge or edge["gid"] != "838e42fb-a65d-4039-9f83-59c37b1ae889":
+        errors.append("bulkraw inserted edge with id 838e42fb-a65d-4039-9f83-59c37b1ae889 not found")
 
     labels = G.listLabels()
     if not all(item in labels['vertexLabels'] for item in ['Condition', 'Patient']) or not all (item in labels['edgeLabels'] for item in ['condition', 'subject_Patient']):
diff --git a/go.mod b/go.mod
index 773a4238..cf980b0d 100644
--- a/go.mod
+++ b/go.mod
@@ -10,7 +10,7 @@ require (
 	github.com/antlr/antlr4/runtime/Go/antlr v1.4.10
 	github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad
 	github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92
-	github.com/bmeg/jsonschemagraph v0.0.3-0.20241113190142-5e57a1561020
+	github.com/bmeg/jsonschemagraph v0.0.3-0.20241130225037-5545ec0ffd4b
 	github.com/boltdb/bolt v1.3.1
 	github.com/casbin/casbin/v2 v2.97.0
 	github.com/cockroachdb/pebble v1.1.1
@@ -58,6 +58,7 @@ require (
 	github.com/DataDog/zstd v1.5.5 // indirect
 	github.com/alevinval/sse v1.0.2 // indirect
 	github.com/beorn7/perks v1.0.1 // indirect
+	github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc // indirect
 	github.com/casbin/govaluate v1.2.0 // indirect
 	github.com/cespare/xxhash v1.1.0 // indirect
 	github.com/cespare/xxhash/v2 v2.3.0 // indirect
diff --git a/go.sum b/go.sum
index ddac6251..dba87e31 100644
--- a/go.sum
+++ b/go.sum
@@ -29,12 +29,18 @@ github.com/armon/consul-api v0.0.0-20180202201655-eb2c6b5be1b6/go.mod h1:grANhF5
 github.com/benbjohnson/clock v1.1.0/go.mod h1:J11/hYXuz8f4ySSvYwY0FKfm+ezbsZBKZxNJlLklBHA=
 github.com/beorn7/perks v1.0.1 h1:VlbKKnNfV8bJzeqoa4cOKqO6bYr3WgKZxO8Z16+hsOM=
 github.com/beorn7/perks v1.0.1/go.mod h1:G2ZrVWU2WbWT9wwq4/hrbKbnv/1ERSJQ0ibhJ6rlkpw=
+github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc h1:/0v/ZcXYjGs44InmjECrls31onIbVKVu1Q/E2cmnCEU=
+github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc/go.mod h1:hoSeuZtqe58ANXHuWpeODx4bDHGV36QXlCs1yrUvK6M=
 github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad h1:ICgBexeLB7iv/IQz4rsP+MimOXFZUwWSPojEypuOaQ8=
 github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad/go.mod h1:ft96Irkp72C7ZrUWRenG7LrF0NKMxXdRvsypo5Njhm4=
 github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92 h1:Myx/j+WxfEg+P3nDaizR1hBpjKSLgvr4ydzgp1/1pAU=
 github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92/go.mod h1:6v27bSBKXyIDFqlKQbUSnHlekE1y6bDkgWCuVEaDPng=
 github.com/bmeg/jsonschemagraph v0.0.3-0.20241113190142-5e57a1561020 h1:7/dWlBDJdKYhtF31LO8zXcw/IcYsmp/MWpydk6PzuNA=
 github.com/bmeg/jsonschemagraph v0.0.3-0.20241113190142-5e57a1561020/go.mod h1:k04v50661tQFKgYl6drQxWGf9q0dBmKhd6lwIk1rcCw=
+github.com/bmeg/jsonschemagraph v0.0.3-0.20241130214835-4863185c5c72 h1:p8LS6V7vX/Hq+cJl8WvEQZjN2X+xjIXQTuQkstgfG6I=
+github.com/bmeg/jsonschemagraph v0.0.3-0.20241130214835-4863185c5c72/go.mod h1:k04v50661tQFKgYl6drQxWGf9q0dBmKhd6lwIk1rcCw=
+github.com/bmeg/jsonschemagraph v0.0.3-0.20241130225037-5545ec0ffd4b h1:k9j0qId2gRBwYhSdvqlBfQQDNIU4nohG4J9lu9crWE0=
+github.com/bmeg/jsonschemagraph v0.0.3-0.20241130225037-5545ec0ffd4b/go.mod h1:k04v50661tQFKgYl6drQxWGf9q0dBmKhd6lwIk1rcCw=
 github.com/boltdb/bolt v1.3.1 h1:JQmyP4ZBrce+ZQu0dY660FMfatumYDLun9hBCUVIkF4=
 github.com/boltdb/bolt v1.3.1/go.mod h1:clJnj/oiGkjum5o1McbSZDSLxVThjynRyGBgiAx27Ps=
 github.com/bufbuild/protocompile v0.4.0 h1:LbFKd2XowZvQ/kajzguUp2DC9UEIQhIq77fZZlaQsNA=
diff --git a/gripql/gripql.pb.go b/gripql/gripql.pb.go
index 6e5b0350..cc3e9625 100644
--- a/gripql/gripql.pb.go
+++ b/gripql/gripql.pb.go
@@ -3254,7 +3254,7 @@ type RawJson struct {
 	unknownFields protoimpl.UnknownFields
 
 	Graph     string           `protobuf:"bytes,1,opt,name=graph,proto3" json:"graph,omitempty"`
-	ProjectId string           `protobuf:"bytes,2,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
+	ExtraArgs *structpb.Struct `protobuf:"bytes,2,opt,name=extra_args,json=extraArgs,proto3" json:"extra_args,omitempty"`
 	Data      *structpb.Struct `protobuf:"bytes,3,opt,name=data,proto3" json:"data,omitempty"`
 }
 
@@ -3297,11 +3297,11 @@ func (x *RawJson) GetGraph() string {
 	return ""
 }
 
-func (x *RawJson) GetProjectId() string {
+func (x *RawJson) GetExtraArgs() *structpb.Struct {
 	if x != nil {
-		return x.ProjectId
+		return x.ExtraArgs
 	}
-	return ""
+	return nil
 }
 
 func (x *RawJson) GetData() *structpb.Struct {
@@ -3866,248 +3866,250 @@ var file_gripql_proto_rawDesc = []byte{
 	0x70, 0x68, 0x12, 0x1a, 0x0a, 0x08, 0x76, 0x65, 0x72, 0x74, 0x69, 0x63, 0x65, 0x73, 0x18, 0x02,
 	0x20, 0x03, 0x28, 0x09, 0x52, 0x08, 0x76, 0x65, 0x72, 0x74, 0x69, 0x63, 0x65, 0x73, 0x12, 0x14,
 	0x0a, 0x05, 0x65, 0x64, 0x67, 0x65, 0x73, 0x18, 0x03, 0x20, 0x03, 0x28, 0x09, 0x52, 0x05, 0x65,
-	0x64, 0x67, 0x65, 0x73, 0x22, 0x6b, 0x0a, 0x07, 0x52, 0x61, 0x77, 0x4a, 0x73, 0x6f, 0x6e, 0x12,
-	0x14, 0x0a, 0x05, 0x67, 0x72, 0x61, 0x70, 0x68, 0x18, 0x01, 0x20, 0x01, 0x28, 0x09, 0x52, 0x05,
-	0x67, 0x72, 0x61, 0x70, 0x68, 0x12, 0x1d, 0x0a, 0x0a, 0x70, 0x72, 0x6f, 0x6a, 0x65, 0x63, 0x74,
-	0x5f, 0x69, 0x64, 0x18, 0x02, 0x20, 0x01, 0x28, 0x09, 0x52, 0x09, 0x70, 0x72, 0x6f, 0x6a, 0x65,
-	0x63, 0x74, 0x49, 0x64, 0x12, 0x2b, 0x0a, 0x04, 0x64, 0x61, 0x74, 0x61, 0x18, 0x03, 0x20, 0x01,
-	0x28, 0x0b, 0x32, 0x17, 0x2e, 0x67, 0x6f, 0x6f, 0x67, 0x6c, 0x65, 0x2e, 0x70, 0x72, 0x6f, 0x74,
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-	0x61, 0x22, 0xaf, 0x01, 0x0a, 0x0c, 0x50, 0x6c, 0x75, 0x67, 0x69, 0x6e, 0x43, 0x6f, 0x6e, 0x66,
-	0x69, 0x67, 0x12, 0x12, 0x0a, 0x04, 0x6e, 0x61, 0x6d, 0x65, 0x18, 0x01, 0x20, 0x01, 0x28, 0x09,
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 }
 
 var (
@@ -4182,145 +4184,146 @@ var file_gripql_proto_goTypes = []any{
 	(*structpb.Struct)(nil),        // 54: google.protobuf.Struct
 }
 var file_gripql_proto_depIdxs = []int32{
-	25, // 0: gripql.Graph.vertices:type_name -> gripql.Vertex
-	26, // 1: gripql.Graph.edges:type_name -> gripql.Edge
-	6,  // 2: gripql.GraphQuery.query:type_name -> gripql.GraphStatement
-	6,  // 3: gripql.QuerySet.query:type_name -> gripql.GraphStatement
-	52, // 4: gripql.GraphStatement.v:type_name -> google.protobuf.ListValue
-	52, // 5: gripql.GraphStatement.e:type_name -> google.protobuf.ListValue
-	52, // 6: gripql.GraphStatement.in:type_name -> google.protobuf.ListValue
-	52, // 7: gripql.GraphStatement.out:type_name -> google.protobuf.ListValue
-	52, // 8: gripql.GraphStatement.both:type_name -> google.protobuf.ListValue
-	52, // 9: gripql.GraphStatement.in_e:type_name -> google.protobuf.ListValue
-	52, // 10: gripql.GraphStatement.out_e:type_name -> google.protobuf.ListValue
-	52, // 11: gripql.GraphStatement.both_e:type_name -> google.protobuf.ListValue
-	52, // 12: gripql.GraphStatement.in_null:type_name -> google.protobuf.ListValue
-	52, // 13: gripql.GraphStatement.out_null:type_name -> google.protobuf.ListValue
-	52, // 14: gripql.GraphStatement.in_e_null:type_name -> google.protobuf.ListValue
-	52, // 15: gripql.GraphStatement.out_e_null:type_name -> google.protobuf.ListValue
-	7,  // 16: gripql.GraphStatement.range:type_name -> gripql.Range
-	20, // 17: gripql.GraphStatement.has:type_name -> gripql.HasExpression
-	52, // 18: gripql.GraphStatement.has_label:type_name -> google.protobuf.ListValue
-	52, // 19: gripql.GraphStatement.has_key:type_name -> google.protobuf.ListValue
-	52, // 20: gripql.GraphStatement.has_id:type_name -> google.protobuf.ListValue
-	52, // 21: gripql.GraphStatement.distinct:type_name -> google.protobuf.ListValue
-	17, // 22: gripql.GraphStatement.pivot:type_name -> gripql.PivotStep
-	52, // 23: gripql.GraphStatement.fields:type_name -> google.protobuf.ListValue
-	9,  // 24: gripql.GraphStatement.aggregate:type_name -> gripql.Aggregations
-	53, // 25: gripql.GraphStatement.render:type_name -> google.protobuf.Value
-	52, // 26: gripql.GraphStatement.path:type_name -> google.protobuf.ListValue
-	22, // 27: gripql.GraphStatement.jump:type_name -> gripql.Jump
-	23, // 28: gripql.GraphStatement.set:type_name -> gripql.Set
-	24, // 29: gripql.GraphStatement.increment:type_name -> gripql.Increment
-	10, // 30: gripql.AggregationsRequest.aggregations:type_name -> gripql.Aggregate
-	10, // 31: gripql.Aggregations.aggregations:type_name -> gripql.Aggregate
-	11, // 32: gripql.Aggregate.term:type_name -> gripql.TermAggregation
-	12, // 33: gripql.Aggregate.percentile:type_name -> gripql.PercentileAggregation
-	13, // 34: gripql.Aggregate.histogram:type_name -> gripql.HistogramAggregation
-	14, // 35: gripql.Aggregate.field:type_name -> gripql.FieldAggregation
-	15, // 36: gripql.Aggregate.type:type_name -> gripql.TypeAggregation
-	16, // 37: gripql.Aggregate.count:type_name -> gripql.CountAggregation
-	53, // 38: gripql.NamedAggregationResult.key:type_name -> google.protobuf.Value
-	20, // 39: gripql.HasExpressionList.expressions:type_name -> gripql.HasExpression
-	19, // 40: gripql.HasExpression.and:type_name -> gripql.HasExpressionList
-	19, // 41: gripql.HasExpression.or:type_name -> gripql.HasExpressionList
-	20, // 42: gripql.HasExpression.not:type_name -> gripql.HasExpression
-	21, // 43: gripql.HasExpression.condition:type_name -> gripql.HasCondition
-	53, // 44: gripql.HasCondition.value:type_name -> google.protobuf.Value
-	0,  // 45: gripql.HasCondition.condition:type_name -> gripql.Condition
-	20, // 46: gripql.Jump.expression:type_name -> gripql.HasExpression
-	53, // 47: gripql.Set.value:type_name -> google.protobuf.Value
-	54, // 48: gripql.Vertex.data:type_name -> google.protobuf.Struct
-	54, // 49: gripql.Edge.data:type_name -> google.protobuf.Struct
-	25, // 50: gripql.QueryResult.vertex:type_name -> gripql.Vertex
-	26, // 51: gripql.QueryResult.edge:type_name -> gripql.Edge
-	18, // 52: gripql.QueryResult.aggregations:type_name -> gripql.NamedAggregationResult
-	53, // 53: gripql.QueryResult.render:type_name -> google.protobuf.Value
-	52, // 54: gripql.QueryResult.path:type_name -> google.protobuf.ListValue
-	6,  // 55: gripql.ExtendQuery.query:type_name -> gripql.GraphStatement
-	1,  // 56: gripql.JobStatus.state:type_name -> gripql.JobState
-	6,  // 57: gripql.JobStatus.query:type_name -> gripql.GraphStatement
-	25, // 58: gripql.GraphElement.vertex:type_name -> gripql.Vertex
-	26, // 59: gripql.GraphElement.edge:type_name -> gripql.Edge
-	37, // 60: gripql.ListIndicesResponse.indices:type_name -> gripql.IndexID
-	50, // 61: gripql.TableInfo.link_map:type_name -> gripql.TableInfo.LinkMapEntry
-	54, // 62: gripql.RawJson.data:type_name -> google.protobuf.Struct
-	51, // 63: gripql.PluginConfig.config:type_name -> gripql.PluginConfig.ConfigEntry
-	4,  // 64: gripql.Query.Traversal:input_type -> gripql.GraphQuery
-	36, // 65: gripql.Query.GetVertex:input_type -> gripql.ElementID
-	36, // 66: gripql.Query.GetEdge:input_type -> gripql.ElementID
-	35, // 67: gripql.Query.GetTimestamp:input_type -> gripql.GraphID
-	35, // 68: gripql.Query.GetSchema:input_type -> gripql.GraphID
-	35, // 69: gripql.Query.GetMapping:input_type -> gripql.GraphID
-	39, // 70: gripql.Query.ListGraphs:input_type -> gripql.Empty
-	35, // 71: gripql.Query.ListIndices:input_type -> gripql.GraphID
-	35, // 72: gripql.Query.ListLabels:input_type -> gripql.GraphID
-	39, // 73: gripql.Query.ListTables:input_type -> gripql.Empty
-	4,  // 74: gripql.Job.Submit:input_type -> gripql.GraphQuery
-	35, // 75: gripql.Job.ListJobs:input_type -> gripql.GraphID
-	4,  // 76: gripql.Job.SearchJobs:input_type -> gripql.GraphQuery
-	28, // 77: gripql.Job.DeleteJob:input_type -> gripql.QueryJob
-	28, // 78: gripql.Job.GetJob:input_type -> gripql.QueryJob
-	28, // 79: gripql.Job.ViewJob:input_type -> gripql.QueryJob
-	29, // 80: gripql.Job.ResumeJob:input_type -> gripql.ExtendQuery
-	34, // 81: gripql.Edit.AddVertex:input_type -> gripql.GraphElement
-	34, // 82: gripql.Edit.AddEdge:input_type -> gripql.GraphElement
-	34, // 83: gripql.Edit.BulkAdd:input_type -> gripql.GraphElement
-	45, // 84: gripql.Edit.BulkAddRaw:input_type -> gripql.RawJson
-	35, // 85: gripql.Edit.AddGraph:input_type -> gripql.GraphID
-	35, // 86: gripql.Edit.DeleteGraph:input_type -> gripql.GraphID
-	44, // 87: gripql.Edit.BulkDelete:input_type -> gripql.DeleteData
-	36, // 88: gripql.Edit.DeleteVertex:input_type -> gripql.ElementID
-	36, // 89: gripql.Edit.DeleteEdge:input_type -> gripql.ElementID
-	37, // 90: gripql.Edit.AddIndex:input_type -> gripql.IndexID
-	37, // 91: gripql.Edit.DeleteIndex:input_type -> gripql.IndexID
-	3,  // 92: gripql.Edit.AddSchema:input_type -> gripql.Graph
-	45, // 93: gripql.Edit.AddJsonSchema:input_type -> gripql.RawJson
-	35, // 94: gripql.Edit.SampleSchema:input_type -> gripql.GraphID
-	3,  // 95: gripql.Edit.AddMapping:input_type -> gripql.Graph
-	46, // 96: gripql.Configure.StartPlugin:input_type -> gripql.PluginConfig
-	39, // 97: gripql.Configure.ListPlugins:input_type -> gripql.Empty
-	39, // 98: gripql.Configure.ListDrivers:input_type -> gripql.Empty
-	27, // 99: gripql.Query.Traversal:output_type -> gripql.QueryResult
-	25, // 100: gripql.Query.GetVertex:output_type -> gripql.Vertex
-	26, // 101: gripql.Query.GetEdge:output_type -> gripql.Edge
-	38, // 102: gripql.Query.GetTimestamp:output_type -> gripql.Timestamp
-	3,  // 103: gripql.Query.GetSchema:output_type -> gripql.Graph
-	3,  // 104: gripql.Query.GetMapping:output_type -> gripql.Graph
-	40, // 105: gripql.Query.ListGraphs:output_type -> gripql.ListGraphsResponse
-	41, // 106: gripql.Query.ListIndices:output_type -> gripql.ListIndicesResponse
-	42, // 107: gripql.Query.ListLabels:output_type -> gripql.ListLabelsResponse
-	43, // 108: gripql.Query.ListTables:output_type -> gripql.TableInfo
-	28, // 109: gripql.Job.Submit:output_type -> gripql.QueryJob
-	28, // 110: gripql.Job.ListJobs:output_type -> gripql.QueryJob
-	30, // 111: gripql.Job.SearchJobs:output_type -> gripql.JobStatus
-	30, // 112: gripql.Job.DeleteJob:output_type -> gripql.JobStatus
-	30, // 113: gripql.Job.GetJob:output_type -> gripql.JobStatus
-	27, // 114: gripql.Job.ViewJob:output_type -> gripql.QueryResult
-	27, // 115: gripql.Job.ResumeJob:output_type -> gripql.QueryResult
-	31, // 116: gripql.Edit.AddVertex:output_type -> gripql.EditResult
-	31, // 117: gripql.Edit.AddEdge:output_type -> gripql.EditResult
-	32, // 118: gripql.Edit.BulkAdd:output_type -> gripql.BulkEditResult
-	33, // 119: gripql.Edit.BulkAddRaw:output_type -> gripql.BulkJsonEditResult
-	31, // 120: gripql.Edit.AddGraph:output_type -> gripql.EditResult
-	31, // 121: gripql.Edit.DeleteGraph:output_type -> gripql.EditResult
-	31, // 122: gripql.Edit.BulkDelete:output_type -> gripql.EditResult
-	31, // 123: gripql.Edit.DeleteVertex:output_type -> gripql.EditResult
-	31, // 124: gripql.Edit.DeleteEdge:output_type -> gripql.EditResult
-	31, // 125: gripql.Edit.AddIndex:output_type -> gripql.EditResult
-	31, // 126: gripql.Edit.DeleteIndex:output_type -> gripql.EditResult
-	31, // 127: gripql.Edit.AddSchema:output_type -> gripql.EditResult
-	31, // 128: gripql.Edit.AddJsonSchema:output_type -> gripql.EditResult
-	3,  // 129: gripql.Edit.SampleSchema:output_type -> gripql.Graph
-	31, // 130: gripql.Edit.AddMapping:output_type -> gripql.EditResult
-	47, // 131: gripql.Configure.StartPlugin:output_type -> gripql.PluginStatus
-	49, // 132: gripql.Configure.ListPlugins:output_type -> gripql.ListPluginsResponse
-	48, // 133: gripql.Configure.ListDrivers:output_type -> gripql.ListDriversResponse
-	99, // [99:134] is the sub-list for method output_type
-	64, // [64:99] is the sub-list for method input_type
-	64, // [64:64] is the sub-list for extension type_name
-	64, // [64:64] is the sub-list for extension extendee
-	0,  // [0:64] is the sub-list for field type_name
+	25,  // 0: gripql.Graph.vertices:type_name -> gripql.Vertex
+	26,  // 1: gripql.Graph.edges:type_name -> gripql.Edge
+	6,   // 2: gripql.GraphQuery.query:type_name -> gripql.GraphStatement
+	6,   // 3: gripql.QuerySet.query:type_name -> gripql.GraphStatement
+	52,  // 4: gripql.GraphStatement.v:type_name -> google.protobuf.ListValue
+	52,  // 5: gripql.GraphStatement.e:type_name -> google.protobuf.ListValue
+	52,  // 6: gripql.GraphStatement.in:type_name -> google.protobuf.ListValue
+	52,  // 7: gripql.GraphStatement.out:type_name -> google.protobuf.ListValue
+	52,  // 8: gripql.GraphStatement.both:type_name -> google.protobuf.ListValue
+	52,  // 9: gripql.GraphStatement.in_e:type_name -> google.protobuf.ListValue
+	52,  // 10: gripql.GraphStatement.out_e:type_name -> google.protobuf.ListValue
+	52,  // 11: gripql.GraphStatement.both_e:type_name -> google.protobuf.ListValue
+	52,  // 12: gripql.GraphStatement.in_null:type_name -> google.protobuf.ListValue
+	52,  // 13: gripql.GraphStatement.out_null:type_name -> google.protobuf.ListValue
+	52,  // 14: gripql.GraphStatement.in_e_null:type_name -> google.protobuf.ListValue
+	52,  // 15: gripql.GraphStatement.out_e_null:type_name -> google.protobuf.ListValue
+	7,   // 16: gripql.GraphStatement.range:type_name -> gripql.Range
+	20,  // 17: gripql.GraphStatement.has:type_name -> gripql.HasExpression
+	52,  // 18: gripql.GraphStatement.has_label:type_name -> google.protobuf.ListValue
+	52,  // 19: gripql.GraphStatement.has_key:type_name -> google.protobuf.ListValue
+	52,  // 20: gripql.GraphStatement.has_id:type_name -> google.protobuf.ListValue
+	52,  // 21: gripql.GraphStatement.distinct:type_name -> google.protobuf.ListValue
+	17,  // 22: gripql.GraphStatement.pivot:type_name -> gripql.PivotStep
+	52,  // 23: gripql.GraphStatement.fields:type_name -> google.protobuf.ListValue
+	9,   // 24: gripql.GraphStatement.aggregate:type_name -> gripql.Aggregations
+	53,  // 25: gripql.GraphStatement.render:type_name -> google.protobuf.Value
+	52,  // 26: gripql.GraphStatement.path:type_name -> google.protobuf.ListValue
+	22,  // 27: gripql.GraphStatement.jump:type_name -> gripql.Jump
+	23,  // 28: gripql.GraphStatement.set:type_name -> gripql.Set
+	24,  // 29: gripql.GraphStatement.increment:type_name -> gripql.Increment
+	10,  // 30: gripql.AggregationsRequest.aggregations:type_name -> gripql.Aggregate
+	10,  // 31: gripql.Aggregations.aggregations:type_name -> gripql.Aggregate
+	11,  // 32: gripql.Aggregate.term:type_name -> gripql.TermAggregation
+	12,  // 33: gripql.Aggregate.percentile:type_name -> gripql.PercentileAggregation
+	13,  // 34: gripql.Aggregate.histogram:type_name -> gripql.HistogramAggregation
+	14,  // 35: gripql.Aggregate.field:type_name -> gripql.FieldAggregation
+	15,  // 36: gripql.Aggregate.type:type_name -> gripql.TypeAggregation
+	16,  // 37: gripql.Aggregate.count:type_name -> gripql.CountAggregation
+	53,  // 38: gripql.NamedAggregationResult.key:type_name -> google.protobuf.Value
+	20,  // 39: gripql.HasExpressionList.expressions:type_name -> gripql.HasExpression
+	19,  // 40: gripql.HasExpression.and:type_name -> gripql.HasExpressionList
+	19,  // 41: gripql.HasExpression.or:type_name -> gripql.HasExpressionList
+	20,  // 42: gripql.HasExpression.not:type_name -> gripql.HasExpression
+	21,  // 43: gripql.HasExpression.condition:type_name -> gripql.HasCondition
+	53,  // 44: gripql.HasCondition.value:type_name -> google.protobuf.Value
+	0,   // 45: gripql.HasCondition.condition:type_name -> gripql.Condition
+	20,  // 46: gripql.Jump.expression:type_name -> gripql.HasExpression
+	53,  // 47: gripql.Set.value:type_name -> google.protobuf.Value
+	54,  // 48: gripql.Vertex.data:type_name -> google.protobuf.Struct
+	54,  // 49: gripql.Edge.data:type_name -> google.protobuf.Struct
+	25,  // 50: gripql.QueryResult.vertex:type_name -> gripql.Vertex
+	26,  // 51: gripql.QueryResult.edge:type_name -> gripql.Edge
+	18,  // 52: gripql.QueryResult.aggregations:type_name -> gripql.NamedAggregationResult
+	53,  // 53: gripql.QueryResult.render:type_name -> google.protobuf.Value
+	52,  // 54: gripql.QueryResult.path:type_name -> google.protobuf.ListValue
+	6,   // 55: gripql.ExtendQuery.query:type_name -> gripql.GraphStatement
+	1,   // 56: gripql.JobStatus.state:type_name -> gripql.JobState
+	6,   // 57: gripql.JobStatus.query:type_name -> gripql.GraphStatement
+	25,  // 58: gripql.GraphElement.vertex:type_name -> gripql.Vertex
+	26,  // 59: gripql.GraphElement.edge:type_name -> gripql.Edge
+	37,  // 60: gripql.ListIndicesResponse.indices:type_name -> gripql.IndexID
+	50,  // 61: gripql.TableInfo.link_map:type_name -> gripql.TableInfo.LinkMapEntry
+	54,  // 62: gripql.RawJson.extra_args:type_name -> google.protobuf.Struct
+	54,  // 63: gripql.RawJson.data:type_name -> google.protobuf.Struct
+	51,  // 64: gripql.PluginConfig.config:type_name -> gripql.PluginConfig.ConfigEntry
+	4,   // 65: gripql.Query.Traversal:input_type -> gripql.GraphQuery
+	36,  // 66: gripql.Query.GetVertex:input_type -> gripql.ElementID
+	36,  // 67: gripql.Query.GetEdge:input_type -> gripql.ElementID
+	35,  // 68: gripql.Query.GetTimestamp:input_type -> gripql.GraphID
+	35,  // 69: gripql.Query.GetSchema:input_type -> gripql.GraphID
+	35,  // 70: gripql.Query.GetMapping:input_type -> gripql.GraphID
+	39,  // 71: gripql.Query.ListGraphs:input_type -> gripql.Empty
+	35,  // 72: gripql.Query.ListIndices:input_type -> gripql.GraphID
+	35,  // 73: gripql.Query.ListLabels:input_type -> gripql.GraphID
+	39,  // 74: gripql.Query.ListTables:input_type -> gripql.Empty
+	4,   // 75: gripql.Job.Submit:input_type -> gripql.GraphQuery
+	35,  // 76: gripql.Job.ListJobs:input_type -> gripql.GraphID
+	4,   // 77: gripql.Job.SearchJobs:input_type -> gripql.GraphQuery
+	28,  // 78: gripql.Job.DeleteJob:input_type -> gripql.QueryJob
+	28,  // 79: gripql.Job.GetJob:input_type -> gripql.QueryJob
+	28,  // 80: gripql.Job.ViewJob:input_type -> gripql.QueryJob
+	29,  // 81: gripql.Job.ResumeJob:input_type -> gripql.ExtendQuery
+	34,  // 82: gripql.Edit.AddVertex:input_type -> gripql.GraphElement
+	34,  // 83: gripql.Edit.AddEdge:input_type -> gripql.GraphElement
+	34,  // 84: gripql.Edit.BulkAdd:input_type -> gripql.GraphElement
+	45,  // 85: gripql.Edit.BulkAddRaw:input_type -> gripql.RawJson
+	35,  // 86: gripql.Edit.AddGraph:input_type -> gripql.GraphID
+	35,  // 87: gripql.Edit.DeleteGraph:input_type -> gripql.GraphID
+	44,  // 88: gripql.Edit.BulkDelete:input_type -> gripql.DeleteData
+	36,  // 89: gripql.Edit.DeleteVertex:input_type -> gripql.ElementID
+	36,  // 90: gripql.Edit.DeleteEdge:input_type -> gripql.ElementID
+	37,  // 91: gripql.Edit.AddIndex:input_type -> gripql.IndexID
+	37,  // 92: gripql.Edit.DeleteIndex:input_type -> gripql.IndexID
+	3,   // 93: gripql.Edit.AddSchema:input_type -> gripql.Graph
+	45,  // 94: gripql.Edit.AddJsonSchema:input_type -> gripql.RawJson
+	35,  // 95: gripql.Edit.SampleSchema:input_type -> gripql.GraphID
+	3,   // 96: gripql.Edit.AddMapping:input_type -> gripql.Graph
+	46,  // 97: gripql.Configure.StartPlugin:input_type -> gripql.PluginConfig
+	39,  // 98: gripql.Configure.ListPlugins:input_type -> gripql.Empty
+	39,  // 99: gripql.Configure.ListDrivers:input_type -> gripql.Empty
+	27,  // 100: gripql.Query.Traversal:output_type -> gripql.QueryResult
+	25,  // 101: gripql.Query.GetVertex:output_type -> gripql.Vertex
+	26,  // 102: gripql.Query.GetEdge:output_type -> gripql.Edge
+	38,  // 103: gripql.Query.GetTimestamp:output_type -> gripql.Timestamp
+	3,   // 104: gripql.Query.GetSchema:output_type -> gripql.Graph
+	3,   // 105: gripql.Query.GetMapping:output_type -> gripql.Graph
+	40,  // 106: gripql.Query.ListGraphs:output_type -> gripql.ListGraphsResponse
+	41,  // 107: gripql.Query.ListIndices:output_type -> gripql.ListIndicesResponse
+	42,  // 108: gripql.Query.ListLabels:output_type -> gripql.ListLabelsResponse
+	43,  // 109: gripql.Query.ListTables:output_type -> gripql.TableInfo
+	28,  // 110: gripql.Job.Submit:output_type -> gripql.QueryJob
+	28,  // 111: gripql.Job.ListJobs:output_type -> gripql.QueryJob
+	30,  // 112: gripql.Job.SearchJobs:output_type -> gripql.JobStatus
+	30,  // 113: gripql.Job.DeleteJob:output_type -> gripql.JobStatus
+	30,  // 114: gripql.Job.GetJob:output_type -> gripql.JobStatus
+	27,  // 115: gripql.Job.ViewJob:output_type -> gripql.QueryResult
+	27,  // 116: gripql.Job.ResumeJob:output_type -> gripql.QueryResult
+	31,  // 117: gripql.Edit.AddVertex:output_type -> gripql.EditResult
+	31,  // 118: gripql.Edit.AddEdge:output_type -> gripql.EditResult
+	32,  // 119: gripql.Edit.BulkAdd:output_type -> gripql.BulkEditResult
+	33,  // 120: gripql.Edit.BulkAddRaw:output_type -> gripql.BulkJsonEditResult
+	31,  // 121: gripql.Edit.AddGraph:output_type -> gripql.EditResult
+	31,  // 122: gripql.Edit.DeleteGraph:output_type -> gripql.EditResult
+	31,  // 123: gripql.Edit.BulkDelete:output_type -> gripql.EditResult
+	31,  // 124: gripql.Edit.DeleteVertex:output_type -> gripql.EditResult
+	31,  // 125: gripql.Edit.DeleteEdge:output_type -> gripql.EditResult
+	31,  // 126: gripql.Edit.AddIndex:output_type -> gripql.EditResult
+	31,  // 127: gripql.Edit.DeleteIndex:output_type -> gripql.EditResult
+	31,  // 128: gripql.Edit.AddSchema:output_type -> gripql.EditResult
+	31,  // 129: gripql.Edit.AddJsonSchema:output_type -> gripql.EditResult
+	3,   // 130: gripql.Edit.SampleSchema:output_type -> gripql.Graph
+	31,  // 131: gripql.Edit.AddMapping:output_type -> gripql.EditResult
+	47,  // 132: gripql.Configure.StartPlugin:output_type -> gripql.PluginStatus
+	49,  // 133: gripql.Configure.ListPlugins:output_type -> gripql.ListPluginsResponse
+	48,  // 134: gripql.Configure.ListDrivers:output_type -> gripql.ListDriversResponse
+	100, // [100:135] is the sub-list for method output_type
+	65,  // [65:100] is the sub-list for method input_type
+	65,  // [65:65] is the sub-list for extension type_name
+	65,  // [65:65] is the sub-list for extension extendee
+	0,   // [0:65] is the sub-list for field type_name
 }
 
 func init() { file_gripql_proto_init() }
diff --git a/gripql/gripql.pb.gw.go b/gripql/gripql.pb.gw.go
index 07e581fe..096ce86f 100644
--- a/gripql/gripql.pb.gw.go
+++ b/gripql/gripql.pb.gw.go
@@ -10,6 +10,7 @@ package gripql
 
 import (
 	"context"
+	"errors"
 	"io"
 	"net/http"
 
@@ -24,38 +25,33 @@ import (
 )
 
 // Suppress "imported and not used" errors
-var _ codes.Code
-var _ io.Reader
-var _ status.Status
-var _ = runtime.String
-var _ = utilities.NewDoubleArray
-var _ = metadata.Join
+var (
+	_ codes.Code
+	_ io.Reader
+	_ status.Status
+	_ = errors.New
+	_ = runtime.String
+	_ = utilities.NewDoubleArray
+	_ = metadata.Join
+)
 
 func request_Query_Traversal_0(ctx context.Context, marshaler runtime.Marshaler, client QueryClient, req *http.Request, pathParams map[string]string) (Query_TraversalClient, runtime.ServerMetadata, error) {
-	var protoReq GraphQuery
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphQuery
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	stream, err := client.Traversal(ctx, &protoReq)
 	if err != nil {
 		return nil, metadata, err
@@ -66,435 +62,315 @@ func request_Query_Traversal_0(ctx context.Context, marshaler runtime.Marshaler,
 	}
 	metadata.HeaderMD = header
 	return stream, metadata, nil
-
 }
 
 func request_Query_GetVertex_0(ctx context.Context, marshaler runtime.Marshaler, client QueryClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq ElementID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq ElementID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["id"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "id")
 	}
-
 	protoReq.Id, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "id", err)
 	}
-
 	msg, err := client.GetVertex(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Query_GetVertex_0(ctx context.Context, marshaler runtime.Marshaler, server QueryServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq ElementID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq ElementID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["id"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "id")
 	}
-
 	protoReq.Id, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "id", err)
 	}
-
 	msg, err := server.GetVertex(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Query_GetEdge_0(ctx context.Context, marshaler runtime.Marshaler, client QueryClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq ElementID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq ElementID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["id"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "id")
 	}
-
 	protoReq.Id, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "id", err)
 	}
-
 	msg, err := client.GetEdge(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Query_GetEdge_0(ctx context.Context, marshaler runtime.Marshaler, server QueryServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq ElementID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq ElementID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["id"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "id")
 	}
-
 	protoReq.Id, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "id", err)
 	}
-
 	msg, err := server.GetEdge(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Query_GetTimestamp_0(ctx context.Context, marshaler runtime.Marshaler, client QueryClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := client.GetTimestamp(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Query_GetTimestamp_0(ctx context.Context, marshaler runtime.Marshaler, server QueryServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := server.GetTimestamp(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Query_GetSchema_0(ctx context.Context, marshaler runtime.Marshaler, client QueryClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := client.GetSchema(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Query_GetSchema_0(ctx context.Context, marshaler runtime.Marshaler, server QueryServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := server.GetSchema(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Query_GetMapping_0(ctx context.Context, marshaler runtime.Marshaler, client QueryClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := client.GetMapping(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Query_GetMapping_0(ctx context.Context, marshaler runtime.Marshaler, server QueryServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := server.GetMapping(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Query_ListGraphs_0(ctx context.Context, marshaler runtime.Marshaler, client QueryClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq Empty
-	var metadata runtime.ServerMetadata
-
+	var (
+		protoReq Empty
+		metadata runtime.ServerMetadata
+	)
 	msg, err := client.ListGraphs(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Query_ListGraphs_0(ctx context.Context, marshaler runtime.Marshaler, server QueryServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq Empty
-	var metadata runtime.ServerMetadata
-
+	var (
+		protoReq Empty
+		metadata runtime.ServerMetadata
+	)
 	msg, err := server.ListGraphs(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Query_ListIndices_0(ctx context.Context, marshaler runtime.Marshaler, client QueryClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := client.ListIndices(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Query_ListIndices_0(ctx context.Context, marshaler runtime.Marshaler, server QueryServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := server.ListIndices(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Query_ListLabels_0(ctx context.Context, marshaler runtime.Marshaler, client QueryClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := client.ListLabels(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Query_ListLabels_0(ctx context.Context, marshaler runtime.Marshaler, server QueryServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := server.ListLabels(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Query_ListTables_0(ctx context.Context, marshaler runtime.Marshaler, client QueryClient, req *http.Request, pathParams map[string]string) (Query_ListTablesClient, runtime.ServerMetadata, error) {
-	var protoReq Empty
-	var metadata runtime.ServerMetadata
-
+	var (
+		protoReq Empty
+		metadata runtime.ServerMetadata
+	)
 	stream, err := client.ListTables(ctx, &protoReq)
 	if err != nil {
 		return nil, metadata, err
@@ -505,90 +381,64 @@ func request_Query_ListTables_0(ctx context.Context, marshaler runtime.Marshaler
 	}
 	metadata.HeaderMD = header
 	return stream, metadata, nil
-
 }
 
 func request_Job_Submit_0(ctx context.Context, marshaler runtime.Marshaler, client JobClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphQuery
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphQuery
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := client.Submit(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Job_Submit_0(ctx context.Context, marshaler runtime.Marshaler, server JobServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphQuery
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphQuery
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := server.Submit(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Job_ListJobs_0(ctx context.Context, marshaler runtime.Marshaler, client JobClient, req *http.Request, pathParams map[string]string) (Job_ListJobsClient, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	stream, err := client.ListJobs(ctx, &protoReq)
 	if err != nil {
 		return nil, metadata, err
@@ -599,34 +449,25 @@ func request_Job_ListJobs_0(ctx context.Context, marshaler runtime.Marshaler, cl
 	}
 	metadata.HeaderMD = header
 	return stream, metadata, nil
-
 }
 
 func request_Job_SearchJobs_0(ctx context.Context, marshaler runtime.Marshaler, client JobClient, req *http.Request, pathParams map[string]string) (Job_SearchJobsClient, runtime.ServerMetadata, error) {
-	var protoReq GraphQuery
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphQuery
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	stream, err := client.SearchJobs(ctx, &protoReq)
 	if err != nil {
 		return nil, metadata, err
@@ -637,188 +478,137 @@ func request_Job_SearchJobs_0(ctx context.Context, marshaler runtime.Marshaler,
 	}
 	metadata.HeaderMD = header
 	return stream, metadata, nil
-
 }
 
 func request_Job_DeleteJob_0(ctx context.Context, marshaler runtime.Marshaler, client JobClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq QueryJob
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq QueryJob
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["id"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "id")
 	}
-
 	protoReq.Id, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "id", err)
 	}
-
 	msg, err := client.DeleteJob(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Job_DeleteJob_0(ctx context.Context, marshaler runtime.Marshaler, server JobServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq QueryJob
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq QueryJob
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["id"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "id")
 	}
-
 	protoReq.Id, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "id", err)
 	}
-
 	msg, err := server.DeleteJob(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Job_GetJob_0(ctx context.Context, marshaler runtime.Marshaler, client JobClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq QueryJob
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq QueryJob
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["id"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "id")
 	}
-
 	protoReq.Id, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "id", err)
 	}
-
 	msg, err := client.GetJob(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Job_GetJob_0(ctx context.Context, marshaler runtime.Marshaler, server JobServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq QueryJob
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq QueryJob
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["id"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "id")
 	}
-
 	protoReq.Id, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "id", err)
 	}
-
 	msg, err := server.GetJob(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Job_ViewJob_0(ctx context.Context, marshaler runtime.Marshaler, client JobClient, req *http.Request, pathParams map[string]string) (Job_ViewJobClient, runtime.ServerMetadata, error) {
-	var protoReq QueryJob
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq QueryJob
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["id"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "id")
 	}
-
 	protoReq.Id, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "id", err)
 	}
-
 	stream, err := client.ViewJob(ctx, &protoReq)
 	if err != nil {
 		return nil, metadata, err
@@ -829,34 +619,25 @@ func request_Job_ViewJob_0(ctx context.Context, marshaler runtime.Marshaler, cli
 	}
 	metadata.HeaderMD = header
 	return stream, metadata, nil
-
 }
 
 func request_Job_ResumeJob_0(ctx context.Context, marshaler runtime.Marshaler, client JobClient, req *http.Request, pathParams map[string]string) (Job_ResumeJobClient, runtime.ServerMetadata, error) {
-	var protoReq ExtendQuery
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq ExtendQuery
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	stream, err := client.ResumeJob(ctx, &protoReq)
 	if err != nil {
 		return nil, metadata, err
@@ -867,163 +648,118 @@ func request_Job_ResumeJob_0(ctx context.Context, marshaler runtime.Marshaler, c
 	}
 	metadata.HeaderMD = header
 	return stream, metadata, nil
-
 }
 
-var (
-	filter_Edit_AddVertex_0 = &utilities.DoubleArray{Encoding: map[string]int{"vertex": 0, "graph": 1}, Base: []int{1, 1, 2, 0, 0}, Check: []int{0, 1, 1, 2, 3}}
-)
+var filter_Edit_AddVertex_0 = &utilities.DoubleArray{Encoding: map[string]int{"vertex": 0, "graph": 1}, Base: []int{1, 1, 2, 0, 0}, Check: []int{0, 1, 1, 2, 3}}
 
 func request_Edit_AddVertex_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphElement
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq.Vertex); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphElement
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq.Vertex); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	if err := req.ParseForm(); err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
 	}
 	if err := runtime.PopulateQueryParameters(&protoReq, req.Form, filter_Edit_AddVertex_0); err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
 	}
-
 	msg, err := client.AddVertex(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Edit_AddVertex_0(ctx context.Context, marshaler runtime.Marshaler, server EditServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphElement
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq.Vertex); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphElement
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq.Vertex); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	if err := req.ParseForm(); err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
 	}
 	if err := runtime.PopulateQueryParameters(&protoReq, req.Form, filter_Edit_AddVertex_0); err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
 	}
-
 	msg, err := server.AddVertex(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
-var (
-	filter_Edit_AddEdge_0 = &utilities.DoubleArray{Encoding: map[string]int{"edge": 0, "graph": 1}, Base: []int{1, 1, 2, 0, 0}, Check: []int{0, 1, 1, 2, 3}}
-)
+var filter_Edit_AddEdge_0 = &utilities.DoubleArray{Encoding: map[string]int{"edge": 0, "graph": 1}, Base: []int{1, 1, 2, 0, 0}, Check: []int{0, 1, 1, 2, 3}}
 
 func request_Edit_AddEdge_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphElement
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq.Edge); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphElement
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq.Edge); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	if err := req.ParseForm(); err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
 	}
 	if err := runtime.PopulateQueryParameters(&protoReq, req.Form, filter_Edit_AddEdge_0); err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
 	}
-
 	msg, err := client.AddEdge(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Edit_AddEdge_0(ctx context.Context, marshaler runtime.Marshaler, server EditServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphElement
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq.Edge); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphElement
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq.Edge); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	if err := req.ParseForm(); err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
 	}
 	if err := runtime.PopulateQueryParameters(&protoReq, req.Form, filter_Edit_AddEdge_0); err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
 	}
-
 	msg, err := server.AddEdge(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Edit_BulkAdd_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
@@ -1037,7 +773,7 @@ func request_Edit_BulkAdd_0(ctx context.Context, marshaler runtime.Marshaler, cl
 	for {
 		var protoReq GraphElement
 		err = dec.Decode(&protoReq)
-		if err == io.EOF {
+		if errors.Is(err, io.EOF) {
 			break
 		}
 		if err != nil {
@@ -1045,14 +781,13 @@ func request_Edit_BulkAdd_0(ctx context.Context, marshaler runtime.Marshaler, cl
 			return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
 		}
 		if err = stream.Send(&protoReq); err != nil {
-			if err == io.EOF {
+			if errors.Is(err, io.EOF) {
 				break
 			}
 			grpclog.Errorf("Failed to send request: %v", err)
 			return nil, metadata, err
 		}
 	}
-
 	if err := stream.CloseSend(); err != nil {
 		grpclog.Errorf("Failed to terminate client stream: %v", err)
 		return nil, metadata, err
@@ -1063,11 +798,9 @@ func request_Edit_BulkAdd_0(ctx context.Context, marshaler runtime.Marshaler, cl
 		return nil, metadata, err
 	}
 	metadata.HeaderMD = header
-
 	msg, err := stream.CloseAndRecv()
 	metadata.TrailerMD = stream.Trailer()
 	return msg, metadata, err
-
 }
 
 func request_Edit_BulkAddRaw_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
@@ -1081,7 +814,7 @@ func request_Edit_BulkAddRaw_0(ctx context.Context, marshaler runtime.Marshaler,
 	for {
 		var protoReq RawJson
 		err = dec.Decode(&protoReq)
-		if err == io.EOF {
+		if errors.Is(err, io.EOF) {
 			break
 		}
 		if err != nil {
@@ -1089,14 +822,13 @@ func request_Edit_BulkAddRaw_0(ctx context.Context, marshaler runtime.Marshaler,
 			return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
 		}
 		if err = stream.Send(&protoReq); err != nil {
-			if err == io.EOF {
+			if errors.Is(err, io.EOF) {
 				break
 			}
 			grpclog.Errorf("Failed to send request: %v", err)
 			return nil, metadata, err
 		}
 	}
-
 	if err := stream.CloseSend(); err != nil {
 		grpclog.Errorf("Failed to terminate client stream: %v", err)
 		return nil, metadata, err
@@ -1107,785 +839,575 @@ func request_Edit_BulkAddRaw_0(ctx context.Context, marshaler runtime.Marshaler,
 		return nil, metadata, err
 	}
 	metadata.HeaderMD = header
-
 	msg, err := stream.CloseAndRecv()
 	metadata.TrailerMD = stream.Trailer()
 	return msg, metadata, err
-
 }
 
 func request_Edit_AddGraph_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := client.AddGraph(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Edit_AddGraph_0(ctx context.Context, marshaler runtime.Marshaler, server EditServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := server.AddGraph(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Edit_DeleteGraph_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := client.DeleteGraph(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Edit_DeleteGraph_0(ctx context.Context, marshaler runtime.Marshaler, server EditServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := server.DeleteGraph(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Edit_BulkDelete_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq DeleteData
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
+	var (
+		protoReq DeleteData
+		metadata runtime.ServerMetadata
+	)
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
 	}
-
 	msg, err := client.BulkDelete(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Edit_BulkDelete_0(ctx context.Context, marshaler runtime.Marshaler, server EditServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq DeleteData
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
+	var (
+		protoReq DeleteData
+		metadata runtime.ServerMetadata
+	)
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
 	}
-
 	msg, err := server.BulkDelete(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Edit_DeleteVertex_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq ElementID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq ElementID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["id"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "id")
 	}
-
 	protoReq.Id, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "id", err)
 	}
-
 	msg, err := client.DeleteVertex(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Edit_DeleteVertex_0(ctx context.Context, marshaler runtime.Marshaler, server EditServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq ElementID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq ElementID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["id"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "id")
 	}
-
 	protoReq.Id, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "id", err)
 	}
-
 	msg, err := server.DeleteVertex(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Edit_DeleteEdge_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq ElementID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq ElementID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["id"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "id")
 	}
-
 	protoReq.Id, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "id", err)
 	}
-
 	msg, err := client.DeleteEdge(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Edit_DeleteEdge_0(ctx context.Context, marshaler runtime.Marshaler, server EditServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq ElementID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq ElementID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["id"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "id")
 	}
-
 	protoReq.Id, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "id", err)
 	}
-
 	msg, err := server.DeleteEdge(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Edit_AddIndex_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq IndexID
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq IndexID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["label"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "label")
 	}
-
 	protoReq.Label, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "label", err)
 	}
-
 	msg, err := client.AddIndex(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Edit_AddIndex_0(ctx context.Context, marshaler runtime.Marshaler, server EditServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq IndexID
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq IndexID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["label"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "label")
 	}
-
 	protoReq.Label, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "label", err)
 	}
-
 	msg, err := server.AddIndex(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Edit_DeleteIndex_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq IndexID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq IndexID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["label"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "label")
 	}
-
 	protoReq.Label, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "label", err)
 	}
-
 	val, ok = pathParams["field"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "field")
 	}
-
 	protoReq.Field, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "field", err)
 	}
-
 	msg, err := client.DeleteIndex(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Edit_DeleteIndex_0(ctx context.Context, marshaler runtime.Marshaler, server EditServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq IndexID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq IndexID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	val, ok = pathParams["label"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "label")
 	}
-
 	protoReq.Label, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "label", err)
 	}
-
 	val, ok = pathParams["field"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "field")
 	}
-
 	protoReq.Field, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "field", err)
 	}
-
 	msg, err := server.DeleteIndex(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Edit_AddSchema_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq Graph
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq Graph
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := client.AddSchema(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Edit_AddSchema_0(ctx context.Context, marshaler runtime.Marshaler, server EditServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq Graph
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq Graph
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := server.AddSchema(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Edit_AddJsonSchema_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq RawJson
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq RawJson
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := client.AddJsonSchema(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Edit_AddJsonSchema_0(ctx context.Context, marshaler runtime.Marshaler, server EditServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq RawJson
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq RawJson
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := server.AddJsonSchema(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Edit_SampleSchema_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := client.SampleSchema(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Edit_SampleSchema_0(ctx context.Context, marshaler runtime.Marshaler, server EditServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq GraphID
-	var metadata runtime.ServerMetadata
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq GraphID
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := server.SampleSchema(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Edit_AddMapping_0(ctx context.Context, marshaler runtime.Marshaler, client EditClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq Graph
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq Graph
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := client.AddMapping(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Edit_AddMapping_0(ctx context.Context, marshaler runtime.Marshaler, server EditServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq Graph
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq Graph
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["graph"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["graph"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "graph")
 	}
-
 	protoReq.Graph, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "graph", err)
 	}
-
 	msg, err := server.AddMapping(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Configure_StartPlugin_0(ctx context.Context, marshaler runtime.Marshaler, client ConfigureClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq PluginConfig
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq PluginConfig
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["name"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["name"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "name")
 	}
-
 	protoReq.Name, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "name", err)
 	}
-
 	msg, err := client.StartPlugin(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Configure_StartPlugin_0(ctx context.Context, marshaler runtime.Marshaler, server ConfigureServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq PluginConfig
-	var metadata runtime.ServerMetadata
-
-	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && err != io.EOF {
-		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
-	}
-
 	var (
-		val string
-		ok  bool
-		err error
-		_   = err
+		protoReq PluginConfig
+		metadata runtime.ServerMetadata
+		err      error
 	)
-
-	val, ok = pathParams["name"]
+	if err := marshaler.NewDecoder(req.Body).Decode(&protoReq); err != nil && !errors.Is(err, io.EOF) {
+		return nil, metadata, status.Errorf(codes.InvalidArgument, "%v", err)
+	}
+	val, ok := pathParams["name"]
 	if !ok {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "missing parameter %s", "name")
 	}
-
 	protoReq.Name, err = runtime.String(val)
 	if err != nil {
 		return nil, metadata, status.Errorf(codes.InvalidArgument, "type mismatch, parameter: %s, error: %v", "name", err)
 	}
-
 	msg, err := server.StartPlugin(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Configure_ListPlugins_0(ctx context.Context, marshaler runtime.Marshaler, client ConfigureClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq Empty
-	var metadata runtime.ServerMetadata
-
+	var (
+		protoReq Empty
+		metadata runtime.ServerMetadata
+	)
 	msg, err := client.ListPlugins(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Configure_ListPlugins_0(ctx context.Context, marshaler runtime.Marshaler, server ConfigureServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq Empty
-	var metadata runtime.ServerMetadata
-
+	var (
+		protoReq Empty
+		metadata runtime.ServerMetadata
+	)
 	msg, err := server.ListPlugins(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 func request_Configure_ListDrivers_0(ctx context.Context, marshaler runtime.Marshaler, client ConfigureClient, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq Empty
-	var metadata runtime.ServerMetadata
-
+	var (
+		protoReq Empty
+		metadata runtime.ServerMetadata
+	)
 	msg, err := client.ListDrivers(ctx, &protoReq, grpc.Header(&metadata.HeaderMD), grpc.Trailer(&metadata.TrailerMD))
 	return msg, metadata, err
-
 }
 
 func local_request_Configure_ListDrivers_0(ctx context.Context, marshaler runtime.Marshaler, server ConfigureServer, req *http.Request, pathParams map[string]string) (proto.Message, runtime.ServerMetadata, error) {
-	var protoReq Empty
-	var metadata runtime.ServerMetadata
-
+	var (
+		protoReq Empty
+		metadata runtime.ServerMetadata
+	)
 	msg, err := server.ListDrivers(ctx, &protoReq)
 	return msg, metadata, err
-
 }
 
 // RegisterQueryHandlerServer registers the http handlers for service Query to "mux".
@@ -1894,23 +1416,19 @@ func local_request_Configure_ListDrivers_0(ctx context.Context, marshaler runtim
 // Note that using this registration option will cause many gRPC library features to stop working. Consider using RegisterQueryHandlerFromEndpoint instead.
 // GRPC interceptors will not work for this type of registration. To use interceptors, you must use the "runtime.WithMiddlewares" option in the "runtime.NewServeMux" call.
 func RegisterQueryHandlerServer(ctx context.Context, mux *runtime.ServeMux, server QueryServer) error {
-
-	mux.Handle("POST", pattern_Query_Traversal_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Query_Traversal_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		err := status.Error(codes.Unimplemented, "streaming calls are not yet supported in the in-process transport")
 		_, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
 		runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 		return
 	})
-
-	mux.Handle("GET", pattern_Query_GetVertex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_GetVertex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/GetVertex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/vertex/{id}"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/GetVertex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/vertex/{id}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -1922,20 +1440,15 @@ func RegisterQueryHandlerServer(ctx context.Context, mux *runtime.ServeMux, serv
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_GetVertex_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_GetEdge_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_GetEdge_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/GetEdge", runtime.WithHTTPPathPattern("/v1/graph/{graph}/edge/{id}"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/GetEdge", runtime.WithHTTPPathPattern("/v1/graph/{graph}/edge/{id}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -1947,20 +1460,15 @@ func RegisterQueryHandlerServer(ctx context.Context, mux *runtime.ServeMux, serv
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_GetEdge_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_GetTimestamp_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_GetTimestamp_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/GetTimestamp", runtime.WithHTTPPathPattern("/v1/graph/{graph}/timestamp"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/GetTimestamp", runtime.WithHTTPPathPattern("/v1/graph/{graph}/timestamp"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -1972,20 +1480,15 @@ func RegisterQueryHandlerServer(ctx context.Context, mux *runtime.ServeMux, serv
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_GetTimestamp_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_GetSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_GetSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/GetSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/schema"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/GetSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/schema"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -1997,20 +1500,15 @@ func RegisterQueryHandlerServer(ctx context.Context, mux *runtime.ServeMux, serv
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_GetSchema_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_GetMapping_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_GetMapping_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/GetMapping", runtime.WithHTTPPathPattern("/v1/graph/{graph}/mapping"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/GetMapping", runtime.WithHTTPPathPattern("/v1/graph/{graph}/mapping"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2022,20 +1520,15 @@ func RegisterQueryHandlerServer(ctx context.Context, mux *runtime.ServeMux, serv
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_GetMapping_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_ListGraphs_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_ListGraphs_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/ListGraphs", runtime.WithHTTPPathPattern("/v1/graph"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/ListGraphs", runtime.WithHTTPPathPattern("/v1/graph"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2047,20 +1540,15 @@ func RegisterQueryHandlerServer(ctx context.Context, mux *runtime.ServeMux, serv
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_ListGraphs_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_ListIndices_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_ListIndices_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/ListIndices", runtime.WithHTTPPathPattern("/v1/graph/{graph}/index"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/ListIndices", runtime.WithHTTPPathPattern("/v1/graph/{graph}/index"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2072,20 +1560,15 @@ func RegisterQueryHandlerServer(ctx context.Context, mux *runtime.ServeMux, serv
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_ListIndices_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_ListLabels_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_ListLabels_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/ListLabels", runtime.WithHTTPPathPattern("/v1/graph/{graph}/label"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Query/ListLabels", runtime.WithHTTPPathPattern("/v1/graph/{graph}/label"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2097,12 +1580,10 @@ func RegisterQueryHandlerServer(ctx context.Context, mux *runtime.ServeMux, serv
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_ListLabels_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
 
-	mux.Handle("GET", pattern_Query_ListTables_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_ListTables_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		err := status.Error(codes.Unimplemented, "streaming calls are not yet supported in the in-process transport")
 		_, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
 		runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
@@ -2118,16 +1599,13 @@ func RegisterQueryHandlerServer(ctx context.Context, mux *runtime.ServeMux, serv
 // Note that using this registration option will cause many gRPC library features to stop working. Consider using RegisterJobHandlerFromEndpoint instead.
 // GRPC interceptors will not work for this type of registration. To use interceptors, you must use the "runtime.WithMiddlewares" option in the "runtime.NewServeMux" call.
 func RegisterJobHandlerServer(ctx context.Context, mux *runtime.ServeMux, server JobServer) error {
-
-	mux.Handle("POST", pattern_Job_Submit_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Job_Submit_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Job/Submit", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Job/Submit", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2139,34 +1617,29 @@ func RegisterJobHandlerServer(ctx context.Context, mux *runtime.ServeMux, server
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Job_Submit_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
 
-	mux.Handle("GET", pattern_Job_ListJobs_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Job_ListJobs_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		err := status.Error(codes.Unimplemented, "streaming calls are not yet supported in the in-process transport")
 		_, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
 		runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 		return
 	})
 
-	mux.Handle("POST", pattern_Job_SearchJobs_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Job_SearchJobs_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		err := status.Error(codes.Unimplemented, "streaming calls are not yet supported in the in-process transport")
 		_, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
 		runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 		return
 	})
-
-	mux.Handle("DELETE", pattern_Job_DeleteJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodDelete, pattern_Job_DeleteJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Job/DeleteJob", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job/{id}"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Job/DeleteJob", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job/{id}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2178,20 +1651,15 @@ func RegisterJobHandlerServer(ctx context.Context, mux *runtime.ServeMux, server
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Job_DeleteJob_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Job_GetJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Job_GetJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Job/GetJob", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job/{id}"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Job/GetJob", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job/{id}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2203,19 +1671,17 @@ func RegisterJobHandlerServer(ctx context.Context, mux *runtime.ServeMux, server
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Job_GetJob_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
 
-	mux.Handle("POST", pattern_Job_ViewJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Job_ViewJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		err := status.Error(codes.Unimplemented, "streaming calls are not yet supported in the in-process transport")
 		_, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
 		runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 		return
 	})
 
-	mux.Handle("POST", pattern_Job_ResumeJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Job_ResumeJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		err := status.Error(codes.Unimplemented, "streaming calls are not yet supported in the in-process transport")
 		_, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
 		runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
@@ -2231,16 +1697,13 @@ func RegisterJobHandlerServer(ctx context.Context, mux *runtime.ServeMux, server
 // Note that using this registration option will cause many gRPC library features to stop working. Consider using RegisterEditHandlerFromEndpoint instead.
 // GRPC interceptors will not work for this type of registration. To use interceptors, you must use the "runtime.WithMiddlewares" option in the "runtime.NewServeMux" call.
 func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, server EditServer) error {
-
-	mux.Handle("POST", pattern_Edit_AddVertex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_AddVertex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddVertex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/vertex"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddVertex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/vertex"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2252,20 +1715,15 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_AddVertex_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Edit_AddEdge_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_AddEdge_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddEdge", runtime.WithHTTPPathPattern("/v1/graph/{graph}/edge"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddEdge", runtime.WithHTTPPathPattern("/v1/graph/{graph}/edge"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2277,34 +1735,29 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_AddEdge_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
 
-	mux.Handle("POST", pattern_Edit_BulkAdd_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_BulkAdd_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		err := status.Error(codes.Unimplemented, "streaming calls are not yet supported in the in-process transport")
 		_, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
 		runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 		return
 	})
 
-	mux.Handle("POST", pattern_Edit_BulkAddRaw_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_BulkAddRaw_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		err := status.Error(codes.Unimplemented, "streaming calls are not yet supported in the in-process transport")
 		_, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
 		runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 		return
 	})
-
-	mux.Handle("POST", pattern_Edit_AddGraph_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_AddGraph_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddGraph", runtime.WithHTTPPathPattern("/v1/graph/{graph}"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddGraph", runtime.WithHTTPPathPattern("/v1/graph/{graph}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2316,20 +1769,15 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_AddGraph_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("DELETE", pattern_Edit_DeleteGraph_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodDelete, pattern_Edit_DeleteGraph_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/DeleteGraph", runtime.WithHTTPPathPattern("/v1/graph/{graph}"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/DeleteGraph", runtime.WithHTTPPathPattern("/v1/graph/{graph}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2341,20 +1789,15 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_DeleteGraph_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("DELETE", pattern_Edit_BulkDelete_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodDelete, pattern_Edit_BulkDelete_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/BulkDelete", runtime.WithHTTPPathPattern("/v1/graph"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/BulkDelete", runtime.WithHTTPPathPattern("/v1/graph"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2366,20 +1809,15 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_BulkDelete_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("DELETE", pattern_Edit_DeleteVertex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodDelete, pattern_Edit_DeleteVertex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/DeleteVertex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/vertex/{id}"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/DeleteVertex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/vertex/{id}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2391,20 +1829,15 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_DeleteVertex_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("DELETE", pattern_Edit_DeleteEdge_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodDelete, pattern_Edit_DeleteEdge_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/DeleteEdge", runtime.WithHTTPPathPattern("/v1/graph/{graph}/edge/{id}"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/DeleteEdge", runtime.WithHTTPPathPattern("/v1/graph/{graph}/edge/{id}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2416,20 +1849,15 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_DeleteEdge_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Edit_AddIndex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_AddIndex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddIndex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/index/{label}"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddIndex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/index/{label}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2441,20 +1869,15 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_AddIndex_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("DELETE", pattern_Edit_DeleteIndex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodDelete, pattern_Edit_DeleteIndex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/DeleteIndex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/index/{label}/{field}"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/DeleteIndex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/index/{label}/{field}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2466,20 +1889,15 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_DeleteIndex_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Edit_AddSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_AddSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/schema"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/schema"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2491,20 +1909,15 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_AddSchema_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Edit_AddJsonSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_AddJsonSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddJsonSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/jsonschema"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddJsonSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/jsonschema"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2516,20 +1929,15 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_AddJsonSchema_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Edit_SampleSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Edit_SampleSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/SampleSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/schema-sample"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/SampleSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/schema-sample"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2541,20 +1949,15 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_SampleSchema_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Edit_AddMapping_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_AddMapping_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddMapping", runtime.WithHTTPPathPattern("/v1/graph/{graph}/mapping"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Edit/AddMapping", runtime.WithHTTPPathPattern("/v1/graph/{graph}/mapping"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2566,9 +1969,7 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_AddMapping_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
 
 	return nil
@@ -2580,16 +1981,13 @@ func RegisterEditHandlerServer(ctx context.Context, mux *runtime.ServeMux, serve
 // Note that using this registration option will cause many gRPC library features to stop working. Consider using RegisterConfigureHandlerFromEndpoint instead.
 // GRPC interceptors will not work for this type of registration. To use interceptors, you must use the "runtime.WithMiddlewares" option in the "runtime.NewServeMux" call.
 func RegisterConfigureHandlerServer(ctx context.Context, mux *runtime.ServeMux, server ConfigureServer) error {
-
-	mux.Handle("POST", pattern_Configure_StartPlugin_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Configure_StartPlugin_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Configure/StartPlugin", runtime.WithHTTPPathPattern("/v1/plugin/{name}"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Configure/StartPlugin", runtime.WithHTTPPathPattern("/v1/plugin/{name}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2601,20 +1999,15 @@ func RegisterConfigureHandlerServer(ctx context.Context, mux *runtime.ServeMux,
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Configure_StartPlugin_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Configure_ListPlugins_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Configure_ListPlugins_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Configure/ListPlugins", runtime.WithHTTPPathPattern("/v1/plugin"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Configure/ListPlugins", runtime.WithHTTPPathPattern("/v1/plugin"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2626,20 +2019,15 @@ func RegisterConfigureHandlerServer(ctx context.Context, mux *runtime.ServeMux,
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Configure_ListPlugins_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Configure_ListDrivers_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Configure_ListDrivers_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		var stream runtime.ServerTransportStream
 		ctx = grpc.NewContextWithServerTransportStream(ctx, &stream)
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Configure/ListDrivers", runtime.WithHTTPPathPattern("/v1/driver"))
+		annotatedContext, err := runtime.AnnotateIncomingContext(ctx, mux, req, "/gripql.Configure/ListDrivers", runtime.WithHTTPPathPattern("/v1/driver"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2651,9 +2039,7 @@ func RegisterConfigureHandlerServer(ctx context.Context, mux *runtime.ServeMux,
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Configure_ListDrivers_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
 
 	return nil
@@ -2680,7 +2066,6 @@ func RegisterQueryHandlerFromEndpoint(ctx context.Context, mux *runtime.ServeMux
 			}
 		}()
 	}()
-
 	return RegisterQueryHandler(ctx, mux, conn)
 }
 
@@ -2696,14 +2081,11 @@ func RegisterQueryHandler(ctx context.Context, mux *runtime.ServeMux, conn *grpc
 // doesn't go through the normal gRPC flow (creating a gRPC client etc.) then it will be up to the passed in
 // "QueryClient" to call the correct interceptors. This client ignores the HTTP middlewares.
 func RegisterQueryHandlerClient(ctx context.Context, mux *runtime.ServeMux, client QueryClient) error {
-
-	mux.Handle("POST", pattern_Query_Traversal_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Query_Traversal_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/Traversal", runtime.WithHTTPPathPattern("/v1/graph/{graph}/query"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/Traversal", runtime.WithHTTPPathPattern("/v1/graph/{graph}/query"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2714,18 +2096,13 @@ func RegisterQueryHandlerClient(ctx context.Context, mux *runtime.ServeMux, clie
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_Traversal_0(annotatedContext, mux, outboundMarshaler, w, req, func() (proto.Message, error) { return resp.Recv() }, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_GetVertex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_GetVertex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/GetVertex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/vertex/{id}"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/GetVertex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/vertex/{id}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2736,18 +2113,13 @@ func RegisterQueryHandlerClient(ctx context.Context, mux *runtime.ServeMux, clie
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_GetVertex_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_GetEdge_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_GetEdge_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/GetEdge", runtime.WithHTTPPathPattern("/v1/graph/{graph}/edge/{id}"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/GetEdge", runtime.WithHTTPPathPattern("/v1/graph/{graph}/edge/{id}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2758,18 +2130,13 @@ func RegisterQueryHandlerClient(ctx context.Context, mux *runtime.ServeMux, clie
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_GetEdge_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_GetTimestamp_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_GetTimestamp_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/GetTimestamp", runtime.WithHTTPPathPattern("/v1/graph/{graph}/timestamp"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/GetTimestamp", runtime.WithHTTPPathPattern("/v1/graph/{graph}/timestamp"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2780,18 +2147,13 @@ func RegisterQueryHandlerClient(ctx context.Context, mux *runtime.ServeMux, clie
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_GetTimestamp_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_GetSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_GetSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/GetSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/schema"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/GetSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/schema"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2802,18 +2164,13 @@ func RegisterQueryHandlerClient(ctx context.Context, mux *runtime.ServeMux, clie
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_GetSchema_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_GetMapping_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_GetMapping_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/GetMapping", runtime.WithHTTPPathPattern("/v1/graph/{graph}/mapping"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/GetMapping", runtime.WithHTTPPathPattern("/v1/graph/{graph}/mapping"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2824,18 +2181,13 @@ func RegisterQueryHandlerClient(ctx context.Context, mux *runtime.ServeMux, clie
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_GetMapping_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_ListGraphs_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_ListGraphs_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/ListGraphs", runtime.WithHTTPPathPattern("/v1/graph"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/ListGraphs", runtime.WithHTTPPathPattern("/v1/graph"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2846,18 +2198,13 @@ func RegisterQueryHandlerClient(ctx context.Context, mux *runtime.ServeMux, clie
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_ListGraphs_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_ListIndices_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_ListIndices_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/ListIndices", runtime.WithHTTPPathPattern("/v1/graph/{graph}/index"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/ListIndices", runtime.WithHTTPPathPattern("/v1/graph/{graph}/index"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2868,18 +2215,13 @@ func RegisterQueryHandlerClient(ctx context.Context, mux *runtime.ServeMux, clie
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_ListIndices_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_ListLabels_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_ListLabels_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/ListLabels", runtime.WithHTTPPathPattern("/v1/graph/{graph}/label"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/ListLabels", runtime.WithHTTPPathPattern("/v1/graph/{graph}/label"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2890,18 +2232,13 @@ func RegisterQueryHandlerClient(ctx context.Context, mux *runtime.ServeMux, clie
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_ListLabels_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Query_ListTables_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Query_ListTables_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/ListTables", runtime.WithHTTPPathPattern("/v1/table"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Query/ListTables", runtime.WithHTTPPathPattern("/v1/table"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -2912,56 +2249,35 @@ func RegisterQueryHandlerClient(ctx context.Context, mux *runtime.ServeMux, clie
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Query_ListTables_0(annotatedContext, mux, outboundMarshaler, w, req, func() (proto.Message, error) { return resp.Recv() }, mux.GetForwardResponseOptions()...)
-
 	})
-
 	return nil
 }
 
 var (
-	pattern_Query_Traversal_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "query"}, ""))
-
-	pattern_Query_GetVertex_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "vertex", "id"}, ""))
-
-	pattern_Query_GetEdge_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "edge", "id"}, ""))
-
+	pattern_Query_Traversal_0    = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "query"}, ""))
+	pattern_Query_GetVertex_0    = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "vertex", "id"}, ""))
+	pattern_Query_GetEdge_0      = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "edge", "id"}, ""))
 	pattern_Query_GetTimestamp_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "timestamp"}, ""))
-
-	pattern_Query_GetSchema_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "schema"}, ""))
-
-	pattern_Query_GetMapping_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "mapping"}, ""))
-
-	pattern_Query_ListGraphs_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1}, []string{"v1", "graph"}, ""))
-
-	pattern_Query_ListIndices_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "index"}, ""))
-
-	pattern_Query_ListLabels_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "label"}, ""))
-
-	pattern_Query_ListTables_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1}, []string{"v1", "table"}, ""))
+	pattern_Query_GetSchema_0    = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "schema"}, ""))
+	pattern_Query_GetMapping_0   = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "mapping"}, ""))
+	pattern_Query_ListGraphs_0   = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1}, []string{"v1", "graph"}, ""))
+	pattern_Query_ListIndices_0  = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "index"}, ""))
+	pattern_Query_ListLabels_0   = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "label"}, ""))
+	pattern_Query_ListTables_0   = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1}, []string{"v1", "table"}, ""))
 )
 
 var (
-	forward_Query_Traversal_0 = runtime.ForwardResponseStream
-
-	forward_Query_GetVertex_0 = runtime.ForwardResponseMessage
-
-	forward_Query_GetEdge_0 = runtime.ForwardResponseMessage
-
+	forward_Query_Traversal_0    = runtime.ForwardResponseStream
+	forward_Query_GetVertex_0    = runtime.ForwardResponseMessage
+	forward_Query_GetEdge_0      = runtime.ForwardResponseMessage
 	forward_Query_GetTimestamp_0 = runtime.ForwardResponseMessage
-
-	forward_Query_GetSchema_0 = runtime.ForwardResponseMessage
-
-	forward_Query_GetMapping_0 = runtime.ForwardResponseMessage
-
-	forward_Query_ListGraphs_0 = runtime.ForwardResponseMessage
-
-	forward_Query_ListIndices_0 = runtime.ForwardResponseMessage
-
-	forward_Query_ListLabels_0 = runtime.ForwardResponseMessage
-
-	forward_Query_ListTables_0 = runtime.ForwardResponseStream
+	forward_Query_GetSchema_0    = runtime.ForwardResponseMessage
+	forward_Query_GetMapping_0   = runtime.ForwardResponseMessage
+	forward_Query_ListGraphs_0   = runtime.ForwardResponseMessage
+	forward_Query_ListIndices_0  = runtime.ForwardResponseMessage
+	forward_Query_ListLabels_0   = runtime.ForwardResponseMessage
+	forward_Query_ListTables_0   = runtime.ForwardResponseStream
 )
 
 // RegisterJobHandlerFromEndpoint is same as RegisterJobHandler but
@@ -2985,7 +2301,6 @@ func RegisterJobHandlerFromEndpoint(ctx context.Context, mux *runtime.ServeMux,
 			}
 		}()
 	}()
-
 	return RegisterJobHandler(ctx, mux, conn)
 }
 
@@ -3001,14 +2316,11 @@ func RegisterJobHandler(ctx context.Context, mux *runtime.ServeMux, conn *grpc.C
 // doesn't go through the normal gRPC flow (creating a gRPC client etc.) then it will be up to the passed in
 // "JobClient" to call the correct interceptors. This client ignores the HTTP middlewares.
 func RegisterJobHandlerClient(ctx context.Context, mux *runtime.ServeMux, client JobClient) error {
-
-	mux.Handle("POST", pattern_Job_Submit_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Job_Submit_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Job/Submit", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Job/Submit", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3019,18 +2331,13 @@ func RegisterJobHandlerClient(ctx context.Context, mux *runtime.ServeMux, client
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Job_Submit_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Job_ListJobs_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Job_ListJobs_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Job/ListJobs", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Job/ListJobs", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3041,18 +2348,13 @@ func RegisterJobHandlerClient(ctx context.Context, mux *runtime.ServeMux, client
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Job_ListJobs_0(annotatedContext, mux, outboundMarshaler, w, req, func() (proto.Message, error) { return resp.Recv() }, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Job_SearchJobs_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Job_SearchJobs_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Job/SearchJobs", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job-search"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Job/SearchJobs", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job-search"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3063,18 +2365,13 @@ func RegisterJobHandlerClient(ctx context.Context, mux *runtime.ServeMux, client
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Job_SearchJobs_0(annotatedContext, mux, outboundMarshaler, w, req, func() (proto.Message, error) { return resp.Recv() }, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("DELETE", pattern_Job_DeleteJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodDelete, pattern_Job_DeleteJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Job/DeleteJob", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job/{id}"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Job/DeleteJob", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job/{id}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3085,18 +2382,13 @@ func RegisterJobHandlerClient(ctx context.Context, mux *runtime.ServeMux, client
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Job_DeleteJob_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Job_GetJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Job_GetJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Job/GetJob", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job/{id}"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Job/GetJob", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job/{id}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3107,18 +2399,13 @@ func RegisterJobHandlerClient(ctx context.Context, mux *runtime.ServeMux, client
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Job_GetJob_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Job_ViewJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Job_ViewJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Job/ViewJob", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job/{id}"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Job/ViewJob", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job/{id}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3129,18 +2416,13 @@ func RegisterJobHandlerClient(ctx context.Context, mux *runtime.ServeMux, client
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Job_ViewJob_0(annotatedContext, mux, outboundMarshaler, w, req, func() (proto.Message, error) { return resp.Recv() }, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Job_ResumeJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Job_ResumeJob_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Job/ResumeJob", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job-resume"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Job/ResumeJob", runtime.WithHTTPPathPattern("/v1/graph/{graph}/job-resume"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3151,44 +2433,29 @@ func RegisterJobHandlerClient(ctx context.Context, mux *runtime.ServeMux, client
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Job_ResumeJob_0(annotatedContext, mux, outboundMarshaler, w, req, func() (proto.Message, error) { return resp.Recv() }, mux.GetForwardResponseOptions()...)
-
 	})
-
 	return nil
 }
 
 var (
-	pattern_Job_Submit_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "job"}, ""))
-
-	pattern_Job_ListJobs_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "job"}, ""))
-
+	pattern_Job_Submit_0     = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "job"}, ""))
+	pattern_Job_ListJobs_0   = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "job"}, ""))
 	pattern_Job_SearchJobs_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "job-search"}, ""))
-
-	pattern_Job_DeleteJob_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "job", "id"}, ""))
-
-	pattern_Job_GetJob_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "job", "id"}, ""))
-
-	pattern_Job_ViewJob_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "job", "id"}, ""))
-
-	pattern_Job_ResumeJob_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "job-resume"}, ""))
+	pattern_Job_DeleteJob_0  = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "job", "id"}, ""))
+	pattern_Job_GetJob_0     = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "job", "id"}, ""))
+	pattern_Job_ViewJob_0    = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "job", "id"}, ""))
+	pattern_Job_ResumeJob_0  = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "job-resume"}, ""))
 )
 
 var (
-	forward_Job_Submit_0 = runtime.ForwardResponseMessage
-
-	forward_Job_ListJobs_0 = runtime.ForwardResponseStream
-
+	forward_Job_Submit_0     = runtime.ForwardResponseMessage
+	forward_Job_ListJobs_0   = runtime.ForwardResponseStream
 	forward_Job_SearchJobs_0 = runtime.ForwardResponseStream
-
-	forward_Job_DeleteJob_0 = runtime.ForwardResponseMessage
-
-	forward_Job_GetJob_0 = runtime.ForwardResponseMessage
-
-	forward_Job_ViewJob_0 = runtime.ForwardResponseStream
-
-	forward_Job_ResumeJob_0 = runtime.ForwardResponseStream
+	forward_Job_DeleteJob_0  = runtime.ForwardResponseMessage
+	forward_Job_GetJob_0     = runtime.ForwardResponseMessage
+	forward_Job_ViewJob_0    = runtime.ForwardResponseStream
+	forward_Job_ResumeJob_0  = runtime.ForwardResponseStream
 )
 
 // RegisterEditHandlerFromEndpoint is same as RegisterEditHandler but
@@ -3212,7 +2479,6 @@ func RegisterEditHandlerFromEndpoint(ctx context.Context, mux *runtime.ServeMux,
 			}
 		}()
 	}()
-
 	return RegisterEditHandler(ctx, mux, conn)
 }
 
@@ -3228,14 +2494,11 @@ func RegisterEditHandler(ctx context.Context, mux *runtime.ServeMux, conn *grpc.
 // doesn't go through the normal gRPC flow (creating a gRPC client etc.) then it will be up to the passed in
 // "EditClient" to call the correct interceptors. This client ignores the HTTP middlewares.
 func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, client EditClient) error {
-
-	mux.Handle("POST", pattern_Edit_AddVertex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_AddVertex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddVertex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/vertex"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddVertex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/vertex"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3246,18 +2509,13 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_AddVertex_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Edit_AddEdge_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_AddEdge_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddEdge", runtime.WithHTTPPathPattern("/v1/graph/{graph}/edge"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddEdge", runtime.WithHTTPPathPattern("/v1/graph/{graph}/edge"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3268,18 +2526,13 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_AddEdge_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Edit_BulkAdd_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_BulkAdd_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/BulkAdd", runtime.WithHTTPPathPattern("/v1/graph"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/BulkAdd", runtime.WithHTTPPathPattern("/v1/graph"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3290,18 +2543,13 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_BulkAdd_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Edit_BulkAddRaw_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_BulkAddRaw_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/BulkAddRaw", runtime.WithHTTPPathPattern("/v1/rawJson"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/BulkAddRaw", runtime.WithHTTPPathPattern("/v1/rawJson"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3312,18 +2560,13 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_BulkAddRaw_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Edit_AddGraph_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_AddGraph_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddGraph", runtime.WithHTTPPathPattern("/v1/graph/{graph}"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddGraph", runtime.WithHTTPPathPattern("/v1/graph/{graph}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3334,18 +2577,13 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_AddGraph_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("DELETE", pattern_Edit_DeleteGraph_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodDelete, pattern_Edit_DeleteGraph_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/DeleteGraph", runtime.WithHTTPPathPattern("/v1/graph/{graph}"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/DeleteGraph", runtime.WithHTTPPathPattern("/v1/graph/{graph}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3356,18 +2594,13 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_DeleteGraph_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("DELETE", pattern_Edit_BulkDelete_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodDelete, pattern_Edit_BulkDelete_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/BulkDelete", runtime.WithHTTPPathPattern("/v1/graph"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/BulkDelete", runtime.WithHTTPPathPattern("/v1/graph"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3378,18 +2611,13 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_BulkDelete_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("DELETE", pattern_Edit_DeleteVertex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodDelete, pattern_Edit_DeleteVertex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/DeleteVertex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/vertex/{id}"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/DeleteVertex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/vertex/{id}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3400,18 +2628,13 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_DeleteVertex_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("DELETE", pattern_Edit_DeleteEdge_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodDelete, pattern_Edit_DeleteEdge_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/DeleteEdge", runtime.WithHTTPPathPattern("/v1/graph/{graph}/edge/{id}"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/DeleteEdge", runtime.WithHTTPPathPattern("/v1/graph/{graph}/edge/{id}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3422,18 +2645,13 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_DeleteEdge_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Edit_AddIndex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_AddIndex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddIndex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/index/{label}"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddIndex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/index/{label}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3444,18 +2662,13 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_AddIndex_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("DELETE", pattern_Edit_DeleteIndex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodDelete, pattern_Edit_DeleteIndex_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/DeleteIndex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/index/{label}/{field}"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/DeleteIndex", runtime.WithHTTPPathPattern("/v1/graph/{graph}/index/{label}/{field}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3466,18 +2679,13 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_DeleteIndex_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Edit_AddSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_AddSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/schema"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/schema"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3488,18 +2696,13 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_AddSchema_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Edit_AddJsonSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_AddJsonSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddJsonSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/jsonschema"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddJsonSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/jsonschema"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3510,18 +2713,13 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_AddJsonSchema_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Edit_SampleSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Edit_SampleSchema_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/SampleSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/schema-sample"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/SampleSchema", runtime.WithHTTPPathPattern("/v1/graph/{graph}/schema-sample"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3532,18 +2730,13 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_SampleSchema_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("POST", pattern_Edit_AddMapping_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Edit_AddMapping_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddMapping", runtime.WithHTTPPathPattern("/v1/graph/{graph}/mapping"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Edit/AddMapping", runtime.WithHTTPPathPattern("/v1/graph/{graph}/mapping"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3554,76 +2747,45 @@ func RegisterEditHandlerClient(ctx context.Context, mux *runtime.ServeMux, clien
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Edit_AddMapping_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
 	return nil
 }
 
 var (
-	pattern_Edit_AddVertex_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "vertex"}, ""))
-
-	pattern_Edit_AddEdge_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "edge"}, ""))
-
-	pattern_Edit_BulkAdd_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1}, []string{"v1", "graph"}, ""))
-
-	pattern_Edit_BulkAddRaw_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1}, []string{"v1", "rawJson"}, ""))
-
-	pattern_Edit_AddGraph_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1}, []string{"v1", "graph"}, ""))
-
-	pattern_Edit_DeleteGraph_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1}, []string{"v1", "graph"}, ""))
-
-	pattern_Edit_BulkDelete_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1}, []string{"v1", "graph"}, ""))
-
-	pattern_Edit_DeleteVertex_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "vertex", "id"}, ""))
-
-	pattern_Edit_DeleteEdge_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "edge", "id"}, ""))
-
-	pattern_Edit_AddIndex_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "index", "label"}, ""))
-
-	pattern_Edit_DeleteIndex_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3, 1, 0, 4, 1, 5, 4}, []string{"v1", "graph", "index", "label", "field"}, ""))
-
-	pattern_Edit_AddSchema_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "schema"}, ""))
-
+	pattern_Edit_AddVertex_0     = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "vertex"}, ""))
+	pattern_Edit_AddEdge_0       = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "edge"}, ""))
+	pattern_Edit_BulkAdd_0       = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1}, []string{"v1", "graph"}, ""))
+	pattern_Edit_BulkAddRaw_0    = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1}, []string{"v1", "rawJson"}, ""))
+	pattern_Edit_AddGraph_0      = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1}, []string{"v1", "graph"}, ""))
+	pattern_Edit_DeleteGraph_0   = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1}, []string{"v1", "graph"}, ""))
+	pattern_Edit_BulkDelete_0    = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1}, []string{"v1", "graph"}, ""))
+	pattern_Edit_DeleteVertex_0  = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "vertex", "id"}, ""))
+	pattern_Edit_DeleteEdge_0    = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "edge", "id"}, ""))
+	pattern_Edit_AddIndex_0      = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3}, []string{"v1", "graph", "index", "label"}, ""))
+	pattern_Edit_DeleteIndex_0   = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2, 1, 0, 4, 1, 5, 3, 1, 0, 4, 1, 5, 4}, []string{"v1", "graph", "index", "label", "field"}, ""))
+	pattern_Edit_AddSchema_0     = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "schema"}, ""))
 	pattern_Edit_AddJsonSchema_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "jsonschema"}, ""))
-
-	pattern_Edit_SampleSchema_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "schema-sample"}, ""))
-
-	pattern_Edit_AddMapping_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "mapping"}, ""))
+	pattern_Edit_SampleSchema_0  = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "schema-sample"}, ""))
+	pattern_Edit_AddMapping_0    = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 1, 2, 2}, []string{"v1", "graph", "mapping"}, ""))
 )
 
 var (
-	forward_Edit_AddVertex_0 = runtime.ForwardResponseMessage
-
-	forward_Edit_AddEdge_0 = runtime.ForwardResponseMessage
-
-	forward_Edit_BulkAdd_0 = runtime.ForwardResponseMessage
-
-	forward_Edit_BulkAddRaw_0 = runtime.ForwardResponseMessage
-
-	forward_Edit_AddGraph_0 = runtime.ForwardResponseMessage
-
-	forward_Edit_DeleteGraph_0 = runtime.ForwardResponseMessage
-
-	forward_Edit_BulkDelete_0 = runtime.ForwardResponseMessage
-
-	forward_Edit_DeleteVertex_0 = runtime.ForwardResponseMessage
-
-	forward_Edit_DeleteEdge_0 = runtime.ForwardResponseMessage
-
-	forward_Edit_AddIndex_0 = runtime.ForwardResponseMessage
-
-	forward_Edit_DeleteIndex_0 = runtime.ForwardResponseMessage
-
-	forward_Edit_AddSchema_0 = runtime.ForwardResponseMessage
-
+	forward_Edit_AddVertex_0     = runtime.ForwardResponseMessage
+	forward_Edit_AddEdge_0       = runtime.ForwardResponseMessage
+	forward_Edit_BulkAdd_0       = runtime.ForwardResponseMessage
+	forward_Edit_BulkAddRaw_0    = runtime.ForwardResponseMessage
+	forward_Edit_AddGraph_0      = runtime.ForwardResponseMessage
+	forward_Edit_DeleteGraph_0   = runtime.ForwardResponseMessage
+	forward_Edit_BulkDelete_0    = runtime.ForwardResponseMessage
+	forward_Edit_DeleteVertex_0  = runtime.ForwardResponseMessage
+	forward_Edit_DeleteEdge_0    = runtime.ForwardResponseMessage
+	forward_Edit_AddIndex_0      = runtime.ForwardResponseMessage
+	forward_Edit_DeleteIndex_0   = runtime.ForwardResponseMessage
+	forward_Edit_AddSchema_0     = runtime.ForwardResponseMessage
 	forward_Edit_AddJsonSchema_0 = runtime.ForwardResponseMessage
-
-	forward_Edit_SampleSchema_0 = runtime.ForwardResponseMessage
-
-	forward_Edit_AddMapping_0 = runtime.ForwardResponseMessage
+	forward_Edit_SampleSchema_0  = runtime.ForwardResponseMessage
+	forward_Edit_AddMapping_0    = runtime.ForwardResponseMessage
 )
 
 // RegisterConfigureHandlerFromEndpoint is same as RegisterConfigureHandler but
@@ -3647,7 +2809,6 @@ func RegisterConfigureHandlerFromEndpoint(ctx context.Context, mux *runtime.Serv
 			}
 		}()
 	}()
-
 	return RegisterConfigureHandler(ctx, mux, conn)
 }
 
@@ -3663,14 +2824,11 @@ func RegisterConfigureHandler(ctx context.Context, mux *runtime.ServeMux, conn *
 // doesn't go through the normal gRPC flow (creating a gRPC client etc.) then it will be up to the passed in
 // "ConfigureClient" to call the correct interceptors. This client ignores the HTTP middlewares.
 func RegisterConfigureHandlerClient(ctx context.Context, mux *runtime.ServeMux, client ConfigureClient) error {
-
-	mux.Handle("POST", pattern_Configure_StartPlugin_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodPost, pattern_Configure_StartPlugin_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Configure/StartPlugin", runtime.WithHTTPPathPattern("/v1/plugin/{name}"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Configure/StartPlugin", runtime.WithHTTPPathPattern("/v1/plugin/{name}"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3681,18 +2839,13 @@ func RegisterConfigureHandlerClient(ctx context.Context, mux *runtime.ServeMux,
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Configure_StartPlugin_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Configure_ListPlugins_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Configure_ListPlugins_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Configure/ListPlugins", runtime.WithHTTPPathPattern("/v1/plugin"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Configure/ListPlugins", runtime.WithHTTPPathPattern("/v1/plugin"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3703,18 +2856,13 @@ func RegisterConfigureHandlerClient(ctx context.Context, mux *runtime.ServeMux,
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Configure_ListPlugins_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
-	mux.Handle("GET", pattern_Configure_ListDrivers_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
+	mux.Handle(http.MethodGet, pattern_Configure_ListDrivers_0, func(w http.ResponseWriter, req *http.Request, pathParams map[string]string) {
 		ctx, cancel := context.WithCancel(req.Context())
 		defer cancel()
 		inboundMarshaler, outboundMarshaler := runtime.MarshalerForRequest(mux, req)
-		var err error
-		var annotatedContext context.Context
-		annotatedContext, err = runtime.AnnotateContext(ctx, mux, req, "/gripql.Configure/ListDrivers", runtime.WithHTTPPathPattern("/v1/driver"))
+		annotatedContext, err := runtime.AnnotateContext(ctx, mux, req, "/gripql.Configure/ListDrivers", runtime.WithHTTPPathPattern("/v1/driver"))
 		if err != nil {
 			runtime.HTTPError(ctx, mux, outboundMarshaler, w, req, err)
 			return
@@ -3725,26 +2873,19 @@ func RegisterConfigureHandlerClient(ctx context.Context, mux *runtime.ServeMux,
 			runtime.HTTPError(annotatedContext, mux, outboundMarshaler, w, req, err)
 			return
 		}
-
 		forward_Configure_ListDrivers_0(annotatedContext, mux, outboundMarshaler, w, req, resp, mux.GetForwardResponseOptions()...)
-
 	})
-
 	return nil
 }
 
 var (
 	pattern_Configure_StartPlugin_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1, 1, 0, 4, 1, 5, 2}, []string{"v1", "plugin", "name"}, ""))
-
 	pattern_Configure_ListPlugins_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1}, []string{"v1", "plugin"}, ""))
-
 	pattern_Configure_ListDrivers_0 = runtime.MustPattern(runtime.NewPattern(1, []int{2, 0, 2, 1}, []string{"v1", "driver"}, ""))
 )
 
 var (
 	forward_Configure_StartPlugin_0 = runtime.ForwardResponseMessage
-
 	forward_Configure_ListPlugins_0 = runtime.ForwardResponseMessage
-
 	forward_Configure_ListDrivers_0 = runtime.ForwardResponseMessage
 )
diff --git a/gripql/gripql.proto b/gripql/gripql.proto
index 420db336..05808b14 100644
--- a/gripql/gripql.proto
+++ b/gripql/gripql.proto
@@ -314,7 +314,7 @@ message DeleteData {
 
 message RawJson {
   string graph = 1;
-  string project_id = 2;
+  google.protobuf.Struct extra_args = 2;
   google.protobuf.Struct data = 3;
 }
 
diff --git a/gripql/python/gripql/graph.py b/gripql/python/gripql/graph.py
index 7cd630ed..fe186a26 100644
--- a/gripql/python/gripql/graph.py
+++ b/gripql/python/gripql/graph.py
@@ -321,17 +321,18 @@ def execute(self):
 
 
 class BulkAddRaw(BaseConnection):
-    def __init__(self, url, graph, project_id=None, user=None, password=None, token=None, credential_file=None):
+    def __init__(self, url, graph, extraArgs=None, user=None, password=None, token=None, credential_file=None):
         super(BulkAddRaw, self).__init__(url, user, password, token, credential_file)
         self.url = self.base_url + "/v1/rawJson"
         self.graph = graph
-        self.project_id = "test-data"
+        self.extraArgs = {"auth_resource_path": "test-data"}
         self.elements = []
 
+
     def addJson(self, data={}):
         payload = {
             "graph": self.graph,
-            "project_id": self.project_id,
+            "extra_args": self.extraArgs,
             "data": data
         }
         self.elements.append(json.dumps(payload))
diff --git a/server/api.go b/server/api.go
index 9938d719..f17c80ab 100644
--- a/server/api.go
+++ b/server/api.go
@@ -244,7 +244,8 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error
 				retErrs = append(retErrs, err.Error())
 				break
 			}
-			out, err = server.LoadSchemas(class.ProjectId, sch, out)
+
+			out, err = server.LoadSchemas(sch, out)
 			if err != nil {
 				log.Errorf("Error loading schemas: %v", err)
 				retErrs = append(retErrs, err.Error())
@@ -284,7 +285,8 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error
 			continue
 		}
 
-		result, err := out.Generate(resourceType, classData, false, class.ProjectId)
+		args := class.ExtraArgs.AsMap()
+		result, err := out.Generate(resourceType, classData, false, args)
 		if err != nil {
 			log.WithFields(log.Fields{"error": err}).Errorf("BulkAddRaw: validation error for %s: %s", resourceType, classData)
 			retErrs = append(retErrs, err.Error())
diff --git a/server/metagraphs.go b/server/metagraphs.go
index 50cf2d35..7a798ac3 100644
--- a/server/metagraphs.go
+++ b/server/metagraphs.go
@@ -166,7 +166,7 @@ func (server *GripServer) addFullGraph(ctx context.Context, graphName string, sc
 	return nil
 }
 
-func (server *GripServer) LoadSchemas(project_id string, sch *gripql.Graph, out *graph.GraphSchema) (*graph.GraphSchema, error) {
+func (server *GripServer) LoadSchemas(sch *gripql.Graph, out *graph.GraphSchema) (*graph.GraphSchema, error) {
 	schcompiler := jsonschema.NewCompiler()
 	schcompiler.ExtractAnnotations = true
 	schcompiler.RegisterExtension(compile.GraphExtensionTag, compile.GraphExtMeta, compile.GraphExtCompiler{})
diff --git a/util/file_reader.go b/util/file_reader.go
index 18950398..07c9678c 100644
--- a/util/file_reader.go
+++ b/util/file_reader.go
@@ -114,7 +114,7 @@ func StreamLines(file string, chanSize int) (chan string, error) {
 	return lineChan, nil
 }
 
-func StreamRawJsonFromFile(file string, workers int, graph string, project_id string) (chan *gripql.RawJson, error) {
+func StreamRawJsonFromFile(file string, workers int, graph string, extra_args map[string]any) (chan *gripql.RawJson, error) {
 	if workers < 1 {
 		workers = 1
 	}
@@ -136,11 +136,16 @@ func StreamRawJsonFromFile(file string, workers int, graph string, project_id st
 			for line := range lineChan {
 				rawData := &gripql.RawJson{
 					Data:      &structpb.Struct{},
+					ExtraArgs: &structpb.Struct{},
 					Graph:     graph,
-					ProjectId: project_id,
 				}
-				err := jum.Unmarshal([]byte(line), rawData.Data)
 
+				rawData.ExtraArgs, err = structpb.NewStruct(extra_args)
+				if err != nil {
+					log.WithFields(log.Fields{"error": err}).Errorf("Marshalling ExtraArgs: %#v", extra_args)
+					continue
+				}
+				err = jum.Unmarshal([]byte(line), rawData.Data)
 				if err != nil {
 					log.WithFields(log.Fields{"error": err}).Errorf("Unmarshaling vertex: %s", line)
 					continue

From 007f2fc93b78282d5eb71584ca96ed4ea919b76e Mon Sep 17 00:00:00 2001
From: matthewpeterkort 
Date: Tue, 3 Dec 2024 10:31:37 -0800
Subject: [PATCH 24/35] fix docs hostname and schema import name

---
 cmd/load/main.go                              |   3 +-
 docs/categories/index.xml                     |   4 +-
 docs/docs/commands/drop/index.html            |  76 ++++-----
 docs/docs/commands/er/index.html              |  76 ++++-----
 docs/docs/commands/index.html                 |  76 ++++-----
 docs/docs/commands/list/index.html            |  76 ++++-----
 docs/docs/commands/mongoload/index.html       |  76 ++++-----
 docs/docs/commands/query/index.html           |  76 ++++-----
 docs/docs/commands/server/index.html          |  76 ++++-----
 docs/docs/databases/gripper/index.html        |  76 ++++-----
 docs/docs/databases/index.html                |  76 ++++-----
 docs/docs/databases/kvstore/index.html        |  76 ++++-----
 docs/docs/databases/mongo/index.html          |  76 ++++-----
 docs/docs/databases/psql/index.html           |  76 ++++-----
 docs/docs/databases/sql/index.html            |  78 ++++-----
 docs/docs/developers/index.html               |  76 ++++-----
 docs/docs/graphql/graph_schemas/index.html    |  76 ++++-----
 docs/docs/graphql/graphql/index.html          |  76 ++++-----
 docs/docs/graphql/index.html                  |  76 ++++-----
 docs/docs/gripper/graphmodel/index.html       |  76 ++++-----
 docs/docs/gripper/gripper/index.html          |  78 ++++-----
 docs/docs/gripper/index.html                  |  76 ++++-----
 docs/docs/gripper/proxy/index.html            |  76 ++++-----
 docs/docs/index.html                          |  78 ++++-----
 docs/docs/queries/getting_started/index.html  |  80 +++++-----
 docs/docs/queries/index.html                  |  76 ++++-----
 docs/docs/queries/iterations/index.html       |  76 ++++-----
 docs/docs/queries/jobs_api/index.html         |  76 ++++-----
 docs/docs/queries/jsonpath/index.html         |  76 ++++-----
 docs/docs/queries/operations/index.html       |  76 ++++-----
 docs/docs/security/basic/index.html           |  76 ++++-----
 docs/docs/security/index.html                 |  76 ++++-----
 docs/docs/tutorials/amazon/index.html         |  76 ++++-----
 docs/docs/tutorials/index.html                |  76 ++++-----
 .../docs/tutorials/pathway-commons/index.html |  76 ++++-----
 docs/docs/tutorials/tcga-rna/index.html       |  76 ++++-----
 docs/download/index.html                      |  76 ++++-----
 docs/index.html                               |  28 ++--
 docs/index.xml                                | 150 +++++++++---------
 docs/sitemap.xml                              |  76 ++++-----
 docs/tags/index.xml                           |   4 +-
 41 files changed, 1467 insertions(+), 1468 deletions(-)

diff --git a/cmd/load/main.go b/cmd/load/main.go
index 5cdf86a1..ec71c11e 100644
--- a/cmd/load/main.go
+++ b/cmd/load/main.go
@@ -7,7 +7,6 @@ import (
 	"github.com/bmeg/grip/gripql"
 	"github.com/bmeg/grip/log"
 	"github.com/bmeg/grip/schema"
-	graphSchema "github.com/bmeg/grip/schema"
 	"github.com/bmeg/grip/util"
 	"github.com/bmeg/grip/util/rpc"
 	"github.com/spf13/cobra"
@@ -155,7 +154,7 @@ var Cmd = &cobra.Command{
 
 		if jsonFile != "" {
 			log.Infof("Loading json file: %s", jsonFile)
-			graphs, err := graphSchema.ParseJSONGraphsFile(jsonFile)
+			graphs, err := schema.ParseJSONGraphsFile(jsonFile)
 			if err != nil {
 				return err
 			}
diff --git a/docs/categories/index.xml b/docs/categories/index.xml
index 3bffda34..8f7de393 100644
--- a/docs/categories/index.xml
+++ b/docs/categories/index.xml
@@ -2,10 +2,10 @@
 
   
     Categories on GRIP
-    http://localhost:1313/grip/categories/
+    https://bmeg.github.io/grip/categories/
     Recent content in Categories on GRIP
     Hugo
     en-us
-    
+    
   
 
diff --git a/docs/docs/commands/drop/index.html b/docs/docs/commands/drop/index.html
index 4c17e5bf..ca6074bd 100644
--- a/docs/docs/commands/drop/index.html
+++ b/docs/docs/commands/drop/index.html
@@ -1,6 +1,6 @@
 
 
-
+
   
   
 
@@ -12,18 +12,18 @@
   
 
   
-  
-  
-  
-  
-  
+  
+  
+  
+  
+  
   
 
   
-  
-  
+  
+  
 
-  
+  
   
 
 
@@ -32,11 +32,11 @@
   
    
     
    
       
    
-        
    GRIP
    
+        
    GRIP
    
       
    
       
@@ -56,14 +56,14 @@
         
         
  • 
           
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    Connect to an existing SQL database
    
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    Note: This driver is being superseded by the GRIPPER engine
    
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    Note: This driver is being superseded by the GRIPPER engine
    
 
    GRIP supports modeling an existing SQL database as a graph. GRIP has been tested against PostgreSQL, but should  work with
 MySQL (4.1+) and MariaDB.
    
 
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diff --git a/docs/docs/developers/index.html b/docs/docs/developers/index.html
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    GRIP Plugin External Resources
    
 resources as a series of document collections. For example, an SQL gripper would
 plug into an SQL server and provide the tables as a set of collections with each
 every row a document. A gripper is written as a gRPC server.
    
-
    GIPPER Architecture
    
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    Overview
    
 
  • Edges in the graph are directed, meaning they have a source and destination.
    • 
 
 
    GRIP also provides a query API for the traversing, analyzing and manipulating your graphs. Its syntax is inspired by
-Apache TinkerPop. Learn more here about GRIP and its
+Apache TinkerPop. Learn more here about GRIP and its
 application for querying the Bio Medical Evidence Graph (BMEG).
    
 
    Supported Systems
    
 
    GRIP has three types of drivers:
    
diff --git a/docs/docs/queries/getting_started/index.html b/docs/docs/queries/getting_started/index.html
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    Getting Started
    
-
    GRIP has an API for making graph queries using structured data. Queries are defined using a series of step operations.
    
+
    GRIP has an API for making graph queries using structured data. Queries are defined using a series of step operations.
    
 
    Install the Python Client
    
 
    Available on PyPI.
    
 
    pip install gripql
@@ -428,7 +428,7 @@ 
    Install the Python Client
    
   {u'label': u'Transcript', u'gid': u'ENST00000604348'},
   ...
 ]
-
    View a list of all available query operations here.
    
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    • View a list of all available query operations here.
    
 
   
    • 
 
diff --git a/docs/docs/queries/index.html b/docs/docs/queries/index.html
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diff --git a/docs/index.xml b/docs/index.xml
index 28df0421..edfe11f6 100644
--- a/docs/index.xml
+++ b/docs/index.xml
@@ -2,254 +2,254 @@
 
   
     GRIP
-    http://localhost:1313/grip/
+    https://bmeg.github.io/grip/
     Recent content on GRIP
     Hugo
     en-us
-    
+    
     
       
-      http://localhost:1313/grip/docs/tutorials/pathway-commons/
+      https://bmeg.github.io/grip/docs/tutorials/pathway-commons/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/tutorials/pathway-commons/
+      https://bmeg.github.io/grip/docs/tutorials/pathway-commons/
       <p>Get Pathway Commons release</p>
<pre tabindex="0"><code>curl -O http://www.pathwaycommons.org/archives/PC2/v10/PathwayCommons10.All.BIOPAX.owl.gz
</code></pre><p>Convert to Property Graph</p>
<pre tabindex="0"><code>grip rdf --dump --gzip pc PathwayCommons10.All.BIOPAX.owl.gz -m &#34;http://pathwaycommons.org/pc2/#=pc:&#34; -m &#34;http://www.biopax.org/release/biopax-level3.owl#=biopax:&#34;
</code></pre>
     
     
       Amazon Purchase Network
-      http://localhost:1313/grip/docs/tutorials/amazon/
+      https://bmeg.github.io/grip/docs/tutorials/amazon/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/tutorials/amazon/
+      https://bmeg.github.io/grip/docs/tutorials/amazon/
       <h1 id="explore-amazon-product-co-purchasing-network-metadata">Explore Amazon Product Co-Purchasing Network Metadata</h1>
<p>Download the data</p>
<pre tabindex="0"><code>curl -O http://snap.stanford.edu/data/bigdata/amazon/amazon-meta.txt.gz
</code></pre><p>Convert the data into vertices and edges</p>
<pre tabindex="0"><code>python $GOPATH/src/github.com/bmeg/grip/example/amazon_convert.py amazon-meta.txt.gz amazon.data
</code></pre><p>Create a graph called &lsquo;amazon&rsquo;</p>
<pre tabindex="0"><code>grip create amazon
</code></pre><p>Load the vertices/edges into the graph</p>
<pre tabindex="0"><code>grip load amazon --edge amazon.data.edge --vertex amazon.data.vertex
</code></pre><p>Query the graph</p>
<p><em>command line client</em></p>
<pre tabindex="0"><code>grip query amazon &#39;O.query().V().out()&#39;
</code></pre><p><em>python client</em></p>
<pre tabindex="0"><code>pip install &#34;git+https://github.com/bmeg/grip.git#egg=gripql&amp;subdirectory=gripql/python/&#34;
</code></pre><div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span><span style="color:#f92672">import</span> gripql
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span>conn <span style="color:#f92672">=</span> gripql<span style="color:#f92672">.</span>Connection(<span style="color:#e6db74">&#34;http://localhost:8201&#34;</span>)
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span>g <span style="color:#f92672">=</span> conn<span style="color:#f92672">.</span>graph(<span style="color:#e6db74">&#34;amazon&#34;</span>)
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span><span style="color:#75715e"># Count the Vertices</span>
</span></span><span style="display:flex;"><span>print g<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>V()<span style="color:#f92672">.</span>count()<span style="color:#f92672">.</span>execute()
</span></span><span style="display:flex;"><span><span style="color:#75715e"># Count the Edges</span>
</span></span><span style="display:flex;"><span>print g<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>E()<span style="color:#f92672">.</span>count()<span style="color:#f92672">.</span>execute()
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span><span style="color:#75715e"># Try simple travesral</span>
</span></span><span style="display:flex;"><span>print g<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>V(<span style="color:#e6db74">&#34;B00000I06U&#34;</span>)<span style="color:#f92672">.</span>outE()<span style="color:#f92672">.</span>execute()
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span><span style="color:#75715e"># Find every Book that is similar to a DVD</span>
</span></span><span style="display:flex;"><span><span style="color:#66d9ef">for</span> result <span style="color:#f92672">in</span> g<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>V()<span style="color:#f92672">.</span>has(gripql<span style="color:#f92672">.</span>eq(<span style="color:#e6db74">&#34;group&#34;</span>, <span style="color:#e6db74">&#34;Book&#34;</span>))<span style="color:#f92672">.</span>as_(<span style="color:#e6db74">&#34;a&#34;</span>)<span style="color:#f92672">.</span>out(<span style="color:#e6db74">&#34;similar&#34;</span>)<span style="color:#f92672">.</span>has(gripql<span style="color:#f92672">.</span>eq(<span style="color:#e6db74">&#34;group&#34;</span>, <span style="color:#e6db74">&#34;DVD&#34;</span>))<span style="color:#f92672">.</span>as_(<span style="color:#e6db74">&#34;b&#34;</span>)<span style="color:#f92672">.</span>select([<span style="color:#e6db74">&#34;a&#34;</span>, <span style="color:#e6db74">&#34;b&#34;</span>]):
</span></span><span style="display:flex;"><span>    print result
</span></span></code></pre></div>
     
     
       Basic Auth
-      http://localhost:1313/grip/docs/security/basic/
+      https://bmeg.github.io/grip/docs/security/basic/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/security/basic/
+      https://bmeg.github.io/grip/docs/security/basic/
       <h1 id="basic-auth">Basic Auth</h1>
<p>By default, an GRIP server allows open access to its API endpoints, but it
can be configured to require basic password authentication. To enable this,
include users and passwords in your config file:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-yaml" data-lang="yaml"><span style="display:flex;"><span><span style="color:#f92672">Server</span>:
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">BasicAuth</span>:
</span></span><span style="display:flex;"><span>    - <span style="color:#f92672">User</span>: <span style="color:#ae81ff">testuser</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">Password</span>: <span style="color:#ae81ff">abc123</span>
</span></span></code></pre></div><p>Make sure to properly protect the configuration file so that it&rsquo;s not readable
by everyone:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-bash" data-lang="bash"><span style="display:flex;"><span>$ chmod <span style="color:#ae81ff">600</span> grip.config.yml
</span></span></code></pre></div><p>To use the password, set the <code>GRIP_USER</code> and <code>GRIP_PASSWORD</code> environment variables:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-bash" data-lang="bash"><span style="display:flex;"><span>$ export GRIP_USER<span style="color:#f92672">=</span>testuser
</span></span><span style="display:flex;"><span>$ export GRIP_PASSWORD<span style="color:#f92672">=</span>abc123
</span></span><span style="display:flex;"><span>$ grip list
</span></span></code></pre></div><h2 id="using-the-python-client">Using the Python Client</h2>
<p>Some GRIP servers may require authorizaiton to access its API endpoints. The client can be configured to pass
authorization headers in its requests:</p>
     
     
       Database Configuration
-      http://localhost:1313/grip/docs/databases/
+      https://bmeg.github.io/grip/docs/databases/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/databases/
+      https://bmeg.github.io/grip/docs/databases/
       
     
     
       Developers
-      http://localhost:1313/grip/docs/developers/
+      https://bmeg.github.io/grip/docs/developers/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/developers/
+      https://bmeg.github.io/grip/docs/developers/
       
     
     
       Download
-      http://localhost:1313/grip/download/
+      https://bmeg.github.io/grip/download/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/download/
+      https://bmeg.github.io/grip/download/
       <h3>Download </h3>

<ul>
  <li><a href="https://github.com/bmeg/grip/releases/download//grip-linux-amd64-.tar.gz">Linux</a></li>
  <li><a href="https://github.com/bmeg/grip/releases/download//grip-darwin-amd64-.tar.gz">MacOS</a></li>
  <li><small>Windows is not supported sorry!</small></li>
</ul>

<h3 id="release-history">Release History</h3>
<p>See the <a href="https://github.com/bmeg/grip/releases">Releases</a> page for release history.</p>
<h2 id="docker">Docker</h2>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-shell" data-lang="shell"><span style="display:flex;"><span>docker pull bmeg/grip
</span></span><span style="display:flex;"><span>docker run bmeg/grip grip server
</span></span></code></pre></div><!-- raw HTML omitted -->
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-shell" data-lang="shell"><span style="display:flex;"><span>$ git clone https://github.com/bmeg/grip.git
</span></span><span style="display:flex;"><span>$ cd grip
</span></span><span style="display:flex;"><span>$ make
</span></span></code></pre></div>
     
     
       drop
-      http://localhost:1313/grip/docs/commands/drop/
+      https://bmeg.github.io/grip/docs/commands/drop/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/commands/drop/
+      https://bmeg.github.io/grip/docs/commands/drop/
       <pre tabindex="0"><code>grip drop &lt;graph&gt;
</code></pre><p>Deletes a graph.</p>
     
     
       Embedded KV Store
-      http://localhost:1313/grip/docs/databases/kvstore/
+      https://bmeg.github.io/grip/docs/databases/kvstore/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/databases/kvstore/
+      https://bmeg.github.io/grip/docs/databases/kvstore/
       <h1 id="embedded-key-value-stores">Embedded Key Value Stores</h1>
<p>GRIP supports storing vertices and edges in a variety of key-value stores including:</p>
<ul>
<li><a href="https://github.com/dgraph-io/badger">Badger</a></li>
<li><a href="https://github.com/boltdb/bolt">BoltDB</a></li>
<li><a href="https://github.com/syndtr/goleveldb">LevelDB</a></li>
</ul>
<p>Config:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-yaml" data-lang="yaml"><span style="display:flex;"><span><span style="color:#f92672">Default</span>: <span style="color:#ae81ff">kv</span>
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span><span style="color:#f92672">Driver</span>:
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">kv</span>:
</span></span><span style="display:flex;"><span>    <span style="color:#f92672">Badger</span>: <span style="color:#ae81ff">grip.db</span>
</span></span></code></pre></div>
     
     
       er
-      http://localhost:1313/grip/docs/commands/er/
+      https://bmeg.github.io/grip/docs/commands/er/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/commands/er/
+      https://bmeg.github.io/grip/docs/commands/er/
       <pre tabindex="0"><code>grip er
</code></pre><p>The <em>External Resource</em> system allows GRIP to plug into existing data systems and
integrate them into queriable graphs. The <code>grip er</code> sub command acts as a client
to the external resource plugin proxies, issues command and displays the results.
This is often useful for debugging external resources before making them part of
an actual graph.</p>
<p>List collections provided by external resource</p>
<pre tabindex="0"><code>grip er list
</code></pre><p>Get info about a collection</p>
<pre tabindex="0"><code>grip er info
</code></pre><p>List ids from a collection</p>
     
     
       External Resource Proxies
-      http://localhost:1313/grip/docs/gripper/proxy/
+      https://bmeg.github.io/grip/docs/gripper/proxy/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/gripper/proxy/
+      https://bmeg.github.io/grip/docs/gripper/proxy/
       <h1 id="gripper">GRIPPER</h1>
<h2 id="gripper-proxy">GRIPPER proxy</h2>
<p>With the external resources normalized to a single data model, the graph model
describes how to connect the set of collections into a graph model. Each GRIPPER
is required to provide a GRPC interface that allows access to collections stored
in the resource.</p>
<p>The required functions include:</p>
<pre tabindex="0"><code>rpc GetCollections(Empty) returns (stream Collection);
</code></pre><p><code>GetCollections</code> returns a list of all of the Collections accessible via this server.</p>
<pre tabindex="0"><code>rpc GetCollectionInfo(Collection) returns (CollectionInfo);
</code></pre><p><code>GetCollectionInfo</code> provides information, such as the list of indexed fields, in a collection.</p>
     
     
       Getting Started
-      http://localhost:1313/grip/docs/queries/getting_started/
+      https://bmeg.github.io/grip/docs/queries/getting_started/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/queries/getting_started/
-      <h1 id="getting-started">Getting Started</h1>
<p>GRIP has an API for making graph queries using structured data. Queries are defined using a series of step <a href="http://localhost:1313/grip/docs/queries/operations">operations</a>.</p>
<h2 id="install-the-python-client">Install the Python Client</h2>
<p>Available on <a href="https://pypi.org/project/gripql/">PyPI</a>.</p>
<pre tabindex="0"><code>pip install gripql
</code></pre><p>Or install the latest development version:</p>
<pre tabindex="0"><code>pip install &#34;git+https://github.com/bmeg/grip.git#subdirectory=gripql/python&#34;
</code></pre><h2 id="using-the-python-client">Using the Python Client</h2>
<p>Let&rsquo;s go through the features currently supported in the python client.</p>
<p>First, import the client and create a connection to an GRIP server:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span><span style="color:#f92672">import</span> gripql
</span></span><span style="display:flex;"><span>G <span style="color:#f92672">=</span> gripql<span style="color:#f92672">.</span>Connection(<span style="color:#e6db74">&#34;https://bmeg.io&#34;</span>)<span style="color:#f92672">.</span>graph(<span style="color:#e6db74">&#34;bmeg&#34;</span>)
</span></span></code></pre></div><p>Some GRIP servers may require authorizaiton to access its API endpoints. The client can be configured to pass
authorization headers in its requests.</p>
+      https://bmeg.github.io/grip/docs/queries/getting_started/
+      <h1 id="getting-started">Getting Started</h1>
<p>GRIP has an API for making graph queries using structured data. Queries are defined using a series of step <a href="https://bmeg.github.io/grip/docs/queries/operations">operations</a>.</p>
<h2 id="install-the-python-client">Install the Python Client</h2>
<p>Available on <a href="https://pypi.org/project/gripql/">PyPI</a>.</p>
<pre tabindex="0"><code>pip install gripql
</code></pre><p>Or install the latest development version:</p>
<pre tabindex="0"><code>pip install &#34;git+https://github.com/bmeg/grip.git#subdirectory=gripql/python&#34;
</code></pre><h2 id="using-the-python-client">Using the Python Client</h2>
<p>Let&rsquo;s go through the features currently supported in the python client.</p>
<p>First, import the client and create a connection to an GRIP server:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span><span style="color:#f92672">import</span> gripql
</span></span><span style="display:flex;"><span>G <span style="color:#f92672">=</span> gripql<span style="color:#f92672">.</span>Connection(<span style="color:#e6db74">&#34;https://bmeg.io&#34;</span>)<span style="color:#f92672">.</span>graph(<span style="color:#e6db74">&#34;bmeg&#34;</span>)
</span></span></code></pre></div><p>Some GRIP servers may require authorizaiton to access its API endpoints. The client can be configured to pass
authorization headers in its requests.</p>
     
     
       Graph Model
-      http://localhost:1313/grip/docs/gripper/graphmodel/
+      https://bmeg.github.io/grip/docs/gripper/graphmodel/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/gripper/graphmodel/
+      https://bmeg.github.io/grip/docs/gripper/graphmodel/
       <h1 id="gripper">GRIPPER</h1>
<p>GRIP Plugable External Resources</p>
<h2 id="graph-model">Graph Model</h2>
<p>The graph model describes how GRIP will access multiple gripper servers. The mapping
of these data resources is done using a graph. The <code>vertices</code> represent how each vertex
type will be mapped, and the <code>edges</code> describe how edges will be created. The <code>gid</code>
of each vertex represents the prefix domain of all vertices that can be found in that
source.</p>
<p>The <code>sources</code> referenced by the graph are provided to GRIP at run time, each named resource is a
different GRIPPER plugin that abstracts an external resource.
The <code>vertices</code> section describes how different collections
found in these sources will be turned into Vertex found in the graph. Finally, the
<code>edges</code> section describes the different kinds of rules that can be used build the
edges in the graph.</p>
     
     
       Graph Schemas
-      http://localhost:1313/grip/docs/graphql/graph_schemas/
+      https://bmeg.github.io/grip/docs/graphql/graph_schemas/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/graphql/graph_schemas/
+      https://bmeg.github.io/grip/docs/graphql/graph_schemas/
       <h1 id="graph-schemas">Graph Schemas</h1>
<p>Most GRIP based graphs are not required to have a strict schema. However, GraphQL requires
a graph schema as part of it&rsquo;s API. To utilize the GraphQL endpoint, there must be a
Graph Schema provided to be used by the GRIP engine to determine how to render a GraphQL endpoint.
Graph schemas are themselves an instance of a graph. As such, they can be traversed like any other graph.
The schemas are automatically added to the database following the naming pattern. <code>{graph-name}__schema__</code></p>
     
     
       GraphQL
-      http://localhost:1313/grip/docs/graphql/
+      https://bmeg.github.io/grip/docs/graphql/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/graphql/
+      https://bmeg.github.io/grip/docs/graphql/
       
     
     
       GraphQL
-      http://localhost:1313/grip/docs/graphql/graphql/
+      https://bmeg.github.io/grip/docs/graphql/graphql/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/graphql/graphql/
+      https://bmeg.github.io/grip/docs/graphql/graphql/
       <h1 id="graphql">GraphQL</h1>
<p><strong>GraphQL support is considered Alpha. The code is not stable and the API will likely change.</strong>
<strong><em>GraphQL access is only supported when using the MongoDB driver</em></strong></p>
<p>GRIP supports GraphQL access of the property graphs. Currently this is read-only access to the graph.</p>
<h3 id="load-built-in-example-graph">Load built-in example graph</h3>
<p>Loading the example data and the example schema:</p>
<pre tabindex="0"><code>grip load example-graph
</code></pre><p>See the example graph</p>
<pre tabindex="0"><code>grip dump example-graph --vertex --edge
</code></pre><p>Sample components of the graph to produce a schema and store to a file</p>
     
     
       GRIP Commands
-      http://localhost:1313/grip/docs/commands/
+      https://bmeg.github.io/grip/docs/commands/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/commands/
+      https://bmeg.github.io/grip/docs/commands/
       
     
     
       GRIP Plugable External Resources
-      http://localhost:1313/grip/docs/gripper/
+      https://bmeg.github.io/grip/docs/gripper/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/gripper/
+      https://bmeg.github.io/grip/docs/gripper/
       
     
     
       GRIPPER
-      http://localhost:1313/grip/docs/databases/gripper/
+      https://bmeg.github.io/grip/docs/databases/gripper/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/databases/gripper/
+      https://bmeg.github.io/grip/docs/databases/gripper/
       <h1 id="gripper">GRIPPER</h1>
<p>GRIP Plugable External Resources are data systems that GRIP can combine together
to create graphs.</p>
<p>Example:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-yaml" data-lang="yaml"><span style="display:flex;"><span><span style="color:#f92672">Drivers</span>:
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">swapi-driver</span>:
</span></span><span style="display:flex;"><span>    <span style="color:#f92672">Gripper</span>:
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">ConfigFile</span>: <span style="color:#ae81ff">./swapi.yaml</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">Graph</span>: <span style="color:#ae81ff">swapi</span>
</span></span></code></pre></div><p><code>ConfigFile</code> - Path to GRIPPER graph map</p>
<p><code>Graph</code> - Name of the graph for the mapped external resources.</p>
     
     
       Intro
-      http://localhost:1313/grip/docs/gripper/gripper/
+      https://bmeg.github.io/grip/docs/gripper/gripper/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/gripper/gripper/
+      https://bmeg.github.io/grip/docs/gripper/gripper/
       <h1 id="gripper">GRIPPER</h1>
<h2 id="grip-plugin-external-resources">GRIP Plugin External Resources</h2>
<p>GRIP Plugin External Resources (GRIPPERs) are GRIP drivers that take external
resources and allow GRIP to access them are part of a unified graph.
To integrate new resources into the graph, you
first deploy griper proxies that plug into the external resources. They are unique
and configured to access specific resources. These provide a view into external
resources as a series of document collections. For example, an SQL gripper would
plug into an SQL server and provide the tables as a set of collections with each
every row a document. A gripper is written as a gRPC server.</p>
     
     
       Iteration
-      http://localhost:1313/grip/docs/queries/iterations/
+      https://bmeg.github.io/grip/docs/queries/iterations/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/queries/iterations/
+      https://bmeg.github.io/grip/docs/queries/iterations/
       <h1 id="iteration-api">Iteration API</h1>
<p>A common operation in graph search is the ability to iterative repeat a search pattern.
For example, a &lsquo;friend of a friend&rsquo; search may become a &lsquo;friend of a friend of a friend&rsquo; search.</p>
<p>In the GripQL language cycles, iterations and conditional operations are encoded using
&lsquo;mark&rsquo; and &lsquo;jump&rsquo; based interface. This operations are similar to using a &lsquo;goto&rsquo;
statement in a traditional programming language. While more primitive than the
repeat mechanisms seen in Gremlin, this pattern allows for a much more simple
query compilation and implementation.</p>
     
     
       Jobs API
-      http://localhost:1313/grip/docs/queries/jobs_api/
+      https://bmeg.github.io/grip/docs/queries/jobs_api/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/queries/jobs_api/
+      https://bmeg.github.io/grip/docs/queries/jobs_api/
       <h1 id="jobs-api">Jobs API</h1>
<p>Not all queries return instantaneously, additionally some queries elements are used
repeatedly. The query Jobs API provides a mechanism to submit graph traversals
that will be evaluated asynchronously and can be retrieved at a later time.</p>
<h3 id="submitting-a-job">Submitting a job</h3>
<pre tabindex="0"><code>job = G.query().V().hasLabel(&#34;Planet&#34;).out().submit()
</code></pre><h3 id="getting-job-status">Getting job status</h3>
<pre tabindex="0"><code>jinfo = G.getJob(job[&#34;id&#34;])
</code></pre><p>Example job info:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-json" data-lang="json"><span style="display:flex;"><span>{
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">&#34;id&#34;</span>: <span style="color:#e6db74">&#34;job-326392951&#34;</span>,
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">&#34;graph&#34;</span>: <span style="color:#e6db74">&#34;test_graph_qd7rs7&#34;</span>,
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">&#34;state&#34;</span>: <span style="color:#e6db74">&#34;COMPLETE&#34;</span>,
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">&#34;count&#34;</span>: <span style="color:#e6db74">&#34;12&#34;</span>,
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">&#34;query&#34;</span>: [{<span style="color:#f92672">&#34;v&#34;</span>: []}, {<span style="color:#f92672">&#34;hasLabel&#34;</span>: [<span style="color:#e6db74">&#34;Planet&#34;</span>]}, {<span style="color:#f92672">&#34;as&#34;</span>: <span style="color:#e6db74">&#34;a&#34;</span>}, {<span style="color:#f92672">&#34;out&#34;</span>: []}],
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">&#34;timestamp&#34;</span>: <span style="color:#e6db74">&#34;2021-03-30T23:12:01-07:00&#34;</span>
</span></span><span style="display:flex;"><span>}
</span></span></code></pre></div><h3 id="reading-job-results">Reading job results</h3>
<pre tabindex="0"><code>for row in G.readJob(job[&#34;id&#34;]):
   print(row)
</code></pre><h3 id="search-for-jobs">Search for jobs</h3>
<p>Find jobs that match the prefix of the current request (example should find job from G.query().V().hasLabel(&ldquo;Planet&rdquo;).out())</p>
     
     
       list
-      http://localhost:1313/grip/docs/commands/list/
+      https://bmeg.github.io/grip/docs/commands/list/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/commands/list/
+      https://bmeg.github.io/grip/docs/commands/list/
       <pre tabindex="0"><code>grip list
</code></pre><h1 id="graphs">graphs</h1>
<pre tabindex="0"><code>grip list graphs
</code></pre>
     
     
       MongoDB
-      http://localhost:1313/grip/docs/databases/mongo/
+      https://bmeg.github.io/grip/docs/databases/mongo/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/databases/mongo/
+      https://bmeg.github.io/grip/docs/databases/mongo/
       <h1 id="mongodb">MongoDB</h1>
<p>GRIP supports storing vertices and edges in <a href="https://www.mongodb.com/">MongoDB</a>.</p>
<p>Config:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-yaml" data-lang="yaml"><span style="display:flex;"><span><span style="color:#f92672">Default</span>: <span style="color:#ae81ff">mongo</span>
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span><span style="color:#f92672">Drivers</span>:
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">mongo</span>:
</span></span><span style="display:flex;"><span>    <span style="color:#f92672">MongoDB</span>:
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">URL</span>: <span style="color:#e6db74">&#34;mongodb://localhost:27000&#34;</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">DBName</span>: <span style="color:#e6db74">&#34;gripdb&#34;</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">Username</span>: <span style="color:#e6db74">&#34;&#34;</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">Password</span>: <span style="color:#e6db74">&#34;&#34;</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">UseCorePipeline</span>: <span style="color:#66d9ef">False</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">BatchSize</span>: <span style="color:#ae81ff">0</span>
</span></span></code></pre></div><p><code>UseCorePipeline</code> - Default is to use Mongo pipeline API to do graph traversals.
By enabling <code>UseCorePipeline</code>, GRIP will do the traversal logic itself, only using
Mongo for graph storage.</p>
<p><code>BatchSize</code> - For core engine operations, GRIP dispatches element lookups in
batches to minimize query overhead. If missing from config file (which defaults to 0)
the engine will default to 1000.</p>
     
     
       mongoload
-      http://localhost:1313/grip/docs/commands/mongoload/
+      https://bmeg.github.io/grip/docs/commands/mongoload/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/commands/mongoload/
+      https://bmeg.github.io/grip/docs/commands/mongoload/
       <pre tabindex="0"><code>grip mongoload
</code></pre>
     
     
       Operations
-      http://localhost:1313/grip/docs/queries/operations/
+      https://bmeg.github.io/grip/docs/queries/operations/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/queries/operations/
+      https://bmeg.github.io/grip/docs/queries/operations/
       <h1 id="start-a-traversal">Start a Traversal</h1>
<h2 id="vids">.V([ids])</h2>
<p>Start query from Vertex</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span>G<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>V()
</span></span></code></pre></div><p>Returns all vertices in graph</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span>G<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>V([<span style="color:#e6db74">&#34;vertex1&#34;</span>])
</span></span></code></pre></div><p>Returns:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-json" data-lang="json"><span style="display:flex;"><span>{<span style="color:#f92672">&#34;gid&#34;</span> : <span style="color:#e6db74">&#34;vertex1&#34;</span>, <span style="color:#f92672">&#34;label&#34;</span>:<span style="color:#e6db74">&#34;TestVertex&#34;</span>, <span style="color:#f92672">&#34;data&#34;</span>:{}}
</span></span></code></pre></div><h2 id="eids">.E([ids])</h2>
<p>Start query from Edge</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span>G<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>E()
</span></span></code></pre></div><p>Returns all edges in graph</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-python" data-lang="python"><span style="display:flex;"><span>G<span style="color:#f92672">.</span>query()<span style="color:#f92672">.</span>E([<span style="color:#e6db74">&#34;edge1&#34;</span>])
</span></span></code></pre></div><p>Returns:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-json" data-lang="json"><span style="display:flex;"><span>{<span style="color:#f92672">&#34;gid&#34;</span> : <span style="color:#e6db74">&#34;edge1&#34;</span>, <span style="color:#f92672">&#34;label&#34;</span>:<span style="color:#e6db74">&#34;TestEdge&#34;</span>, <span style="color:#f92672">&#34;from&#34;</span>: <span style="color:#e6db74">&#34;vertex1&#34;</span>, <span style="color:#f92672">&#34;to&#34;</span>: <span style="color:#e6db74">&#34;vertex2&#34;</span>, <span style="color:#f92672">&#34;data&#34;</span>:{}}
</span></span></code></pre></div><h1 id="traverse-the-graph">Traverse the graph</h1>
<h2 id="in_-inv">.in_(), inV()</h2>
<p>Following incoming edges. Optional argument is the edge label (or list of labels) that should be followed. If no argument is provided, all incoming edges.</p>
<h2 id="out-outv">.out(), .outV()</h2>
<p>Following outgoing edges. Optional argument is the edge label (or list of labels) that should be followed. If no argument is provided, all outgoing edges.</p>
     
     
       Overview
-      http://localhost:1313/grip/docs/
+      https://bmeg.github.io/grip/docs/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/
-      <h1 id="overview">Overview</h1>
<p>GRIP stands for GRaph Integration Platform. It provides a graph interface on top of a variety of existing database technologies including:
MongoDB, PostgreSQL, MySQL, MariaDB, Badger, and LevelDB.</p>
<p>Properties of an GRIP graph:</p>
<ul>
<li>Both vertices and edges in a graph can have any number of properties associated with them.</li>
<li>There are many types of vertices and edges in a graph. Two vertices may have many types of edges
connecting them, thus reflecting a myriad of relationship types.</li>
<li>Edges in the graph are directed, meaning they have a source and destination.</li>
</ul>
<p>GRIP also provides a query API for the traversing, analyzing and manipulating your graphs. Its syntax is inspired by
<a href="http://tinkerpop.apache.org/">Apache TinkerPop</a>. Learn more <a href="http://localhost:1313/grip/docs/queries/getting_started">here</a> about GRIP and its
application for querying the Bio Medical Evidence Graph (<a href="https://bmeg.io">BMEG</a>).</p>
+      https://bmeg.github.io/grip/docs/
+      <h1 id="overview">Overview</h1>
<p>GRIP stands for GRaph Integration Platform. It provides a graph interface on top of a variety of existing database technologies including:
MongoDB, PostgreSQL, MySQL, MariaDB, Badger, and LevelDB.</p>
<p>Properties of an GRIP graph:</p>
<ul>
<li>Both vertices and edges in a graph can have any number of properties associated with them.</li>
<li>There are many types of vertices and edges in a graph. Two vertices may have many types of edges
connecting them, thus reflecting a myriad of relationship types.</li>
<li>Edges in the graph are directed, meaning they have a source and destination.</li>
</ul>
<p>GRIP also provides a query API for the traversing, analyzing and manipulating your graphs. Its syntax is inspired by
<a href="http://tinkerpop.apache.org/">Apache TinkerPop</a>. Learn more <a href="https://bmeg.github.io/grip/docs/queries/getting_started">here</a> about GRIP and its
application for querying the Bio Medical Evidence Graph (<a href="https://bmeg.io">BMEG</a>).</p>
     
     
       PostgreSQL
-      http://localhost:1313/grip/docs/databases/psql/
+      https://bmeg.github.io/grip/docs/databases/psql/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/databases/psql/
+      https://bmeg.github.io/grip/docs/databases/psql/
       <h1 id="postgresql">PostgreSQL</h1>
<p>GRIP supports storing vertices and edges in <a href="https://www.postgresql.org/">PostgreSQL</a>.</p>
<p>Config:</p>
<div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-yaml" data-lang="yaml"><span style="display:flex;"><span><span style="color:#f92672">Default</span>: <span style="color:#ae81ff">psql</span>
</span></span><span style="display:flex;"><span>
</span></span><span style="display:flex;"><span><span style="color:#f92672">Drivers</span>:
</span></span><span style="display:flex;"><span>  <span style="color:#f92672">psql</span>:
</span></span><span style="display:flex;"><span>    <span style="color:#f92672">PSQL</span>:
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">Host</span>: <span style="color:#ae81ff">localhost</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">Port</span>: <span style="color:#ae81ff">15432</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">User</span>: <span style="color:#e6db74">&#34;&#34;</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">Password</span>: <span style="color:#e6db74">&#34;&#34;</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">DBName</span>: <span style="color:#e6db74">&#34;grip&#34;</span>
</span></span><span style="display:flex;"><span>      <span style="color:#f92672">SSLMode</span>: <span style="color:#ae81ff">disable</span>
</span></span></code></pre></div>
     
     
       query
-      http://localhost:1313/grip/docs/commands/query/
+      https://bmeg.github.io/grip/docs/commands/query/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/commands/query/
+      https://bmeg.github.io/grip/docs/commands/query/
       <pre tabindex="0"><code>grip query &lt;graph&gt; &lt;query&gt;
</code></pre><p>Run a query on a graph.</p>
     
     
       Query a Graph
-      http://localhost:1313/grip/docs/queries/
+      https://bmeg.github.io/grip/docs/queries/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/queries/
+      https://bmeg.github.io/grip/docs/queries/
       
     
     
       Referencing Fields
-      http://localhost:1313/grip/docs/queries/jsonpath/
+      https://bmeg.github.io/grip/docs/queries/jsonpath/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/queries/jsonpath/
+      https://bmeg.github.io/grip/docs/queries/jsonpath/
       <h1 id="referencing-vertexedge-properties">Referencing Vertex/Edge Properties</h1>
<p>Several operations (where, fields, render, etc.) reference properties of the vertices/edges during the traversal.
GRIP uses a variation on JSONPath syntax as described in <a href="http://goessner.net/articles/">http://goessner.net/articles/</a> to reference fields during traversals.</p>
<p>The following query:</p>
<pre tabindex="0"><code>O.query().V([&#34;ENSG00000012048&#34;]).as_(&#34;gene&#34;).out(&#34;variant&#34;)
</code></pre><p>Starts at vertex <code>ENSG00000012048</code> and marks as <code>gene</code>:</p>
<pre tabindex="0"><code>{
  &#34;gid&#34;: &#34;ENSG00000012048&#34;,
  &#34;label&#34;: &#34;gene&#34;,
  &#34;data&#34;: {
    &#34;symbol&#34;: {
      &#34;ensembl&#34;: &#34;ENSG00000012048&#34;,
      &#34;hgnc&#34;: 1100,
      &#34;entrez&#34;: 672,
      &#34;hugo&#34;: &#34;BRCA1&#34;
    }
    &#34;transcipts&#34;: [&#34;ENST00000471181.7&#34;, &#34;ENST00000357654.8&#34;, &#34;ENST00000493795.5&#34;]
  }
}
</code></pre><p>as &ldquo;gene&rdquo; and traverses the graph to:</p>
     
     
       Security
-      http://localhost:1313/grip/docs/security/
+      https://bmeg.github.io/grip/docs/security/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/security/
+      https://bmeg.github.io/grip/docs/security/
       
     
     
       server
-      http://localhost:1313/grip/docs/commands/server/
+      https://bmeg.github.io/grip/docs/commands/server/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/commands/server/
+      https://bmeg.github.io/grip/docs/commands/server/
       <pre tabindex="0"><code>grip server
</code></pre><p>The server command starts up a graph server and waits for incoming requests.</p>
<h2 id="default-configuration">Default Configuration</h2>
<p>If invoked with no arguments or config files, GRIP will start up in embedded mode,
using a Badger based graph driver.</p>
<h2 id="networking">Networking</h2>
<p>By default the GRIP server operates on 2 ports, <code>8201</code> is the HTTP based interface.
Port <code>8202</code> is a GRPC based interface. Python, R and Javascript clients are designed
to connect to the HTTP interface on <code>8201</code>. The <code>grip</code> command will often use
port <code>8202</code> in order to complete operations. For example if you call <code>grip list graphs</code>
it will contact port <code>8202</code>, rather then using the HTTP port. This means that if
you are working with a server that is behind a firewall, and only the HTTP port is
available, then the grip command line program will not be able to issue commands,
even if the server is visible to client libraries.</p>
     
     
       SQL
-      http://localhost:1313/grip/docs/databases/sql/
+      https://bmeg.github.io/grip/docs/databases/sql/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/databases/sql/
-      <h1 id="connect-to-an-existing-sql-database">Connect to an existing SQL database</h1>
<p>Note: This driver is being superseded by the <a href="http://localhost:1313/grip/docs/gripper/gripper/">GRIPPER engine</a></p>
<p>GRIP supports modeling an existing SQL database as a graph. GRIP has been tested against <a href="https://www.postgresql.org/">PostgreSQL</a>, but should  work with
<a href="https://www.mysql.com/">MySQL</a> (4.1+) and <a href="https://mariadb.org/">MariaDB</a>.</p>
<p>Since GRIP uses Go&rsquo;s <code>database/sql</code> package, we could (in thoery) support any SQL databases listed on:
<a href="https://github.com/golang/go/wiki/SQLDrivers">https://github.com/golang/go/wiki/SQLDrivers</a>. Open an <a href="https://github.com/bmeg/grip/issues/new">issue</a> if you
would like to request support for your favorite SQL database.</p>
<h2 id="configuration-notes">Configuration Notes</h2>
<ul>
<li>
<p><code>DataSourceName</code> is a driver-specific data source name, usually consisting of at least a database name and connection information. Here are links for
to documentation for this field for each supported driver:</p>
+      https://bmeg.github.io/grip/docs/databases/sql/
+      <h1 id="connect-to-an-existing-sql-database">Connect to an existing SQL database</h1>
<p>Note: This driver is being superseded by the <a href="https://bmeg.github.io/grip/docs/gripper/gripper/">GRIPPER engine</a></p>
<p>GRIP supports modeling an existing SQL database as a graph. GRIP has been tested against <a href="https://www.postgresql.org/">PostgreSQL</a>, but should  work with
<a href="https://www.mysql.com/">MySQL</a> (4.1+) and <a href="https://mariadb.org/">MariaDB</a>.</p>
<p>Since GRIP uses Go&rsquo;s <code>database/sql</code> package, we could (in thoery) support any SQL databases listed on:
<a href="https://github.com/golang/go/wiki/SQLDrivers">https://github.com/golang/go/wiki/SQLDrivers</a>. Open an <a href="https://github.com/bmeg/grip/issues/new">issue</a> if you
would like to request support for your favorite SQL database.</p>
<h2 id="configuration-notes">Configuration Notes</h2>
<ul>
<li>
<p><code>DataSourceName</code> is a driver-specific data source name, usually consisting of at least a database name and connection information. Here are links for
to documentation for this field for each supported driver:</p>
     
     
       TCGA RNA Expression
-      http://localhost:1313/grip/docs/tutorials/tcga-rna/
+      https://bmeg.github.io/grip/docs/tutorials/tcga-rna/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/tutorials/tcga-rna/
+      https://bmeg.github.io/grip/docs/tutorials/tcga-rna/
       <h3 id="explore-tcga-rna-expression-data">Explore TCGA RNA Expression Data</h3>
<p>Create the graph</p>
<pre tabindex="0"><code>grip create tcga-rna
</code></pre><p>Get the data</p>
<pre tabindex="0"><code>curl -O http://download.cbioportal.org/gbm_tcga_pub2013.tar.gz
tar xvzf gbm_tcga_pub2013.tar.gz
</code></pre><p>Load clinical data</p>
<pre tabindex="0"><code>./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_clinical.txt --row-label &#39;Donor&#39;
</code></pre><p>Load RNASeq data</p>
<pre tabindex="0"><code>./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_RNA_Seq_v2_expression_median.txt -t  --index-col 1 --row-label RNASeq --row-prefix &#34;RNA:&#34; --exclude RNA:Hugo_Symbol
</code></pre><p>Connect RNASeq data to Clinical data</p>
<pre tabindex="0"><code>./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_RNA_Seq_v2_expression_median.txt -t  --index-col 1 --no-vertex --edge &#39;RNA:{_gid}&#39; rna
</code></pre><p>Connect Clinical data to subtypes</p>
<pre tabindex="0"><code>./example/load_matrix.py tcga-rna gbm_tcga_pub2013/data_clinical.txt --no-vertex -e &#34;{EXPRESSION_SUBTYPE}&#34; subtype --dst-vertex &#34;{EXPRESSION_SUBTYPE}&#34; Subtype
</code></pre><p>Load Hugo Symbol to EntrezID translation table from RNA matrix annotations</p>
     
     
       Tutorials
-      http://localhost:1313/grip/docs/tutorials/
+      https://bmeg.github.io/grip/docs/tutorials/
       Mon, 01 Jan 0001 00:00:00 +0000
-      http://localhost:1313/grip/docs/tutorials/
+      https://bmeg.github.io/grip/docs/tutorials/
       
     
   
diff --git a/docs/sitemap.xml b/docs/sitemap.xml
index 550d14fa..8fefa22c 100644
--- a/docs/sitemap.xml
+++ b/docs/sitemap.xml
@@ -2,80 +2,80 @@
 
   
-    http://localhost:1313/grip/docs/tutorials/pathway-commons/
+    https://bmeg.github.io/grip/docs/tutorials/pathway-commons/
   
-    http://localhost:1313/grip/docs/tutorials/amazon/
+    https://bmeg.github.io/grip/docs/tutorials/amazon/
   
-    http://localhost:1313/grip/docs/security/basic/
+    https://bmeg.github.io/grip/docs/security/basic/
   
-    http://localhost:1313/grip/categories/
+    https://bmeg.github.io/grip/categories/
   
-    http://localhost:1313/grip/docs/databases/
+    https://bmeg.github.io/grip/docs/databases/
   
-    http://localhost:1313/grip/docs/developers/
+    https://bmeg.github.io/grip/docs/developers/
   
-    http://localhost:1313/grip/download/
+    https://bmeg.github.io/grip/download/
   
-    http://localhost:1313/grip/docs/commands/drop/
+    https://bmeg.github.io/grip/docs/commands/drop/
   
-    http://localhost:1313/grip/docs/databases/kvstore/
+    https://bmeg.github.io/grip/docs/databases/kvstore/
   
-    http://localhost:1313/grip/docs/commands/er/
+    https://bmeg.github.io/grip/docs/commands/er/
   
-    http://localhost:1313/grip/docs/gripper/proxy/
+    https://bmeg.github.io/grip/docs/gripper/proxy/
   
-    http://localhost:1313/grip/docs/queries/getting_started/
+    https://bmeg.github.io/grip/docs/queries/getting_started/
   
-    http://localhost:1313/grip/docs/gripper/graphmodel/
+    https://bmeg.github.io/grip/docs/gripper/graphmodel/
   
-    http://localhost:1313/grip/docs/graphql/graph_schemas/
+    https://bmeg.github.io/grip/docs/graphql/graph_schemas/
   
-    http://localhost:1313/grip/docs/graphql/
+    https://bmeg.github.io/grip/docs/graphql/
   
-    http://localhost:1313/grip/docs/graphql/graphql/
+    https://bmeg.github.io/grip/docs/graphql/graphql/
   
-    http://localhost:1313/grip/
+    https://bmeg.github.io/grip/
   
-    http://localhost:1313/grip/docs/commands/
+    https://bmeg.github.io/grip/docs/commands/
   
-    http://localhost:1313/grip/docs/gripper/
+    https://bmeg.github.io/grip/docs/gripper/
   
-    http://localhost:1313/grip/docs/databases/gripper/
+    https://bmeg.github.io/grip/docs/databases/gripper/
   
-    http://localhost:1313/grip/docs/gripper/gripper/
+    https://bmeg.github.io/grip/docs/gripper/gripper/
   
-    http://localhost:1313/grip/docs/queries/iterations/
+    https://bmeg.github.io/grip/docs/queries/iterations/
   
-    http://localhost:1313/grip/docs/queries/jobs_api/
+    https://bmeg.github.io/grip/docs/queries/jobs_api/
   
-    http://localhost:1313/grip/docs/commands/list/
+    https://bmeg.github.io/grip/docs/commands/list/
   
-    http://localhost:1313/grip/docs/databases/mongo/
+    https://bmeg.github.io/grip/docs/databases/mongo/
   
-    http://localhost:1313/grip/docs/commands/mongoload/
+    https://bmeg.github.io/grip/docs/commands/mongoload/
   
-    http://localhost:1313/grip/docs/queries/operations/
+    https://bmeg.github.io/grip/docs/queries/operations/
   
-    http://localhost:1313/grip/docs/
+    https://bmeg.github.io/grip/docs/
   
-    http://localhost:1313/grip/docs/databases/psql/
+    https://bmeg.github.io/grip/docs/databases/psql/
   
-    http://localhost:1313/grip/docs/commands/query/
+    https://bmeg.github.io/grip/docs/commands/query/
   
-    http://localhost:1313/grip/docs/queries/
+    https://bmeg.github.io/grip/docs/queries/
   
-    http://localhost:1313/grip/docs/queries/jsonpath/
+    https://bmeg.github.io/grip/docs/queries/jsonpath/
   
-    http://localhost:1313/grip/docs/security/
+    https://bmeg.github.io/grip/docs/security/
   
-    http://localhost:1313/grip/docs/commands/server/
+    https://bmeg.github.io/grip/docs/commands/server/
   
-    http://localhost:1313/grip/docs/databases/sql/
+    https://bmeg.github.io/grip/docs/databases/sql/
   
-    http://localhost:1313/grip/tags/
+    https://bmeg.github.io/grip/tags/
   
-    http://localhost:1313/grip/docs/tutorials/tcga-rna/
+    https://bmeg.github.io/grip/docs/tutorials/tcga-rna/
   
-    http://localhost:1313/grip/docs/tutorials/
+    https://bmeg.github.io/grip/docs/tutorials/
   
 
diff --git a/docs/tags/index.xml b/docs/tags/index.xml
index 14cbfb1d..87097426 100644
--- a/docs/tags/index.xml
+++ b/docs/tags/index.xml
@@ -2,10 +2,10 @@
 
   
     Tags on GRIP
-    http://localhost:1313/grip/tags/
+    https://bmeg.github.io/grip/tags/
     Recent content in Tags on GRIP
     Hugo
     en-us
-    
+    
   
 

From 9537849bbe02393403c53d7940899f60179ed0f8 Mon Sep 17 00:00:00 2001
From: matthewpeterkort 
Date: Wed, 4 Dec 2024 11:37:26 -0800
Subject: [PATCH 25/35] fix double slash in paths

---
 docs/docs/commands/drop/index.html            | 16 +++++++--------
 docs/docs/commands/er/index.html              | 16 +++++++--------
 docs/docs/commands/index.html                 | 16 +++++++--------
 docs/docs/commands/list/index.html            | 16 +++++++--------
 docs/docs/commands/mongoload/index.html       | 16 +++++++--------
 docs/docs/commands/query/index.html           | 16 +++++++--------
 docs/docs/commands/server/index.html          | 16 +++++++--------
 docs/docs/databases/gripper/index.html        | 16 +++++++--------
 docs/docs/databases/index.html                | 16 +++++++--------
 docs/docs/databases/kvstore/index.html        | 16 +++++++--------
 docs/docs/databases/mongo/index.html          | 16 +++++++--------
 docs/docs/databases/psql/index.html           | 16 +++++++--------
 docs/docs/databases/sql/index.html            | 16 +++++++--------
 docs/docs/developers/index.html               | 16 +++++++--------
 docs/docs/graphql/graph_schemas/index.html    | 16 +++++++--------
 docs/docs/graphql/graphql/index.html          | 16 +++++++--------
 docs/docs/graphql/index.html                  | 16 +++++++--------
 docs/docs/gripper/graphmodel/index.html       | 16 +++++++--------
 docs/docs/gripper/gripper/index.html          | 16 +++++++--------
 docs/docs/gripper/index.html                  | 16 +++++++--------
 docs/docs/gripper/proxy/index.html            | 16 +++++++--------
 docs/docs/index.html                          | 16 +++++++--------
 docs/docs/queries/getting_started/index.html  | 16 +++++++--------
 docs/docs/queries/index.html                  | 16 +++++++--------
 docs/docs/queries/iterations/index.html       | 16 +++++++--------
 docs/docs/queries/jobs_api/index.html         | 16 +++++++--------
 docs/docs/queries/jsonpath/index.html         | 16 +++++++--------
 docs/docs/queries/operations/index.html       | 16 +++++++--------
 docs/docs/security/basic/index.html           | 16 +++++++--------
 docs/docs/security/index.html                 | 16 +++++++--------
 docs/docs/tutorials/amazon/index.html         | 16 +++++++--------
 docs/docs/tutorials/index.html                | 16 +++++++--------
 .../docs/tutorials/pathway-commons/index.html | 16 +++++++--------
 docs/docs/tutorials/tcga-rna/index.html       | 16 +++++++--------
 docs/download/index.html                      | 16 +++++++--------
 docs/index.html                               | 20 +++++++++----------
 website/.hugo_build.lock                      |  0
 website/config.yaml                           |  2 +-
 website/layouts/index.html                    |  4 ++--
 website/layouts/partials/head.html            | 16 +++++++--------
 40 files changed, 301 insertions(+), 301 deletions(-)
 create mode 100644 website/.hugo_build.lock

diff --git a/docs/docs/commands/drop/index.html b/docs/docs/commands/drop/index.html
index ca6074bd..6f949ce1 100644
--- a/docs/docs/commands/drop/index.html
+++ b/docs/docs/commands/drop/index.html
@@ -12,18 +12,18 @@
   
 
   
-  
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+  
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diff --git a/docs/docs/commands/er/index.html b/docs/docs/commands/er/index.html
index a1f07b33..99fd7c2b 100644
--- a/docs/docs/commands/er/index.html
+++ b/docs/docs/commands/er/index.html
@@ -12,18 +12,18 @@
   
 
   
-  
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+  
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+  
   
 
 
@@ -35,8 +35,8 @@
         
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diff --git a/docs/docs/commands/index.html b/docs/docs/commands/index.html
index 3d8e4160..6adba192 100644
--- a/docs/docs/commands/index.html
+++ b/docs/docs/commands/index.html
@@ -12,18 +12,18 @@
   
 
   
-  
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+  
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@@ -35,8 +35,8 @@
         
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diff --git a/docs/docs/commands/list/index.html b/docs/docs/commands/list/index.html
index 349f2176..a1df2e7e 100644
--- a/docs/docs/commands/list/index.html
+++ b/docs/docs/commands/list/index.html
@@ -12,18 +12,18 @@
   
 
   
-  
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@@ -35,8 +35,8 @@
         
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diff --git a/docs/docs/commands/mongoload/index.html b/docs/docs/commands/mongoload/index.html
index 0573be43..a0b96032 100644
--- a/docs/docs/commands/mongoload/index.html
+++ b/docs/docs/commands/mongoload/index.html
@@ -12,18 +12,18 @@
   
 
   
-  
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@@ -35,8 +35,8 @@
         
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diff --git a/docs/docs/commands/query/index.html b/docs/docs/commands/query/index.html
index d36a033d..b8f62df7 100644
--- a/docs/docs/commands/query/index.html
+++ b/docs/docs/commands/query/index.html
@@ -12,18 +12,18 @@
   
 
   
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diff --git a/docs/docs/commands/server/index.html b/docs/docs/commands/server/index.html
index 607ab8aa..5d12a98f 100644
--- a/docs/docs/commands/server/index.html
+++ b/docs/docs/commands/server/index.html
@@ -12,18 +12,18 @@
   
 
   
-  
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diff --git a/docs/docs/databases/gripper/index.html b/docs/docs/databases/gripper/index.html
index 87404eda..b39fd7c9 100644
--- a/docs/docs/databases/gripper/index.html
+++ b/docs/docs/databases/gripper/index.html
@@ -12,18 +12,18 @@
   
 
   
-  
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@@ -35,8 +35,8 @@
         
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diff --git a/docs/docs/databases/index.html b/docs/docs/databases/index.html
index f89e5c77..19d99beb 100644
--- a/docs/docs/databases/index.html
+++ b/docs/docs/databases/index.html
@@ -12,18 +12,18 @@
   
 
   
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     @@ -51,10 +51,10 @@

    GRaph Integration Platform (GRIP)

    - Download - Documentation + Documentation
    diff --git a/website/.hugo_build.lock b/website/.hugo_build.lock new file mode 100644 index 00000000..e69de29b diff --git a/website/config.yaml b/website/config.yaml index 4b77f007..2f8f7616 100644 --- a/website/config.yaml +++ b/website/config.yaml @@ -1,4 +1,4 @@ -baseURL: https://bmeg.github.io/grip +baseURL: https://bmeg.github.io/grip/ canonifyURLs: true languageCode: en-us title: GRIP diff --git a/website/layouts/index.html b/website/layouts/index.html index eddb8151..d68101e2 100644 --- a/website/layouts/index.html +++ b/website/layouts/index.html @@ -3,10 +3,10 @@

    GRaph Integration Platform (GRIP)

    - Download - Documentation + Documentation
    diff --git a/website/layouts/partials/head.html b/website/layouts/partials/head.html index 0db56e5a..8ab9b152 100644 --- a/website/layouts/partials/head.html +++ b/website/layouts/partials/head.html @@ -14,18 +14,18 @@ {{ end }} - - - - - + + + + + - + @@ -37,8 +37,8 @@

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     From 3bb0fdebf1d1fd2b3634e81000a751ba6e5b440d Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Wed, 4 Dec 2024 11:38:18 -0800 Subject: [PATCH 26/35] remove extra file --- website/.hugo_build.lock | 0 1 file changed, 0 insertions(+), 0 deletions(-) delete mode 100644 website/.hugo_build.lock diff --git a/website/.hugo_build.lock b/website/.hugo_build.lock deleted file mode 100644 index e69de29b..00000000 From a1646b0dc02db6d8c0f5a93e49f05ef924bfbc2e Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Tue, 10 Dec 2024 09:24:20 -0800 Subject: [PATCH 27/35] Flesh out jsonschema to graphql schema command --- cmd/schema/main.go | 28 +++++---- go.mod | 16 ++--- go.sum | 38 ++++++------ schema/graph.go | 150 --------------------------------------------- schema/graphql.go | 38 ++++++++++++ 5 files changed, 82 insertions(+), 188 deletions(-) create mode 100644 schema/graphql.go diff --git a/cmd/schema/main.go b/cmd/schema/main.go index 352d1586..33896672 100644 --- a/cmd/schema/main.go +++ b/cmd/schema/main.go @@ -8,8 +8,8 @@ import ( "github.com/bmeg/grip/gripql" "github.com/bmeg/grip/log" "github.com/bmeg/grip/schema" - graphSchema "github.com/bmeg/grip/schema" "github.com/bmeg/grip/util/rpc" + "github.com/bmeg/jsonschemagraph/schconv" "github.com/spf13/cobra" ) @@ -18,6 +18,7 @@ var yaml = false var jsonFile string var yamlFile string var graphName string +var writeSchema bool = false var jsonSchemaFile string var yamlSchemaDir string var sampleCount uint32 = 50 @@ -44,16 +45,16 @@ var getCmd = &cobra.Command{ return err } - schema, err := conn.GetSchema(graph) + gripqlschema, err := conn.GetSchema(graph) if err != nil { return err } var txt string if yaml { - txt, err = graphSchema.GraphToYAMLString(schema) + txt, err = schema.GraphToYAMLString(gripqlschema) } else { - txt, err = graphSchema.GraphToJSONString(schema) + txt, err = schema.GraphToJSONString(gripqlschema) } if err != nil { return err @@ -80,7 +81,7 @@ var loadGqlSchemafromJsonSchema = &cobra.Command{ if jsonSchemaFile != "" && graphName != "" { log.Infof("Loading Json Schema file: %s", jsonSchemaFile) - graphs, err := schema.ParseJSONSchemaGraphsFile(jsonSchemaFile, graphName) + graphs, err := schconv.ParseGraphFile(jsonSchemaFile, "jsonSchema", graphName) if err != nil { return err } @@ -94,19 +95,21 @@ var loadGqlSchemafromJsonSchema = &cobra.Command{ } if yamlSchemaDir != "" && graphName != "" { log.Infof("Loading Yaml Schema dir: %s", yamlSchemaDir) - graphs, err := schema.ParseYAMLSchemaGraphsFiles(yamlSchemaDir, graphName) + graphs, err := schconv.ParseGraphFile(yamlSchemaDir, "yamlSchema", graphName) if err != nil { log.Info("HELLO ERROR HERE: ", err) return err } for _, g := range graphs { - err := conn.AddSchema(g) + + _ = schema.GripGraphqltoGraphql(g, writeSchema) + //fmt.Println(graphql_string) + err = conn.AddSchema(g) if err != nil { return err } log.Debug("Posted schema: %s", g.Graph) } - } return nil }, @@ -135,9 +138,9 @@ var postCmd = &cobra.Command{ if err != nil { return err } - graphs, err = graphSchema.ParseJSONGraphs(bytes) + graphs, err = schema.ParseJSONGraphs(bytes) } else { - graphs, err = graphSchema.ParseJSONGraphsFile(jsonFile) + graphs, err = schema.ParseJSONGraphsFile(jsonFile) } if err != nil { return err @@ -159,9 +162,9 @@ var postCmd = &cobra.Command{ if err != nil { return err } - graphs, err = graphSchema.ParseYAMLGraphs(bytes) + graphs, err = schema.ParseYAMLGraphs(bytes) } else { - graphs, err = graphSchema.ParseYAMLGraphsFile(yamlFile) + graphs, err = schema.ParseYAMLGraphsFile(yamlFile) } if err != nil { return err @@ -204,6 +207,7 @@ func init() { pflags.StringVar(&graphName, "graphName", "", "Name of schemaGraph") gqlflags := loadGqlSchemafromJsonSchema.Flags() + gqlflags.BoolVar(&writeSchema, "writeSchema", writeSchema, "Write graphql schema to disk") gqlflags.StringVar(&host, "host", host, "grip server url") gqlflags.StringVar(&jsonSchemaFile, "jsonSchema", "", "Json Schema") gqlflags.StringVar(&yamlSchemaDir, "yamlSchemaDir", "", "Name of YAML schemas dir") diff --git a/go.mod b/go.mod index cf980b0d..9cfd30f8 100644 --- a/go.mod +++ b/go.mod @@ -10,7 +10,7 @@ require ( github.com/antlr/antlr4/runtime/Go/antlr v1.4.10 github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92 - github.com/bmeg/jsonschemagraph v0.0.3-0.20241130225037-5545ec0ffd4b + github.com/bmeg/jsonschemagraph v0.0.3-0.20241210002603-05a78a1c9530 github.com/boltdb/bolt v1.3.1 github.com/casbin/casbin/v2 v2.97.0 github.com/cockroachdb/pebble v1.1.1 @@ -44,12 +44,12 @@ require ( github.com/stretchr/testify v1.9.0 github.com/syndtr/goleveldb v1.0.0 go.mongodb.org/mongo-driver v1.11.9 - golang.org/x/crypto v0.25.0 - golang.org/x/net v0.27.0 - golang.org/x/sync v0.7.0 + golang.org/x/crypto v0.27.0 + golang.org/x/net v0.29.0 + golang.org/x/sync v0.8.0 google.golang.org/genproto/googleapis/api v0.0.0-20240711142825-46eb208f015d google.golang.org/grpc v1.65.0 - google.golang.org/protobuf v1.34.2 + google.golang.org/protobuf v1.35.2 sigs.k8s.io/yaml v1.4.0 ) @@ -126,9 +126,9 @@ require ( github.com/xdg-go/stringprep v1.0.4 // indirect github.com/youmark/pkcs8 v0.0.0-20240424034433-3c2c7870ae76 // indirect golang.org/x/exp v0.0.0-20240707233637-46b078467d37 // indirect - golang.org/x/sys v0.22.0 // indirect - golang.org/x/term v0.22.0 // indirect - golang.org/x/text v0.16.0 // indirect + golang.org/x/sys v0.25.0 // indirect + golang.org/x/term v0.24.0 // indirect + golang.org/x/text v0.19.0 // indirect gonum.org/v1/gonum v0.8.2 // indirect google.golang.org/genproto/googleapis/rpc v0.0.0-20240711142825-46eb208f015d // indirect gopkg.in/sourcemap.v1 v1.0.5 // indirect diff --git a/go.sum b/go.sum index dba87e31..47882f89 100644 --- a/go.sum +++ b/go.sum @@ -35,12 +35,12 @@ github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad h1:ICgBexeLB7iv/IQz4 github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad/go.mod h1:ft96Irkp72C7ZrUWRenG7LrF0NKMxXdRvsypo5Njhm4= github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92 h1:Myx/j+WxfEg+P3nDaizR1hBpjKSLgvr4ydzgp1/1pAU= github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92/go.mod h1:6v27bSBKXyIDFqlKQbUSnHlekE1y6bDkgWCuVEaDPng= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241113190142-5e57a1561020 h1:7/dWlBDJdKYhtF31LO8zXcw/IcYsmp/MWpydk6PzuNA= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241113190142-5e57a1561020/go.mod h1:k04v50661tQFKgYl6drQxWGf9q0dBmKhd6lwIk1rcCw= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241130214835-4863185c5c72 h1:p8LS6V7vX/Hq+cJl8WvEQZjN2X+xjIXQTuQkstgfG6I= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241130214835-4863185c5c72/go.mod h1:k04v50661tQFKgYl6drQxWGf9q0dBmKhd6lwIk1rcCw= github.com/bmeg/jsonschemagraph v0.0.3-0.20241130225037-5545ec0ffd4b h1:k9j0qId2gRBwYhSdvqlBfQQDNIU4nohG4J9lu9crWE0= github.com/bmeg/jsonschemagraph v0.0.3-0.20241130225037-5545ec0ffd4b/go.mod h1:k04v50661tQFKgYl6drQxWGf9q0dBmKhd6lwIk1rcCw= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241209230926-fb19ad7b2e2a h1:DStPPpLlDhbFx4lRDhuQg0/SKah+DoJV48bHSuTZeIs= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241209230926-fb19ad7b2e2a/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241210002603-05a78a1c9530 h1:2TwiDqHDaL2Myb791dxjaE7qSVDmSXjOkEyIXlphR38= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241210002603-05a78a1c9530/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= github.com/boltdb/bolt v1.3.1 h1:JQmyP4ZBrce+ZQu0dY660FMfatumYDLun9hBCUVIkF4= github.com/boltdb/bolt v1.3.1/go.mod h1:clJnj/oiGkjum5o1McbSZDSLxVThjynRyGBgiAx27Ps= github.com/bufbuild/protocompile v0.4.0 h1:LbFKd2XowZvQ/kajzguUp2DC9UEIQhIq77fZZlaQsNA= @@ -338,6 +338,8 @@ github.com/rs/xid v1.5.0 h1:mKX4bl4iPYJtEIxp6CYiUuLQ/8DYMoz0PUdtGgMFRVc= github.com/rs/xid v1.5.0/go.mod h1:trrq9SKmegXys3aeAKXMUTdJsYXVwGY3RLcfgqegfbg= github.com/russross/blackfriday v1.5.2/go.mod h1:JO/DiYxRf+HjHt06OyowR9PTA263kcR/rfWxYHBV53g= github.com/russross/blackfriday/v2 v2.1.0/go.mod h1:+Rmxgy9KzJVeS9/2gXHxylqXiyQDYRxCVz55jmeOWTM= +github.com/santhosh-tekuri/jsonschema/v5 v5.3.1 h1:lZUw3E0/J3roVtGQ+SCrUrg3ON6NgVqpn3+iol9aGu4= +github.com/santhosh-tekuri/jsonschema/v5 v5.3.1/go.mod h1:uToXkOrWAZ6/Oc07xWQrPOhJotwFIyu2bBVN41fcDUY= github.com/sclevine/agouti v3.0.0+incompatible/go.mod h1:b4WX9W9L1sfQKXeJf1mUTLZKJ48R1S7H23Ji7oFO5Bw= github.com/segmentio/ksuid v1.0.4 h1:sBo2BdShXjmcugAMwjugoGUdUV0pcxY5mW4xKRn3v4c= github.com/segmentio/ksuid v1.0.4/go.mod h1:/XUiZBD3kVx5SmUOl55voK5yeAbBNNIed+2O73XgrPE= @@ -417,8 +419,8 @@ golang.org/x/crypto v0.0.0-20220622213112-05595931fe9d/go.mod h1:IxCIyHEi3zRg3s0 golang.org/x/crypto v0.6.0/go.mod h1:OFC/31mSvZgRz0V1QTNCzfAI1aIRzbiufJtkMIlEp58= golang.org/x/crypto v0.19.0/go.mod h1:Iy9bg/ha4yyC70EfRS8jz+B6ybOBKMaSxLj6P6oBDfU= golang.org/x/crypto v0.23.0/go.mod h1:CKFgDieR+mRhux2Lsu27y0fO304Db0wZe70UKqHu0v8= -golang.org/x/crypto v0.25.0 h1:ypSNr+bnYL2YhwoMt2zPxHFmbAN1KZs/njMG3hxUp30= -golang.org/x/crypto v0.25.0/go.mod h1:T+wALwcMOSE0kXgUAnPAHqTLW+XHgcELELW8VaDgm/M= +golang.org/x/crypto v0.27.0 h1:GXm2NjJrPaiv/h1tb2UH8QfgC/hOf/+z0p6PT8o1w7A= +golang.org/x/crypto v0.27.0/go.mod h1:1Xngt8kV6Dvbssa53Ziq6Eqn0HqbZi5Z6R0ZpwQzt70= golang.org/x/exp v0.0.0-20180321215751-8460e604b9de/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= golang.org/x/exp v0.0.0-20180807140117-3d87b88a115f/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= golang.org/x/exp v0.0.0-20190121172915-509febef88a4/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= @@ -453,8 +455,8 @@ golang.org/x/net v0.7.0/go.mod h1:2Tu9+aMcznHK/AK1HMvgo6xiTLG5rD5rZLDS+rp2Bjs= golang.org/x/net v0.10.0/go.mod h1:0qNGK6F8kojg2nk9dLZ2mShWaEBan6FAoqfSigmmuDg= golang.org/x/net v0.21.0/go.mod h1:bIjVDfnllIU7BJ2DNgfnXvpSvtn8VRwhlsaeUTyUS44= golang.org/x/net v0.25.0/go.mod h1:JkAGAh7GEvH74S6FOH42FLoXpXbE/aqXSrIQjXgsiwM= -golang.org/x/net v0.27.0 h1:5K3Njcw06/l2y9vpGCSdcxWOYHOUk3dVNGDXN+FvAys= -golang.org/x/net v0.27.0/go.mod h1:dDi0PyhWNoiUOrAS8uXv/vnScO4wnHQO4mj9fn/RytE= +golang.org/x/net v0.29.0 h1:5ORfpBpCs4HzDYoodCDBbwHzdR5UrLBZ3sOnUJmFoHo= +golang.org/x/net v0.29.0/go.mod h1:gLkgy8jTGERgjzMic6DS9+SP0ajcu6Xu3Orq/SpETg0= golang.org/x/oauth2 v0.0.0-20180821212333-d2e6202438be/go.mod h1:N/0e6XlmueqKjAGxoOufVs8QHGRruUQn6yWY3a++T0U= golang.org/x/sync v0.0.0-20180314180146-1d60e4601c6f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sync v0.0.0-20181108010431-42b317875d0f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= @@ -464,8 +466,8 @@ golang.org/x/sync v0.0.0-20201020160332-67f06af15bc9/go.mod h1:RxMgew5VJxzue5/jJ golang.org/x/sync v0.0.0-20210220032951-036812b2e83c/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sync v0.0.0-20220722155255-886fb9371eb4/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sync v0.1.0/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= -golang.org/x/sync v0.7.0 h1:YsImfSBoP9QPYL0xyKJPq0gcaJdG3rInoqxTWbfQu9M= -golang.org/x/sync v0.7.0/go.mod h1:Czt+wKu1gCyEFDUtn0jG5QVvpJ6rzVqr5aXyt9drQfk= +golang.org/x/sync v0.8.0 h1:3NFvSEYkUoMifnESzZl15y791HH1qU2xm6eCJU5ZPXQ= +golang.org/x/sync v0.8.0/go.mod h1:Czt+wKu1gCyEFDUtn0jG5QVvpJ6rzVqr5aXyt9drQfk= golang.org/x/sys v0.0.0-20180830151530-49385e6e1522/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY= golang.org/x/sys v0.0.0-20180909124046-d0be0721c37e/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY= golang.org/x/sys v0.0.0-20181205085412-a5c9d58dba9a/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY= @@ -499,16 +501,16 @@ golang.org/x/sys v0.6.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= golang.org/x/sys v0.8.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= golang.org/x/sys v0.17.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA= golang.org/x/sys v0.20.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA= -golang.org/x/sys v0.22.0 h1:RI27ohtqKCnwULzJLqkv897zojh5/DwS/ENaMzUOaWI= -golang.org/x/sys v0.22.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA= +golang.org/x/sys v0.25.0 h1:r+8e+loiHxRqhXVl6ML1nO3l1+oFoWbnlu2Ehimmi34= +golang.org/x/sys v0.25.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA= golang.org/x/term v0.0.0-20201126162022-7de9c90e9dd1/go.mod h1:bj7SfCRtBDWHUb9snDiAeCFNEtKQo2Wmx5Cou7ajbmo= golang.org/x/term v0.0.0-20210927222741-03fcf44c2211/go.mod h1:jbD1KX2456YbFQfuXm/mYQcufACuNUgVhRMnK/tPxf8= golang.org/x/term v0.5.0/go.mod h1:jMB1sMXY+tzblOD4FWmEbocvup2/aLOaQEp7JmGp78k= golang.org/x/term v0.8.0/go.mod h1:xPskH00ivmX89bAKVGSKKtLOWNx2+17Eiy94tnKShWo= golang.org/x/term v0.17.0/go.mod h1:lLRBjIVuehSbZlaOtGMbcMncT+aqLLLmKrsjNrUguwk= golang.org/x/term v0.20.0/go.mod h1:8UkIAJTvZgivsXaD6/pH6U9ecQzZ45awqEOzuCvwpFY= -golang.org/x/term v0.22.0 h1:BbsgPEJULsl2fV/AT3v15Mjva5yXKQDyKf+TbDz7QJk= -golang.org/x/term v0.22.0/go.mod h1:F3qCibpT5AMpCRfhfT53vVJwhLtIVHhB9XDjfFvnMI4= +golang.org/x/term v0.24.0 h1:Mh5cbb+Zk2hqqXNO7S1iTjEphVL+jb8ZWaqh/g+JWkM= +golang.org/x/term v0.24.0/go.mod h1:lOBK/LVxemqiMij05LGJ0tzNr8xlmwBRJ81PX6wVLH8= golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ= golang.org/x/text v0.3.2/go.mod h1:bEr9sfX3Q8Zfm5fL9x+3itogRgK3+ptLWKqgva+5dAk= golang.org/x/text v0.3.3/go.mod h1:5Zoc/QRtKVWzQhOtBMvqHzDpF6irO9z98xDceosuGiQ= @@ -519,8 +521,8 @@ golang.org/x/text v0.7.0/go.mod h1:mrYo+phRRbMaCq/xk9113O4dZlRixOauAjOtrjsXDZ8= golang.org/x/text v0.9.0/go.mod h1:e1OnstbJyHTd6l/uOt8jFFHp6TRDWZR/bV3emEE/zU8= golang.org/x/text v0.14.0/go.mod h1:18ZOQIKpY8NJVqYksKHtTdi31H5itFRjB5/qKTNYzSU= golang.org/x/text v0.15.0/go.mod h1:18ZOQIKpY8NJVqYksKHtTdi31H5itFRjB5/qKTNYzSU= -golang.org/x/text v0.16.0 h1:a94ExnEXNtEwYLGJSIUxnWoxoRz/ZcCsV63ROupILh4= -golang.org/x/text v0.16.0/go.mod h1:GhwF1Be+LQoKShO3cGOHzqOgRrGaYc9AvblQOmPVHnI= +golang.org/x/text v0.19.0 h1:kTxAhCbGbxhK0IwgSKiMO5awPoDQ0RpfiVYBfK860YM= +golang.org/x/text v0.19.0/go.mod h1:BuEKDfySbSR4drPmRPG/7iBdf8hvFMuRexcpahXilzY= golang.org/x/time v0.5.0 h1:o7cqy6amK/52YcAKIPlM3a+Fpj35zvRj2TP+e1xFSfk= golang.org/x/time v0.5.0/go.mod h1:3BpzKBy/shNhVucY/MWOyx10tF3SFh9QdLuxbVysPQM= golang.org/x/tools v0.0.0-20180525024113-a5b4c53f6e8b/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ= @@ -571,8 +573,8 @@ google.golang.org/protobuf v0.0.0-20200228230310-ab0ca4ff8a60/go.mod h1:cfTl7dwQ google.golang.org/protobuf v1.20.1-0.20200309200217-e05f789c0967/go.mod h1:A+miEFZTKqfCUM6K7xSMQL9OKL/b6hQv+e19PK+JZNE= google.golang.org/protobuf v1.21.0/go.mod h1:47Nbq4nVaFHyn7ilMalzfO3qCViNmqZ2kzikPIcrTAo= google.golang.org/protobuf v1.23.0/go.mod h1:EGpADcykh3NcUnDUJcl1+ZksZNG86OlYog2l/sGQquU= -google.golang.org/protobuf v1.34.2 h1:6xV6lTsCfpGD21XK49h7MhtcApnLqkfYgPcdHftf6hg= -google.golang.org/protobuf v1.34.2/go.mod h1:qYOHts0dSfpeUzUFpOMr/WGzszTmLH+DiWniOlNbLDw= +google.golang.org/protobuf v1.35.2 h1:8Ar7bF+apOIoThw1EdZl0p1oWvMqTHmpA2fRTyZO8io= +google.golang.org/protobuf v1.35.2/go.mod h1:9fA7Ob0pmnwhb644+1+CVWFRbNajQ6iRojtC/QF5bRE= gopkg.in/check.v1 v0.0.0-20161208181325-20d25e280405/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0= gopkg.in/check.v1 v1.0.0-20180628173108-788fd7840127/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0= gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0= diff --git a/schema/graph.go b/schema/graph.go index 1ecfccef..59a7db7e 100644 --- a/schema/graph.go +++ b/schema/graph.go @@ -6,152 +6,14 @@ import ( "io/ioutil" "os" "path/filepath" - "strings" "github.com/bmeg/grip/log" - "slices" - "github.com/bmeg/grip/gripql" - "github.com/bmeg/jsonschema/v5" - "github.com/bmeg/jsonschemagraph/compile" - "github.com/bmeg/jsonschemagraph/graph" "google.golang.org/protobuf/encoding/protojson" "sigs.k8s.io/yaml" ) -func ConvertToGripqlType(field string) string { - switch field { - case "string": - return gripql.FieldType_STRING.String() - case "integer": - return gripql.FieldType_NUMERIC.String() - case "number": - return gripql.FieldType_NUMERIC.String() - case "boolean": - return gripql.FieldType_BOOL.String() - default: - return gripql.FieldType_UNKNOWN.String() - } -} - -func ParseSchema(schema *jsonschema.Schema) any { - /* This function traverses through the compiled json schema constructing a simplified - schema that consists of only golang primitive types */ - - //log.Infof("ENTERING FLATTEN SCHEMA %#v\n", schema) - vertData := make(map[string]any) - if schema.Ref != nil && schema.Ref.Title != "" { - // Primitive extensions are currently not supported. - if slices.Contains([]string{"Reference", "Link", "FHIRPrimitiveExtension"}, schema.Ref.Title) { - return nil - } - return ParseSchema(schema.Ref) - } - if schema.Items2020 != nil { - if schema.Items2020.Ref != nil && - schema.Items2020.Ref.Title != "" && - slices.Contains([]string{"Reference", "Link", "Link Description Object", "FHIRPrimitiveExtension"}, schema.Items2020.Ref.Title) { - return nil - } - if schema.Types[0] == "array" { - return []any{ParseSchema(schema.Items2020)} - } - return ParseSchema(schema.Items2020) - } - - if len(schema.Properties) > 0 { - for key, property := range schema.Properties { - // Not going to support inifinite nested extensions even though FHIR does. - if key == "extension" || key == "modifierExtension" { - continue - } - if val := ParseSchema(property); val != nil { - vertData[key] = val - } - } - return vertData - } - if schema.AnyOf != nil { - return nil - /* fhir_comments not implemented - for _, val := range schema.AnyOf { - return ParseSchema(val) - }*/ - } - if schema.Types != nil { - return ConvertToGripqlType(schema.Types[0]) - } - return nil -} - -func ParseIntoGraphqlSchema(relpath string, graphName string) ([]*gripql.Graph, error) { - out, err := graph.Load(relpath) - if err != nil { - log.Info("AN ERROR HAS OCCURED: ", err) - return nil, err - } - graphSchema := map[string]any{ - "vertices": []map[string]any{}, - "edges": []map[string]any{}, - "graph": graphName, - } - edgeList := []map[string]any{} - for _, class := range out.Classes { - // Since reading from schema there should be no duplicate edges - if ext, ok := class.Extensions[compile.GraphExtensionTag]; ok { - for _, target := range ext.(compile.GraphExtension).Targets { - ToVertex := strings.Split(target.Rel, "_") - edgeList = append(edgeList, map[string]any{ - "gid": fmt.Sprintf("(%s)-%s->(%s)", class.Title, target.Rel, ToVertex[len(ToVertex)-1]), - "label": target.Rel, - "from": class.Title, - "to": ToVertex[len(ToVertex)-1], - // TODO: No data field supported - }) - } - } - vertexData := make(map[string]any) - for key, sch := range class.Properties { - if sch.Ref != nil && sch.Ref.Title != "" && slices.Contains([]string{"Reference", "Link", "FHIRPrimitiveExtension"}, sch.Ref.Title) { - continue - } - vertVal := ParseSchema(sch) - //log.Info("FLATTENED VALUES: ", flattened_values) - switch vertVal.(type) { - case string: - vertexData[key] = vertVal.(string) - case int: - vertexData[key] = vertVal.(int) - case map[string]any: - vertexData[key] = vertVal.(map[string]any) - case []any: - vertexData[key] = vertVal.([]any) - } - } - vertex := map[string]any{"data": vertexData, "label": "Vertex", "gid": class.Title} - graphSchema["vertices"] = append(graphSchema["vertices"].([]map[string]any), vertex) - graphSchema["edges"] = edgeList - - } - - expandedJSON, err := json.Marshal(graphSchema) - if err != nil { - log.Errorf("Failed to marshal expanded schema: %v", err) - } - /* - For Testing purposes - err = os.WriteFile("new_dicts.json", expandedJSON, 0644) - if err != nil { - log.Errorf("Failed to write to file: %v", err) - } - */ - - graphs := gripql.Graph{} - json.Unmarshal(expandedJSON, &graphs) - return []*gripql.Graph{&graphs}, nil -} - func ParseYAMLSchemaGraphs(source []byte, graphName string) ([]*gripql.Graph, error) { return nil, nil } @@ -281,10 +143,6 @@ func parseGraphFile(relpath string, format string, graphName string) ([]*gripql. graphs, err = ParseYAMLGraphs(source) case "json": graphs, err = ParseJSONGraphs(source) - case "jsonSchema": - graphs, err = ParseIntoGraphqlSchema(path, graphName) - case "yamlSchema": - graphs, err = ParseIntoGraphqlSchema(relpath, graphName) case "jSchema": file, err := os.Open(path) if err != nil { @@ -351,14 +209,6 @@ func ParseJSONGraphsFile(relpath string) ([]*gripql.Graph, error) { return parseGraphFile(relpath, "json", "") } -func ParseJSONSchemaGraphsFile(relpath string, graphName string) ([]*gripql.Graph, error) { - return parseGraphFile(relpath, "jsonSchema", graphName) -} - -func ParseYAMLSchemaGraphsFiles(relpath string, graphName string) ([]*gripql.Graph, error) { - return parseGraphFile(relpath, "jsonSchema", graphName) -} - func ParseJsonSchema(relpath string, graphName string) ([]*gripql.Graph, error) { return parseGraphFile(relpath, "jSchema", graphName) } diff --git a/schema/graphql.go b/schema/graphql.go new file mode 100644 index 00000000..77363403 --- /dev/null +++ b/schema/graphql.go @@ -0,0 +1,38 @@ +package schema + +import ( + "fmt" + "os" + "strings" + + "github.com/bmeg/grip/gripql" +) + +func GripGraphqltoGraphql(graph *gripql.Graph, writefile bool) string { + var schemaBuilder strings.Builder + for _, v := range graph.Vertices { + if strings.HasSuffix(v.Gid, "Type") { + for name, values := range v.Data.AsMap() { + schemaBuilder.WriteString(fmt.Sprintf("enum %s {\n", name)) + for _, value := range values.([]any) { + schemaBuilder.WriteString(fmt.Sprintf(" %s\n", value)) + } + schemaBuilder.WriteString("}\n\n") + } + } else { + schemaBuilder.WriteString(fmt.Sprintf("type %s {\n", v.Gid)) + for field, fieldType := range v.Data.AsMap() { + schemaBuilder.WriteString(fmt.Sprintf(" %s: %s\n", field, fieldType)) + } + schemaBuilder.WriteString("}\n") + } + } + if writefile { + fileName := "schema.graphql" + err := os.WriteFile(fileName, []byte(schemaBuilder.String()), 0644) + if err != nil { + fmt.Printf("Failed to write schema to file: %v\n", err) + } + } + return schemaBuilder.String() +} From 146c50ef49cc4ac905169b4185b50414338b00ed Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Tue, 10 Dec 2024 16:05:10 -0800 Subject: [PATCH 28/35] fixup graphql schema generation --- go.mod | 2 +- go.sum | 14 ++++++++++++++ schema/graphql.go | 49 ++++++++++++++++++++++++++++++++++++++--------- 3 files changed, 55 insertions(+), 10 deletions(-) diff --git a/go.mod b/go.mod index 9cfd30f8..f2f8b9f1 100644 --- a/go.mod +++ b/go.mod @@ -10,7 +10,7 @@ require ( github.com/antlr/antlr4/runtime/Go/antlr v1.4.10 github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92 - github.com/bmeg/jsonschemagraph v0.0.3-0.20241210002603-05a78a1c9530 + github.com/bmeg/jsonschemagraph v0.0.3-0.20241211000114-7493b10aa2fe github.com/boltdb/bolt v1.3.1 github.com/casbin/casbin/v2 v2.97.0 github.com/cockroachdb/pebble v1.1.1 diff --git a/go.sum b/go.sum index 47882f89..2ec0ea08 100644 --- a/go.sum +++ b/go.sum @@ -41,6 +41,20 @@ github.com/bmeg/jsonschemagraph v0.0.3-0.20241209230926-fb19ad7b2e2a h1:DStPPpLl github.com/bmeg/jsonschemagraph v0.0.3-0.20241209230926-fb19ad7b2e2a/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= github.com/bmeg/jsonschemagraph v0.0.3-0.20241210002603-05a78a1c9530 h1:2TwiDqHDaL2Myb791dxjaE7qSVDmSXjOkEyIXlphR38= github.com/bmeg/jsonschemagraph v0.0.3-0.20241210002603-05a78a1c9530/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241210174749-d2daa11e3817 h1:B1cMiitclYSieW8KI+/ZQUyDS03IV8k4MJ+GdknDKX4= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241210174749-d2daa11e3817/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241210191325-71585cfb3524 h1:6aOb8PLGaJ+kOifiCCt6USDRt7WKWDDD43hsIBrOnJc= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241210191325-71585cfb3524/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241210212543-70f212509f5d h1:DDRf+MFZv/vdwHhfOnLDFR/3dIEWcPobb7+w9A+m97I= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241210212543-70f212509f5d/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241210220235-ad08cccc9c18 h1:q5za50YXfqxXdChJL3IgdqsJY7d1zXYuK1kNmraTPi4= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241210220235-ad08cccc9c18/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241210221630-a93c8860b606 h1:Oe+89mmgQSD1D5yi4dOXZwloLsV84RU68ueAGtr2n2w= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241210221630-a93c8860b606/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241210221941-3e919ec517cc h1:L2KBzHO3R370dB9mdyPSQJU67/VC/Vz5+L4Z8w3C5rw= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241210221941-3e919ec517cc/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241211000114-7493b10aa2fe h1:emW8sMq9MWg5aisapvXtA12MBthjnGdJ6nGnm12eoDo= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241211000114-7493b10aa2fe/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= github.com/boltdb/bolt v1.3.1 h1:JQmyP4ZBrce+ZQu0dY660FMfatumYDLun9hBCUVIkF4= github.com/boltdb/bolt v1.3.1/go.mod h1:clJnj/oiGkjum5o1McbSZDSLxVThjynRyGBgiAx27Ps= github.com/bufbuild/protocompile v0.4.0 h1:LbFKd2XowZvQ/kajzguUp2DC9UEIQhIq77fZZlaQsNA= diff --git a/schema/graphql.go b/schema/graphql.go index 77363403..f1f8803d 100644 --- a/schema/graphql.go +++ b/schema/graphql.go @@ -4,27 +4,58 @@ import ( "fmt" "os" "strings" + "unicode" "github.com/bmeg/grip/gripql" ) +func IsUpper(s string) bool { + for _, r := range s { + if !unicode.IsUpper(r) && unicode.IsLetter(r) { + return false + } + } + return true +} + func GripGraphqltoGraphql(graph *gripql.Graph, writefile bool) string { var schemaBuilder strings.Builder + // Write gen3 style boiler plate to mirror thier args + schemaBuilder.WriteString("scalar JSON\n") + schemaBuilder.WriteString("enum Accessibility {\n all\n accessible\n unaccessible\n}\n") + schemaBuilder.WriteString("enum Format {\n json\n tsv\n csv\n}\n") + for _, v := range graph.Vertices { - if strings.HasSuffix(v.Gid, "Type") { + if v.Gid != "Query" { + executedFirstBlock := false for name, values := range v.Data.AsMap() { - schemaBuilder.WriteString(fmt.Sprintf("enum %s {\n", name)) - for _, value := range values.([]any) { - schemaBuilder.WriteString(fmt.Sprintf(" %s\n", value)) + listVals, ok := values.([]any) + if ok && IsUpper(listVals[0].(string)) { + executedFirstBlock = true + schemaBuilder.WriteString(fmt.Sprintf("enum %s {\n", name)) + for _, value := range listVals { + schemaBuilder.WriteString(fmt.Sprintf(" %s\n", value)) + } + schemaBuilder.WriteString("}\n") + } else { + break } - schemaBuilder.WriteString("}\n\n") + } + if !executedFirstBlock { + schemaBuilder.WriteString(fmt.Sprintf("type %s {\n", v.Gid)) + for field, fieldType := range v.Data.AsMap() { + schemaBuilder.WriteString(fmt.Sprintf(" %s: %s\n", field, fieldType)) + } + schemaBuilder.WriteString("}\n") } } else { - schemaBuilder.WriteString(fmt.Sprintf("type %s {\n", v.Gid)) - for field, fieldType := range v.Data.AsMap() { - schemaBuilder.WriteString(fmt.Sprintf(" %s: %s\n", field, fieldType)) + for name, values := range v.Data.AsMap() { + schemaBuilder.WriteString(fmt.Sprintf("type %s {\n", name)) + for _, value := range values.([]any) { + schemaBuilder.WriteString(fmt.Sprintf(" %s\n", value)) + } + schemaBuilder.WriteString("}\n") } - schemaBuilder.WriteString("}\n") } } if writefile { From b772edec00b90b31948c126772a83ae4e0f41994 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Wed, 11 Dec 2024 15:50:35 -0800 Subject: [PATCH 29/35] fix up cmd args to work with jsonschemagraph changes --- cmd/schema/main.go | 25 +++++++++++++++++++++++-- go.mod | 2 +- go.sum | 2 ++ 3 files changed, 26 insertions(+), 3 deletions(-) diff --git a/cmd/schema/main.go b/cmd/schema/main.go index 33896672..1a8b6596 100644 --- a/cmd/schema/main.go +++ b/cmd/schema/main.go @@ -11,6 +11,7 @@ import ( "github.com/bmeg/grip/util/rpc" "github.com/bmeg/jsonschemagraph/schconv" "github.com/spf13/cobra" + goyaml "gopkg.in/yaml.v3" ) var host = "localhost:8202" @@ -21,6 +22,7 @@ var graphName string var writeSchema bool = false var jsonSchemaFile string var yamlSchemaDir string +var configPath string var sampleCount uint32 = 50 var excludeLabels []string @@ -64,6 +66,10 @@ var getCmd = &cobra.Command{ }, } +type Config struct { + DependencyOrder []string `yaml:"dependency_order"` +} + var loadGqlSchemafromJsonSchema = &cobra.Command{ Use: "graphql", Short: "Load graph schemas", @@ -79,9 +85,23 @@ var loadGqlSchemafromJsonSchema = &cobra.Command{ return err } + config := Config{DependencyOrder: []string{}} + if configPath != "" { + data, err := ioutil.ReadFile(configPath) + if err != nil { + log.Errorf("Failed to read YAML file: %v", err) + } + err = goyaml.Unmarshal(data, &config) + if err != nil { + log.Errorf("Failed to parse YAML file: %v", err) + } + } else { + fmt.Printf("Warning: No config file was provided, all vertices will be rendered has queries") + } + if jsonSchemaFile != "" && graphName != "" { log.Infof("Loading Json Schema file: %s", jsonSchemaFile) - graphs, err := schconv.ParseGraphFile(jsonSchemaFile, "jsonSchema", graphName) + graphs, err := schconv.ParseGraphFile(jsonSchemaFile, "jsonSchema", graphName, config.DependencyOrder, false) if err != nil { return err } @@ -95,7 +115,7 @@ var loadGqlSchemafromJsonSchema = &cobra.Command{ } if yamlSchemaDir != "" && graphName != "" { log.Infof("Loading Yaml Schema dir: %s", yamlSchemaDir) - graphs, err := schconv.ParseGraphFile(yamlSchemaDir, "yamlSchema", graphName) + graphs, err := schconv.ParseGraphFile(yamlSchemaDir, "yamlSchema", graphName, config.DependencyOrder, false) if err != nil { log.Info("HELLO ERROR HERE: ", err) return err @@ -212,6 +232,7 @@ func init() { gqlflags.StringVar(&jsonSchemaFile, "jsonSchema", "", "Json Schema") gqlflags.StringVar(&yamlSchemaDir, "yamlSchemaDir", "", "Name of YAML schemas dir") gqlflags.StringVar(&graphName, "graphName", "", "Name of schemaGraph") + gqlflags.StringVar(&configPath, "configPath", "", "Path of Config file for determining the subset of ") Cmd.AddCommand(loadGqlSchemafromJsonSchema) Cmd.AddCommand(getCmd) diff --git a/go.mod b/go.mod index f2f8b9f1..2257011f 100644 --- a/go.mod +++ b/go.mod @@ -10,7 +10,6 @@ require ( github.com/antlr/antlr4/runtime/Go/antlr v1.4.10 github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92 - github.com/bmeg/jsonschemagraph v0.0.3-0.20241211000114-7493b10aa2fe github.com/boltdb/bolt v1.3.1 github.com/casbin/casbin/v2 v2.97.0 github.com/cockroachdb/pebble v1.1.1 @@ -59,6 +58,7 @@ require ( github.com/alevinval/sse v1.0.2 // indirect github.com/beorn7/perks v1.0.1 // indirect github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc // indirect + github.com/bmeg/jsonschemagraph v0.0.3-0.20241211234837-ff91c296d0a8 // indirect github.com/casbin/govaluate v1.2.0 // indirect github.com/cespare/xxhash v1.1.0 // indirect github.com/cespare/xxhash/v2 v2.3.0 // indirect diff --git a/go.sum b/go.sum index 2ec0ea08..dd7e7018 100644 --- a/go.sum +++ b/go.sum @@ -55,6 +55,8 @@ github.com/bmeg/jsonschemagraph v0.0.3-0.20241210221941-3e919ec517cc h1:L2KBzHO3 github.com/bmeg/jsonschemagraph v0.0.3-0.20241210221941-3e919ec517cc/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= github.com/bmeg/jsonschemagraph v0.0.3-0.20241211000114-7493b10aa2fe h1:emW8sMq9MWg5aisapvXtA12MBthjnGdJ6nGnm12eoDo= github.com/bmeg/jsonschemagraph v0.0.3-0.20241211000114-7493b10aa2fe/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241211234837-ff91c296d0a8 h1:tBnMKyTnGckEt9uM8NUaiaSi6eFRhdJncWsgfez2kQg= +github.com/bmeg/jsonschemagraph v0.0.3-0.20241211234837-ff91c296d0a8/go.mod h1:wRzh5mRmHUv0zaqHCjFzHk+JivZRoxhuIAJyEjzq5hw= github.com/boltdb/bolt v1.3.1 h1:JQmyP4ZBrce+ZQu0dY660FMfatumYDLun9hBCUVIkF4= github.com/boltdb/bolt v1.3.1/go.mod h1:clJnj/oiGkjum5o1McbSZDSLxVThjynRyGBgiAx27Ps= github.com/bufbuild/protocompile v0.4.0 h1:LbFKd2XowZvQ/kajzguUp2DC9UEIQhIq77fZZlaQsNA= From 1eed29a9d6e47bb0a828d90402e31600fba9ad9f Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Thu, 12 Dec 2024 15:59:18 -0800 Subject: [PATCH 30/35] Make go.mod versions compatible with grip plugin versions and move graphql conversion scripts into jsonschemagraph package --- cmd/schema/main.go | 83 ---------------------------------------------- go.mod | 18 +++++----- go.sum | 46 +++++++------------------ schema/graphql.go | 69 -------------------------------------- 4 files changed, 21 insertions(+), 195 deletions(-) delete mode 100644 schema/graphql.go diff --git a/cmd/schema/main.go b/cmd/schema/main.go index 1a8b6596..35ff30ba 100644 --- a/cmd/schema/main.go +++ b/cmd/schema/main.go @@ -9,9 +9,7 @@ import ( "github.com/bmeg/grip/log" "github.com/bmeg/grip/schema" "github.com/bmeg/grip/util/rpc" - "github.com/bmeg/jsonschemagraph/schconv" "github.com/spf13/cobra" - goyaml "gopkg.in/yaml.v3" ) var host = "localhost:8202" @@ -19,14 +17,7 @@ var yaml = false var jsonFile string var yamlFile string var graphName string -var writeSchema bool = false var jsonSchemaFile string -var yamlSchemaDir string -var configPath string -var sampleCount uint32 = 50 -var excludeLabels []string - -var manual bool // Cmd line declaration var Cmd = &cobra.Command{ @@ -70,71 +61,6 @@ type Config struct { DependencyOrder []string `yaml:"dependency_order"` } -var loadGqlSchemafromJsonSchema = &cobra.Command{ - Use: "graphql", - Short: "Load graph schemas", - Long: ``, - Args: cobra.NoArgs, - RunE: func(cmd *cobra.Command, args []string) error { - if jsonSchemaFile == "" && yamlSchemaDir == "" { - return fmt.Errorf("no schema file was provided") - } - - conn, err := gripql.Connect(rpc.ConfigWithDefaults(host), true) - if err != nil { - return err - } - - config := Config{DependencyOrder: []string{}} - if configPath != "" { - data, err := ioutil.ReadFile(configPath) - if err != nil { - log.Errorf("Failed to read YAML file: %v", err) - } - err = goyaml.Unmarshal(data, &config) - if err != nil { - log.Errorf("Failed to parse YAML file: %v", err) - } - } else { - fmt.Printf("Warning: No config file was provided, all vertices will be rendered has queries") - } - - if jsonSchemaFile != "" && graphName != "" { - log.Infof("Loading Json Schema file: %s", jsonSchemaFile) - graphs, err := schconv.ParseGraphFile(jsonSchemaFile, "jsonSchema", graphName, config.DependencyOrder, false) - if err != nil { - return err - } - for _, g := range graphs { - err := conn.AddSchema(g) - if err != nil { - return err - } - log.Debug("Posted schema: %s", g.Graph) - } - } - if yamlSchemaDir != "" && graphName != "" { - log.Infof("Loading Yaml Schema dir: %s", yamlSchemaDir) - graphs, err := schconv.ParseGraphFile(yamlSchemaDir, "yamlSchema", graphName, config.DependencyOrder, false) - if err != nil { - log.Info("HELLO ERROR HERE: ", err) - return err - } - for _, g := range graphs { - - _ = schema.GripGraphqltoGraphql(g, writeSchema) - //fmt.Println(graphql_string) - err = conn.AddSchema(g) - if err != nil { - return err - } - log.Debug("Posted schema: %s", g.Graph) - } - } - return nil - }, -} - var postCmd = &cobra.Command{ Use: "post", Short: "Post jsonschema graph schemas", @@ -226,15 +152,6 @@ func init() { pflags.StringVar(&jsonSchemaFile, "jsonSchema", "", "Json Schema") pflags.StringVar(&graphName, "graphName", "", "Name of schemaGraph") - gqlflags := loadGqlSchemafromJsonSchema.Flags() - gqlflags.BoolVar(&writeSchema, "writeSchema", writeSchema, "Write graphql schema to disk") - gqlflags.StringVar(&host, "host", host, "grip server url") - gqlflags.StringVar(&jsonSchemaFile, "jsonSchema", "", "Json Schema") - gqlflags.StringVar(&yamlSchemaDir, "yamlSchemaDir", "", "Name of YAML schemas dir") - gqlflags.StringVar(&graphName, "graphName", "", "Name of schemaGraph") - gqlflags.StringVar(&configPath, "configPath", "", "Path of Config file for determining the subset of ") - - Cmd.AddCommand(loadGqlSchemafromJsonSchema) Cmd.AddCommand(getCmd) Cmd.AddCommand(postCmd) } diff --git a/go.mod b/go.mod index 2257011f..626df45d 100644 --- a/go.mod +++ b/go.mod @@ -10,6 +10,7 @@ require ( github.com/antlr/antlr4/runtime/Go/antlr v1.4.10 github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92 + github.com/bmeg/jsonschemagraph v0.0.3-0.20241211234837-ff91c296d0a8 github.com/boltdb/bolt v1.3.1 github.com/casbin/casbin/v2 v2.97.0 github.com/cockroachdb/pebble v1.1.1 @@ -43,12 +44,13 @@ require ( github.com/stretchr/testify v1.9.0 github.com/syndtr/goleveldb v1.0.0 go.mongodb.org/mongo-driver v1.11.9 - golang.org/x/crypto v0.27.0 - golang.org/x/net v0.29.0 - golang.org/x/sync v0.8.0 + golang.org/x/crypto v0.30.0 + golang.org/x/net v0.32.0 + golang.org/x/sync v0.10.0 google.golang.org/genproto/googleapis/api v0.0.0-20240711142825-46eb208f015d google.golang.org/grpc v1.65.0 google.golang.org/protobuf v1.35.2 + gopkg.in/yaml.v3 v3.0.1 sigs.k8s.io/yaml v1.4.0 ) @@ -57,8 +59,6 @@ require ( github.com/DataDog/zstd v1.5.5 // indirect github.com/alevinval/sse v1.0.2 // indirect github.com/beorn7/perks v1.0.1 // indirect - github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc // indirect - github.com/bmeg/jsonschemagraph v0.0.3-0.20241211234837-ff91c296d0a8 // indirect github.com/casbin/govaluate v1.2.0 // indirect github.com/cespare/xxhash v1.1.0 // indirect github.com/cespare/xxhash/v2 v2.3.0 // indirect @@ -120,18 +120,18 @@ require ( github.com/rcrowley/go-metrics v0.0.0-20201227073835-cf1acfcdf475 // indirect github.com/rogpeppe/go-internal v1.12.0 // indirect github.com/rs/xid v1.5.0 // indirect + github.com/santhosh-tekuri/jsonschema/v5 v5.3.1 // indirect github.com/spf13/pflag v1.0.5 // indirect github.com/xdg-go/pbkdf2 v1.0.0 // indirect github.com/xdg-go/scram v1.1.2 // indirect github.com/xdg-go/stringprep v1.0.4 // indirect github.com/youmark/pkcs8 v0.0.0-20240424034433-3c2c7870ae76 // indirect golang.org/x/exp v0.0.0-20240707233637-46b078467d37 // indirect - golang.org/x/sys v0.25.0 // indirect - golang.org/x/term v0.24.0 // indirect - golang.org/x/text v0.19.0 // indirect + golang.org/x/sys v0.28.0 // indirect + golang.org/x/term v0.27.0 // indirect + golang.org/x/text v0.21.0 // indirect gonum.org/v1/gonum v0.8.2 // indirect google.golang.org/genproto/googleapis/rpc v0.0.0-20240711142825-46eb208f015d // indirect gopkg.in/sourcemap.v1 v1.0.5 // indirect gopkg.in/yaml.v2 v2.4.0 // indirect - gopkg.in/yaml.v3 v3.0.1 // indirect ) diff --git a/go.sum b/go.sum index dd7e7018..0f58ab19 100644 --- a/go.sum +++ b/go.sum @@ -29,32 +29,10 @@ github.com/armon/consul-api v0.0.0-20180202201655-eb2c6b5be1b6/go.mod h1:grANhF5 github.com/benbjohnson/clock v1.1.0/go.mod h1:J11/hYXuz8f4ySSvYwY0FKfm+ezbsZBKZxNJlLklBHA= github.com/beorn7/perks v1.0.1 h1:VlbKKnNfV8bJzeqoa4cOKqO6bYr3WgKZxO8Z16+hsOM= github.com/beorn7/perks v1.0.1/go.mod h1:G2ZrVWU2WbWT9wwq4/hrbKbnv/1ERSJQ0ibhJ6rlkpw= -github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc h1:/0v/ZcXYjGs44InmjECrls31onIbVKVu1Q/E2cmnCEU= -github.com/bmeg/golib v0.0.0-20200725232156-e799a31439fc/go.mod h1:hoSeuZtqe58ANXHuWpeODx4bDHGV36QXlCs1yrUvK6M= github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad h1:ICgBexeLB7iv/IQz4rsP+MimOXFZUwWSPojEypuOaQ8= github.com/bmeg/jsonpath v0.0.0-20210207014051-cca5355553ad/go.mod h1:ft96Irkp72C7ZrUWRenG7LrF0NKMxXdRvsypo5Njhm4= github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92 h1:Myx/j+WxfEg+P3nDaizR1hBpjKSLgvr4ydzgp1/1pAU= github.com/bmeg/jsonschema/v5 v5.3.4-0.20241111204732-55db82022a92/go.mod h1:6v27bSBKXyIDFqlKQbUSnHlekE1y6bDkgWCuVEaDPng= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241130225037-5545ec0ffd4b h1:k9j0qId2gRBwYhSdvqlBfQQDNIU4nohG4J9lu9crWE0= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241130225037-5545ec0ffd4b/go.mod h1:k04v50661tQFKgYl6drQxWGf9q0dBmKhd6lwIk1rcCw= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241209230926-fb19ad7b2e2a h1:DStPPpLlDhbFx4lRDhuQg0/SKah+DoJV48bHSuTZeIs= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241209230926-fb19ad7b2e2a/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241210002603-05a78a1c9530 h1:2TwiDqHDaL2Myb791dxjaE7qSVDmSXjOkEyIXlphR38= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241210002603-05a78a1c9530/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241210174749-d2daa11e3817 h1:B1cMiitclYSieW8KI+/ZQUyDS03IV8k4MJ+GdknDKX4= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241210174749-d2daa11e3817/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241210191325-71585cfb3524 h1:6aOb8PLGaJ+kOifiCCt6USDRt7WKWDDD43hsIBrOnJc= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241210191325-71585cfb3524/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241210212543-70f212509f5d h1:DDRf+MFZv/vdwHhfOnLDFR/3dIEWcPobb7+w9A+m97I= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241210212543-70f212509f5d/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241210220235-ad08cccc9c18 h1:q5za50YXfqxXdChJL3IgdqsJY7d1zXYuK1kNmraTPi4= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241210220235-ad08cccc9c18/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241210221630-a93c8860b606 h1:Oe+89mmgQSD1D5yi4dOXZwloLsV84RU68ueAGtr2n2w= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241210221630-a93c8860b606/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241210221941-3e919ec517cc h1:L2KBzHO3R370dB9mdyPSQJU67/VC/Vz5+L4Z8w3C5rw= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241210221941-3e919ec517cc/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241211000114-7493b10aa2fe h1:emW8sMq9MWg5aisapvXtA12MBthjnGdJ6nGnm12eoDo= -github.com/bmeg/jsonschemagraph v0.0.3-0.20241211000114-7493b10aa2fe/go.mod h1:uVS5AJySmP/VVuZF5Ux/tVyPWNi9IWP5ZRf3il70F7k= github.com/bmeg/jsonschemagraph v0.0.3-0.20241211234837-ff91c296d0a8 h1:tBnMKyTnGckEt9uM8NUaiaSi6eFRhdJncWsgfez2kQg= github.com/bmeg/jsonschemagraph v0.0.3-0.20241211234837-ff91c296d0a8/go.mod h1:wRzh5mRmHUv0zaqHCjFzHk+JivZRoxhuIAJyEjzq5hw= github.com/boltdb/bolt v1.3.1 h1:JQmyP4ZBrce+ZQu0dY660FMfatumYDLun9hBCUVIkF4= @@ -435,8 +413,8 @@ golang.org/x/crypto v0.0.0-20220622213112-05595931fe9d/go.mod h1:IxCIyHEi3zRg3s0 golang.org/x/crypto v0.6.0/go.mod h1:OFC/31mSvZgRz0V1QTNCzfAI1aIRzbiufJtkMIlEp58= golang.org/x/crypto v0.19.0/go.mod h1:Iy9bg/ha4yyC70EfRS8jz+B6ybOBKMaSxLj6P6oBDfU= golang.org/x/crypto v0.23.0/go.mod h1:CKFgDieR+mRhux2Lsu27y0fO304Db0wZe70UKqHu0v8= -golang.org/x/crypto v0.27.0 h1:GXm2NjJrPaiv/h1tb2UH8QfgC/hOf/+z0p6PT8o1w7A= -golang.org/x/crypto v0.27.0/go.mod h1:1Xngt8kV6Dvbssa53Ziq6Eqn0HqbZi5Z6R0ZpwQzt70= +golang.org/x/crypto v0.30.0 h1:RwoQn3GkWiMkzlX562cLB7OxWvjH1L8xutO2WoJcRoY= +golang.org/x/crypto v0.30.0/go.mod h1:kDsLvtWBEx7MV9tJOj9bnXsPbxwJQ6csT/x4KIN4Ssk= golang.org/x/exp v0.0.0-20180321215751-8460e604b9de/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= golang.org/x/exp v0.0.0-20180807140117-3d87b88a115f/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= golang.org/x/exp v0.0.0-20190121172915-509febef88a4/go.mod h1:CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA= @@ -471,8 +449,8 @@ golang.org/x/net v0.7.0/go.mod h1:2Tu9+aMcznHK/AK1HMvgo6xiTLG5rD5rZLDS+rp2Bjs= golang.org/x/net v0.10.0/go.mod h1:0qNGK6F8kojg2nk9dLZ2mShWaEBan6FAoqfSigmmuDg= golang.org/x/net v0.21.0/go.mod h1:bIjVDfnllIU7BJ2DNgfnXvpSvtn8VRwhlsaeUTyUS44= golang.org/x/net v0.25.0/go.mod h1:JkAGAh7GEvH74S6FOH42FLoXpXbE/aqXSrIQjXgsiwM= -golang.org/x/net v0.29.0 h1:5ORfpBpCs4HzDYoodCDBbwHzdR5UrLBZ3sOnUJmFoHo= -golang.org/x/net v0.29.0/go.mod h1:gLkgy8jTGERgjzMic6DS9+SP0ajcu6Xu3Orq/SpETg0= +golang.org/x/net v0.32.0 h1:ZqPmj8Kzc+Y6e0+skZsuACbx+wzMgo5MQsJh9Qd6aYI= +golang.org/x/net v0.32.0/go.mod h1:CwU0IoeOlnQQWJ6ioyFrfRuomB8GKF6KbYXZVyeXNfs= golang.org/x/oauth2 v0.0.0-20180821212333-d2e6202438be/go.mod h1:N/0e6XlmueqKjAGxoOufVs8QHGRruUQn6yWY3a++T0U= golang.org/x/sync v0.0.0-20180314180146-1d60e4601c6f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sync v0.0.0-20181108010431-42b317875d0f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= @@ -482,8 +460,8 @@ golang.org/x/sync v0.0.0-20201020160332-67f06af15bc9/go.mod h1:RxMgew5VJxzue5/jJ golang.org/x/sync v0.0.0-20210220032951-036812b2e83c/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sync v0.0.0-20220722155255-886fb9371eb4/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sync v0.1.0/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= -golang.org/x/sync v0.8.0 h1:3NFvSEYkUoMifnESzZl15y791HH1qU2xm6eCJU5ZPXQ= -golang.org/x/sync v0.8.0/go.mod h1:Czt+wKu1gCyEFDUtn0jG5QVvpJ6rzVqr5aXyt9drQfk= +golang.org/x/sync v0.10.0 h1:3NQrjDixjgGwUOCaF8w2+VYHv0Ve/vGYSbdkTa98gmQ= +golang.org/x/sync v0.10.0/go.mod h1:Czt+wKu1gCyEFDUtn0jG5QVvpJ6rzVqr5aXyt9drQfk= golang.org/x/sys v0.0.0-20180830151530-49385e6e1522/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY= golang.org/x/sys v0.0.0-20180909124046-d0be0721c37e/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY= golang.org/x/sys v0.0.0-20181205085412-a5c9d58dba9a/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY= @@ -517,16 +495,16 @@ golang.org/x/sys v0.6.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= golang.org/x/sys v0.8.0/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg= golang.org/x/sys v0.17.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA= golang.org/x/sys v0.20.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA= -golang.org/x/sys v0.25.0 h1:r+8e+loiHxRqhXVl6ML1nO3l1+oFoWbnlu2Ehimmi34= -golang.org/x/sys v0.25.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA= +golang.org/x/sys v0.28.0 h1:Fksou7UEQUWlKvIdsqzJmUmCX3cZuD2+P3XyyzwMhlA= +golang.org/x/sys v0.28.0/go.mod h1:/VUhepiaJMQUp4+oa/7Zr1D23ma6VTLIYjOOTFZPUcA= golang.org/x/term v0.0.0-20201126162022-7de9c90e9dd1/go.mod h1:bj7SfCRtBDWHUb9snDiAeCFNEtKQo2Wmx5Cou7ajbmo= golang.org/x/term v0.0.0-20210927222741-03fcf44c2211/go.mod h1:jbD1KX2456YbFQfuXm/mYQcufACuNUgVhRMnK/tPxf8= golang.org/x/term v0.5.0/go.mod h1:jMB1sMXY+tzblOD4FWmEbocvup2/aLOaQEp7JmGp78k= golang.org/x/term v0.8.0/go.mod h1:xPskH00ivmX89bAKVGSKKtLOWNx2+17Eiy94tnKShWo= golang.org/x/term v0.17.0/go.mod h1:lLRBjIVuehSbZlaOtGMbcMncT+aqLLLmKrsjNrUguwk= golang.org/x/term v0.20.0/go.mod h1:8UkIAJTvZgivsXaD6/pH6U9ecQzZ45awqEOzuCvwpFY= -golang.org/x/term v0.24.0 h1:Mh5cbb+Zk2hqqXNO7S1iTjEphVL+jb8ZWaqh/g+JWkM= -golang.org/x/term v0.24.0/go.mod h1:lOBK/LVxemqiMij05LGJ0tzNr8xlmwBRJ81PX6wVLH8= +golang.org/x/term v0.27.0 h1:WP60Sv1nlK1T6SupCHbXzSaN0b9wUmsPoRS9b61A23Q= +golang.org/x/term v0.27.0/go.mod h1:iMsnZpn0cago0GOrHO2+Y7u7JPn5AylBrcoWkElMTSM= golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ= golang.org/x/text v0.3.2/go.mod h1:bEr9sfX3Q8Zfm5fL9x+3itogRgK3+ptLWKqgva+5dAk= golang.org/x/text v0.3.3/go.mod h1:5Zoc/QRtKVWzQhOtBMvqHzDpF6irO9z98xDceosuGiQ= @@ -537,8 +515,8 @@ golang.org/x/text v0.7.0/go.mod h1:mrYo+phRRbMaCq/xk9113O4dZlRixOauAjOtrjsXDZ8= golang.org/x/text v0.9.0/go.mod h1:e1OnstbJyHTd6l/uOt8jFFHp6TRDWZR/bV3emEE/zU8= golang.org/x/text v0.14.0/go.mod h1:18ZOQIKpY8NJVqYksKHtTdi31H5itFRjB5/qKTNYzSU= golang.org/x/text v0.15.0/go.mod h1:18ZOQIKpY8NJVqYksKHtTdi31H5itFRjB5/qKTNYzSU= -golang.org/x/text v0.19.0 h1:kTxAhCbGbxhK0IwgSKiMO5awPoDQ0RpfiVYBfK860YM= -golang.org/x/text v0.19.0/go.mod h1:BuEKDfySbSR4drPmRPG/7iBdf8hvFMuRexcpahXilzY= +golang.org/x/text v0.21.0 h1:zyQAAkrwaneQ066sspRyJaG9VNi/YJ1NfzcGB3hZ/qo= +golang.org/x/text v0.21.0/go.mod h1:4IBbMaMmOPCJ8SecivzSH54+73PCFmPWxNTLm+vZkEQ= golang.org/x/time v0.5.0 h1:o7cqy6amK/52YcAKIPlM3a+Fpj35zvRj2TP+e1xFSfk= golang.org/x/time v0.5.0/go.mod h1:3BpzKBy/shNhVucY/MWOyx10tF3SFh9QdLuxbVysPQM= golang.org/x/tools v0.0.0-20180525024113-a5b4c53f6e8b/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ= diff --git a/schema/graphql.go b/schema/graphql.go deleted file mode 100644 index f1f8803d..00000000 --- a/schema/graphql.go +++ /dev/null @@ -1,69 +0,0 @@ -package schema - -import ( - "fmt" - "os" - "strings" - "unicode" - - "github.com/bmeg/grip/gripql" -) - -func IsUpper(s string) bool { - for _, r := range s { - if !unicode.IsUpper(r) && unicode.IsLetter(r) { - return false - } - } - return true -} - -func GripGraphqltoGraphql(graph *gripql.Graph, writefile bool) string { - var schemaBuilder strings.Builder - // Write gen3 style boiler plate to mirror thier args - schemaBuilder.WriteString("scalar JSON\n") - schemaBuilder.WriteString("enum Accessibility {\n all\n accessible\n unaccessible\n}\n") - schemaBuilder.WriteString("enum Format {\n json\n tsv\n csv\n}\n") - - for _, v := range graph.Vertices { - if v.Gid != "Query" { - executedFirstBlock := false - for name, values := range v.Data.AsMap() { - listVals, ok := values.([]any) - if ok && IsUpper(listVals[0].(string)) { - executedFirstBlock = true - schemaBuilder.WriteString(fmt.Sprintf("enum %s {\n", name)) - for _, value := range listVals { - schemaBuilder.WriteString(fmt.Sprintf(" %s\n", value)) - } - schemaBuilder.WriteString("}\n") - } else { - break - } - } - if !executedFirstBlock { - schemaBuilder.WriteString(fmt.Sprintf("type %s {\n", v.Gid)) - for field, fieldType := range v.Data.AsMap() { - schemaBuilder.WriteString(fmt.Sprintf(" %s: %s\n", field, fieldType)) - } - schemaBuilder.WriteString("}\n") - } - } else { - for name, values := range v.Data.AsMap() { - schemaBuilder.WriteString(fmt.Sprintf("type %s {\n", name)) - for _, value := range values.([]any) { - schemaBuilder.WriteString(fmt.Sprintf(" %s\n", value)) - } - schemaBuilder.WriteString("}\n") - } - } - } - if writefile { - fileName := "schema.graphql" - err := os.WriteFile(fileName, []byte(schemaBuilder.String()), 0644) - if err != nil { - fmt.Printf("Failed to write schema to file: %v\n", err) - } - } - return schemaBuilder.String() -} From e938d1803e4b323f46a02fd98c4fe51ec8039d4d Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Thu, 2 Jan 2025 12:21:33 -0800 Subject: [PATCH 31/35] Add support for yaml schemas, change AddSchema to an upsert operation --- cmd/schema/main.go | 26 +++++- conformance/graphs/prompt.yaml | 29 ++++++ conformance/graphs/response.yaml | 30 ++++++ conformance/tests/ot_bulk_raw.py | 7 +- conformance/tests/ot_bulk_raw_yaml.py | 42 +++++++++ conformance/tests/ot_schema.py | 1 + schema/graph.go | 129 +++++++++++++++++++++++++- server/api.go | 31 ++++++- server/metagraphs.go | 10 +- 9 files changed, 286 insertions(+), 19 deletions(-) create mode 100644 conformance/graphs/prompt.yaml create mode 100644 conformance/graphs/response.yaml create mode 100644 conformance/tests/ot_bulk_raw_yaml.py diff --git a/cmd/schema/main.go b/cmd/schema/main.go index 35ff30ba..a24e6aa0 100644 --- a/cmd/schema/main.go +++ b/cmd/schema/main.go @@ -18,6 +18,7 @@ var jsonFile string var yamlFile string var graphName string var jsonSchemaFile string +var yamlSchemaPath string // Cmd line declaration var Cmd = &cobra.Command{ @@ -62,12 +63,13 @@ type Config struct { } var postCmd = &cobra.Command{ - Use: "post", + Use: "post [graph name]", Short: "Post jsonschema graph schemas", Long: ``, - Args: cobra.NoArgs, + Args: cobra.ExactArgs(1), RunE: func(cmd *cobra.Command, args []string) error { - if jsonFile == "" && yamlFile == "" && jsonSchemaFile == "" { + graphName := args[0] + if jsonFile == "" && yamlFile == "" && jsonSchemaFile == "" && yamlSchemaPath == "" { return fmt.Errorf("no schema file was provided") } @@ -122,7 +124,7 @@ var postCmd = &cobra.Command{ } } } - if jsonSchemaFile != "" && graphName != "" { + if jsonSchemaFile != "" { log.Infof("Loading Json Schema file: %s", jsonSchemaFile) graphs, err := schema.ParseJsonSchema(jsonSchemaFile, graphName) if err != nil { @@ -136,6 +138,20 @@ var postCmd = &cobra.Command{ log.Debug("Posted schema: %s", g.Graph) } } + if yamlSchemaPath != "" { + log.Infof("Loading Yaml Schema path: %s", yamlSchemaPath) + graphs, err := schema.ParseYamlSchemaPath(yamlSchemaPath, graphName) + if err != nil { + return err + } + for _, g := range graphs { + err := conn.AddSchema(g) + if err != nil { + return err + } + log.Debug("Posted schema: %s", g.Graph) + } + } return nil }, } @@ -150,7 +166,7 @@ func init() { pflags.StringVar(&jsonFile, "json", "", "JSON graph file") pflags.StringVar(&yamlFile, "yaml", "", "YAML graph file") pflags.StringVar(&jsonSchemaFile, "jsonSchema", "", "Json Schema") - pflags.StringVar(&graphName, "graphName", "", "Name of schemaGraph") + pflags.StringVar(&yamlSchemaPath, "yamlSchemaPath", "", "Name of the dir that contains YAML schemas") Cmd.AddCommand(getCmd) Cmd.AddCommand(postCmd) diff --git a/conformance/graphs/prompt.yaml b/conformance/graphs/prompt.yaml new file mode 100644 index 00000000..0f58c6f5 --- /dev/null +++ b/conformance/graphs/prompt.yaml @@ -0,0 +1,29 @@ +id: http://grip-schema.io/schema/0.0.1/Prompt +additionalProperties: false +description: User generated prompt +links: +- href: '{id}' + rel: responses + targetHints: + direction: + - outbound + multiplicity: + - has_many + regex_match: + - response:* + targetSchema: + $ref: http://grip-schema.io/schema/0.0.1/Response + templatePointers: + id: /response + +properties: + id: + type: string + text: + type: string + resourceType: + type: string + responses: + type: array + items: + type: string diff --git a/conformance/graphs/response.yaml b/conformance/graphs/response.yaml new file mode 100644 index 00000000..311ef2c5 --- /dev/null +++ b/conformance/graphs/response.yaml @@ -0,0 +1,30 @@ +id: http://grip-schema.io/schema/0.0.1/Response +additionalProperties: false +description: User LLM generated response +links: +- href: '{id}' + rel: prompt + targetHints: + direction: + - outbound + multiplicity: + - has_one + regex_match: + - prompt:* + targetSchema: + $ref: http://grip-schema.io/schema/0.0.1/Prompt + templatePointers: + id: /prompt + +properties: + id: + type: string + text: + type: string + resourceType: + type: string + prompt: + type: string + model: + type: string + diff --git a/conformance/tests/ot_bulk_raw.py b/conformance/tests/ot_bulk_raw.py index c50f0796..9bd05376 100644 --- a/conformance/tests/ot_bulk_raw.py +++ b/conformance/tests/ot_bulk_raw.py @@ -22,11 +22,11 @@ def test_bulk_add_raw(man): if len(err["errors"]) != 0: errors.append(f"Wrong number of errors {len(err['errors'])} != 0") - edge = G.getVertex("838e42fb-a65d-4039-9f83-59c37b1ae889") - if "auth_resource_path" not in edge["data"] or edge["data"]["auth_resource_path"] != "test-data": + vertex = G.getVertex("838e42fb-a65d-4039-9f83-59c37b1ae889") + if "auth_resource_path" not in vertex["data"] or vertex["data"]["auth_resource_path"] != "test-data": errors.append("ExtraArg auth_resource_path of value test-data not added to vertex") - if "gid" not in edge or edge["gid"] != "838e42fb-a65d-4039-9f83-59c37b1ae889": + if "gid" not in vertex or vertex["gid"] != "838e42fb-a65d-4039-9f83-59c37b1ae889": errors.append("bulkraw inserted edge with id 838e42fb-a65d-4039-9f83-59c37b1ae889 not found") labels = G.listLabels() @@ -58,7 +58,6 @@ def test_bulk_add_raw_validation_error(man): return errors - def test_bulk_add_raw_no_schema(man): errors = [] diff --git a/conformance/tests/ot_bulk_raw_yaml.py b/conformance/tests/ot_bulk_raw_yaml.py new file mode 100644 index 00000000..bc40a17b --- /dev/null +++ b/conformance/tests/ot_bulk_raw_yaml.py @@ -0,0 +1,42 @@ +import json +import yaml + +def test_post_yaml_schema(man): + errors = [] + G = man.writeTest() + + prompt = process_graph_schema("conformance/graphs/prompt.yaml") + response = process_graph_schema("conformance/graphs/response.yaml") + + G.addSchema(vertices=prompt) + G.addSchema(vertices=response) + + fetchedSchema = G.getSchema() + len_vertices = len(fetchedSchema['vertices']) + if len_vertices != 2: + errors.append(f"incorrect number of vertices in schema {len_vertices} != 2") + + bulkRaw = G.bulkAddRaw() + bulkRaw.addJson(data={"id": "prompt:0", "resourceType":"Prompt", "text": "Identify the drug-target interactions in the passage given below (along with the interaction type among the following: 'inhibitor', 'agonist', 'modulator', 'activator', 'blocker', 'inducer', 'antagonist', 'cleavage', 'disruption', 'intercalation', 'inactivator', 'bind', 'binder', 'partial agonist', 'cofactor', 'substrate', 'ligand', 'chelator', 'downregulator', 'other', 'antibody', 'other/unknown'):\n\nInhibition of rat brain monoamine oxidase activities by psoralen and isopsoralen: implications for the treatment of affective disorders. Psoralen and isopsoralen, furocoumarins isolated from the plant Psoralea corylifolia L., were demonstrated to exhibit in vitro inhibitory actions on monoamine oxidase (MAO) activities in rat brain mitochondria, preferentially inhibiting MAO-A activity over MAO-B activity. This inhibition of enzyme activities was found to be dose-dependent and reversible. For MAO-A, the IC50 values are 15.2 +/- 1.3 microM psoralen and 9.0 +/- 0.6 microM isopsoralen. For MAO-B, the IC50 values are 61.8 +/- 4.3 microM psoralen and 12.8 +/- 0.5 microM isopsoralen. Lineweaver-Burk transformation of the inhibition data indicates that inhibition by both psoralen and isopsoralen is non-competitive for MAO-A. The Ki values were calculated to be 14.0 microM for psoralen and 6.5 microM for isopsoralen. On the other hand, inhibition by both psoralen and isopsoralen is competitive for MAO-B. The Ki values were calculated to be 58.1 microM for psoralen and 10.8 microM for isopsoralen. These inhibitory actions of psoralen and isopsoralen on rat brain mitochondrial MAO activities are discussed in relation to their toxicities and their potential applications to treat affective disorders.\n", "responses": ["response:0"]}) + bulkRaw.addJson(data={"id": "prompt:1", "resourceType":"Prompt", "text": "Identify the drug-target interactions in the passage given below (along with the interaction type among the following: 'inhibitor', 'agonist', 'modulator', 'activator', 'blocker', 'inducer', 'antagonist', 'cleavage', 'disruption', 'intercalation', 'inactivator', 'bind', 'binder', 'partial agonist', 'cofactor', 'substrate', 'ligand', 'chelator', 'downregulator', 'other', 'antibody', 'other/unknown'):\n\nSelective inhibitor of Janus tyrosine kinase 3, PNU156804, prolongs allograft survival and acts synergistically with cyclosporine but additively with rapamycin.\tJanus kinase 3 (Jak3) is a cytoplasmic tyrosine (Tyr) kinase associated with the interleukin-2 (IL-2) receptor common gamma chain (gamma(c)) that is activated by multiple T-cell growth factors (TCGFs) such as IL-2, -4, and -7. Using human T cells, it was found that a recently discovered variant of the undecylprodigiosin family of antibiotics, PNU156804, previously shown to inhibit IL-2-induced cell proliferation, also blocks IL-2-mediated Jak3 auto-tyrosine phosphorylation, activation of Jak3 substrates signal transducers and activators of transcription (Stat) 5a and Stat5b, and extracellular regulated kinase 1 (Erk1) and Erk2 (p44/p42). Although PNU156804 displayed similar efficacy in blocking Jak3-dependent T-cell proliferation by IL-2, -4, -7, or -15, it was more than 2-fold less effective in blocking Jak2-mediated cell growth, its most homologous Jak family member. A 14-day alternate-day oral gavage with 40 to 120 mg/kg PNU156804 extended the survival of heart allografts in a dose-dependent fashion. In vivo, PNU156804 acted synergistically with the signal 1 inhibitor cyclosporine A (CsA) and additively with the signal 3 inhibitor rapamycin to block allograft rejection. It is concluded that inhibition of signal 3 alone by targeting Jak3 in combination with a signal 1 inhibitor provides a unique strategy to achieve potent immunosuppression.\n", "responses": ["response:1"]}) + bulkRaw.addJson(data={"id": "response:0", "resourceType":"Response", "text": "\n\nDrug: Psoralen\nTarget: Monoamine oxidase (MAO)\nInteraction Type: Inhibitor\n\nDrug: Isopsoralen\nTarget: Monoamine oxidase (MAO)\nInteraction Type: Inhibitor", "prompt": "prompt:0"}) + bulkRaw.addJson(data={"id": "response:1", "resourceType":"Response", "text": "\n\nDrug-target interactions:\n- PNU156804: inhibitor of Jak3\n- Cyclosporine A: signal 1 inhibitor\n- Rapamycin: signal 3 inhibitor\n\nInteraction types:\n- PNU156804: inhibitor\n- Cyclosporine A: inhibitor\n- Rapamycin: inhibitor/signal transduction inhibitor (exact interaction type not specified in the passage)", "prompt": "prompt:1"}) + err = bulkRaw.execute() + + if err["insertCount"] != 4: + errors.append(f"Wrong number of inserted vertices {err['insertCount']} != 4") + if len(err["errors"]) != 0: + errors.append(f"Wrong number of errors {len(err['errors'])} != 0") + + vertex = G.getVertex("prompt:0")['data']['responses'] + if vertex != ['response:0']: + errors.append("prompt:0 responses != ['response:0']") + + return errors + +def process_graph_schema(path): + with open(path, 'r') as file: + content = file.read() + vertex = yaml.safe_load(content) + id = vertex["id"].split("/")[-1] + return [{"data":vertex, "label": id, "gid": vertex["id"] }] diff --git a/conformance/tests/ot_schema.py b/conformance/tests/ot_schema.py index ebeaccc9..644e1ed7 100644 --- a/conformance/tests/ot_schema.py +++ b/conformance/tests/ot_schema.py @@ -1,5 +1,6 @@ import requests +from pylint import graph def test_getscheama(man): errors = [] diff --git a/schema/graph.go b/schema/graph.go index 59a7db7e..1e1e2f93 100644 --- a/schema/graph.go +++ b/schema/graph.go @@ -6,6 +6,7 @@ import ( "io/ioutil" "os" "path/filepath" + "strings" "github.com/bmeg/grip/log" @@ -143,6 +144,84 @@ func parseGraphFile(relpath string, format string, graphName string) ([]*gripql. graphs, err = ParseYAMLGraphs(source) case "json": graphs, err = ParseJSONGraphs(source) + case "ySchema": + // determine if file or directory + info, err := os.Stat(path) + if err != nil { + if os.IsNotExist(err) { + return nil, fmt.Errorf("path does not exist: %s", path) + } + return nil, fmt.Errorf("error accessing path: %v", err) + } + graphSchema := map[string]any{ + "vertices": []map[string]any{}, + "edges": []map[string]any{}, // Optional: if there are no edges from YAML files + "graph": graphName, + } + if info.IsDir() { + files, err := ioutil.ReadDir(path) + if err != nil { + return nil, fmt.Errorf("failed to read directory: %v", err) + } + + for _, file := range files { + if file.IsDir() || filepath.Ext(file.Name()) != ".yaml" && filepath.Ext(file.Name()) != ".yml" { + continue + } + filePath := filepath.Join(path, file.Name()) + content, err := ioutil.ReadFile(filePath) + if err != nil { + return nil, fmt.Errorf("failed to read file %s: %v", file.Name(), err) + } + vertex, err := ParseYSchemaToVertex(content) + if err != nil { + return nil, fmt.Errorf("failed to parse file %s: %v", file.Name(), err) + } + graphSchema["vertices"] = append(graphSchema["vertices"].([]map[string]any), vertex) + } + + if len(graphSchema["vertices"].([]map[string]any)) == 0 { + return nil, fmt.Errorf("no valid YAML files found in directory: %s", path) + } + + expandedGraph, err := json.Marshal(graphSchema) + if err != nil { + return nil, fmt.Errorf("failed to marshal expanded graph: %v", err) + } + + graph := gripql.Graph{} + if err := json.Unmarshal(expandedGraph, &graph); err != nil { + return nil, fmt.Errorf("failed to unmarshal expanded graph: %v", err) + } + + return []*gripql.Graph{&graph}, nil + } else { + content, err := ioutil.ReadFile(path) + if err != nil { + return nil, fmt.Errorf("failed to read file %s: %v", path, err) + } + vertex, err := ParseYSchemaToVertex(content) + if err != nil { + return nil, fmt.Errorf("failed to parse file %s: %v", path, err) + } + graphSchema["vertices"] = append(graphSchema["vertices"].([]map[string]any), vertex) + if len(graphSchema["vertices"].([]map[string]any)) == 0 { + return nil, fmt.Errorf("%s is not a parsable YAML schema", path) + } + + expandedGraph, err := json.Marshal(graphSchema) + if err != nil { + return nil, fmt.Errorf("failed to marshal expanded graph: %v", err) + } + + graph := gripql.Graph{} + if err := json.Unmarshal(expandedGraph, &graph); err != nil { + return nil, fmt.Errorf("failed to unmarshal expanded graph: %v", err) + } + + return []*gripql.Graph{&graph}, nil + } + case "jSchema": file, err := os.Open(path) if err != nil { @@ -165,6 +244,52 @@ func parseGraphFile(relpath string, format string, graphName string) ([]*gripql. return graphs, nil } +func traverseAndModify(data map[string]any, targetKey string) { + /* Since existing jsonschema lib doesn't like no url paths, convert refs to url basepath + resourceName*/ + for key, value := range data { + if key == targetKey { + if strValue, ok := value.(string); ok { + strValue = strings.TrimSuffix(strValue, ".yaml") + if !(strings.HasPrefix(strValue, "http://") || strings.HasPrefix(strValue, "https://")) { + data[key] = "http://grip-schema.io/schema/0.0.1/" + strValue + } + } + } + switch v := value.(type) { + case map[string]any: + traverseAndModify(v, targetKey) + case []any: + for _, item := range v { + if nestedMap, ok := item.(map[string]any); ok { + traverseAndModify(nestedMap, targetKey) + } + } + } + } +} + +func ParseYSchemaToVertex(bytes []byte) (map[string]any, error) { + var data map[string]any + if err := yaml.Unmarshal(bytes, &data); err != nil { + return nil, fmt.Errorf("failed to unmarshal YAML: %v", err) + } + id, ok := data["$id"] + if !ok { + return nil, fmt.Errorf("missing $id field in YAML document") + } + data["id"] = "http://grip-schema.io/schema/0.0.1/" + id.(string) + delete(data, "$id") + + traverseAndModify(data, "$ref") + vertex := map[string]any{ + "data": data, + "label": id.(string), + "gid": "http://grip-schema.io/schema/0.0.1/" + id.(string), + } + + return vertex, nil +} + func ParseJSchema(bytes []byte, graphName string) ([]*gripql.Graph, error) { graphSchema := map[string]any{ "vertices": []map[string]any{}, @@ -213,8 +338,8 @@ func ParseJsonSchema(relpath string, graphName string) ([]*gripql.Graph, error) return parseGraphFile(relpath, "jSchema", graphName) } -func ParseYamlJsonSchema(relpath string, graphName string) ([]*gripql.Graph, error) { - return parseGraphFile(relpath, "yjSchema", graphName) +func ParseYamlSchemaPath(relpath string, graphName string) ([]*gripql.Graph, error) { + return parseGraphFile(relpath, "ySchema", graphName) } // GraphToYAMLString returns a graph formatted as a YAML string diff --git a/server/api.go b/server/api.go index f17c80ab..7f56213d 100644 --- a/server/api.go +++ b/server/api.go @@ -18,6 +18,7 @@ import ( "google.golang.org/grpc/codes" "google.golang.org/grpc/status" "google.golang.org/protobuf/encoding/protojson" + "google.golang.org/protobuf/types/known/structpb" ) // Traversal parses a traversal request and streams the results back @@ -286,6 +287,7 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error } args := class.ExtraArgs.AsMap() + result, err := out.Generate(resourceType, classData, false, args) if err != nil { log.WithFields(log.Fields{"error": err}).Errorf("BulkAddRaw: validation error for %s: %s", resourceType, classData) @@ -595,7 +597,8 @@ func (server *GripServer) AddSchema(ctx context.Context, req *gripql.Graph) (*gr if err != nil { return nil, fmt.Errorf("failed to store new schema: %v", err) } - server.schemas[req.Graph] = req + + server.schemas[req.Graph] = server.getSchema(req.Graph + "__schema__") return &gripql.EditResult{Id: req.Graph}, nil } @@ -650,3 +653,29 @@ func (server *GripServer) graphExists(graphName string) bool { } return found } + +func (server *GripServer) getSchema(graphName string) *gripql.Graph { + gdb, err := server.getGraphDB(graphName) + if err != nil { + return &gripql.Graph{} + } + gripGraph := gripql.Graph{} + for _, graph := range gdb.ListGraphs() { + if graph == graphName { + found_graph, err := gdb.Graph(graph) + if err != nil { + return &gripql.Graph{} + } + for elem := range found_graph.GetVertexList(context.Background(), true) { + graphelem := elem.Get() + data, _ := structpb.NewStruct(graphelem.Data) + gripGraph.Vertices = append(gripGraph.Vertices, &gripql.Vertex{ + Gid: graphelem.ID, + Label: graphelem.Label, + Data: data, + }) + } + } + } + return &gripGraph +} diff --git a/server/metagraphs.go b/server/metagraphs.go index 7a798ac3..336cbb76 100644 --- a/server/metagraphs.go +++ b/server/metagraphs.go @@ -141,16 +141,12 @@ func (server *GripServer) addFullGraph(ctx context.Context, graphName string, sc if graphName == "" { return fmt.Errorf("graph name is an empty string") } - if server.graphExists(graphName) { - _, err := server.DeleteGraph(ctx, &gripql.GraphID{Graph: graphName}) + if !server.graphExists(graphName) { + _, err := server.AddGraph(ctx, &gripql.GraphID{Graph: graphName}) if err != nil { - return fmt.Errorf("failed to remove previous schema: %v", err) + return fmt.Errorf("error creating graph '%s': %v", graphName, err) } } - _, err := server.AddGraph(ctx, &gripql.GraphID{Graph: graphName}) - if err != nil { - return fmt.Errorf("error creating graph '%s': %v", graphName, err) - } for _, v := range schema.Vertices { _, err := server.addVertex(ctx, &gripql.GraphElement{Graph: graphName, Vertex: v}) if err != nil { From f36548103f4b91091c67becd3e911cb0817a83f9 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Thu, 2 Jan 2025 13:56:23 -0800 Subject: [PATCH 32/35] clean up / improve tests --- conformance/graphs/prompt-schema.json | 96 +++++++++++++++++++++++++++ conformance/tests/ot_bulk_raw.py | 51 +++++++------- conformance/tests/ot_schema.py | 17 +++-- conformance/tests/ot_transform.py | 29 ++++++++ server/api.go | 2 + 5 files changed, 163 insertions(+), 32 deletions(-) create mode 100644 conformance/graphs/prompt-schema.json diff --git a/conformance/graphs/prompt-schema.json b/conformance/graphs/prompt-schema.json new file mode 100644 index 00000000..4518b99c --- /dev/null +++ b/conformance/graphs/prompt-schema.json @@ -0,0 +1,96 @@ +{ + "$schema": "https://json-schema.org/draft/2020-12/schema", + "$id": "http://grip-schema.io/schema/0.0.1", + "$defs": { + "Prompt": { + "$id": "http://grip-schema.io/schema/0.0.1/Prompt", + "additionalProperties": false, + "description": "User generated prompt", + "links": [ + { + "href": "{id}", + "rel": "responses", + "targetHints": { + "direction": [ + "outbound" + ], + "multiplicity": [ + "has_many" + ], + "regex_match": [ + "response:*" + ] + }, + "targetSchema": { + "$ref": "http://grip-schema.io/schema/0.0.1/Response" + }, + "templatePointers": { + "id": "/response" + } + } + ], + "properties": { + "id": { + "type": "string" + }, + "text": { + "type": "string" + }, + "resourceType": { + "type": "string" + }, + "responses": { + "type": "array", + "items": { + "type": "string" + } + } + } + }, + "Response": { + "$id": "http://grip-schema.io/schema/0.0.1/Response", + "additionalProperties": false, + "description": "User LLM generated response", + "links": [ + { + "href": "{id}", + "rel": "prompt", + "targetHints": { + "direction": [ + "outbound" + ], + "multiplicity": [ + "has_one" + ], + "regex_match": [ + "prompt:*" + ] + }, + "targetSchema": { + "$ref": "http://grip-schema.io/schema/0.0.1/Prompt" + }, + "templatePointers": { + "id": "/prompt" + } + } + ], + "properties": { + "id": { + "type": "string" + }, + "text": { + "type": "string" + }, + "resourceType": { + "type": "string" + }, + "prompt": { + "type": "string" + }, + "model": { + "type": "string" + } + } + } + } +} \ No newline at end of file diff --git a/conformance/tests/ot_bulk_raw.py b/conformance/tests/ot_bulk_raw.py index 9bd05376..e98afdc3 100644 --- a/conformance/tests/ot_bulk_raw.py +++ b/conformance/tests/ot_bulk_raw.py @@ -1,37 +1,41 @@ -import requests +import json + +def load_json_schema(path): + with open(path, 'r') as file: + content = file.read() + return json.loads(content) def test_bulk_add_raw(man): errors = [] G = man.writeTest() + G.addJsonSchema(load_json_schema("conformance/graphs/prompt-schema.json")) - # Probably don't want to add a 2MB schema file to the repo so get it via requests instead - res = requests.get("https://raw.githubusercontent.com/bmeg/iceberg/f1724941fe47df24846135fb515d1b89e791cee3/schemas/graph/graph-fhir.json") - res.raise_for_status() - G.addJsonSchema(res.json()) + fetchedSchema = G.getSchema() + len_vertices = len(fetchedSchema['vertices']) + if len_vertices != 2: + errors.append(f"incorrect number of vertices in schema {len_vertices} != 2") bulkRaw = G.bulkAddRaw() - # fhir data from https://github.com/bmeg/iceberg-schema-tools/tree/main/tests/fixtures/simplify-fhir-hypermedia - bulkRaw.addJson(data={"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"230690007","display":"Stroke","system":"http://snomed.info/sct"}],"text":"Stroke"},"encounter":{"reference":"Encounter/f78a1442-683a-4ea2-adca-161902be19cb"},"id":"838e42fb-a65d-4039-9f83-59c37b1ae889","links":[{"href":"Patient/45c11dad-2b38-4c8e-822e-7abff8a1ee1d","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:21:56.658+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#DmW9sueQ4yuQdyA9","versionId":"1"},"onsetDateTime":"2013-08-24T15:40:53-04:00","recordedDate":"2013-08-24T15:40:53-04:00","resourceType":"Condition","subject":{"reference":"Patient/45c11dad-2b38-4c8e-822e-7abff8a1ee1d"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}) - bulkRaw.addJson(data={"resourceType":"Patient","id":"041095c0-41b7-4cad-be5d-5942f5e72331","meta":{"versionId":"1","lastUpdated":"2023-01-26T15:09:27.533+00:00","source":"#2bs0ExNirFINpsaq","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient"]},"text":{"status":"generated","div":"
    Generated by Synthea.Version identifier: v2.6.1-174-g66c40fa7\n . Person seed: -5631757156564495430 Population seed: 1626964256551
    "},"extension":[{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-race","extension":[{"url":"ombCategory","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2106-3","display":"White"}},{"url":"text","valueString":"White"}]},{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity","extension":[{"url":"ombCategory","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2186-5","display":"Non Hispanic or Latino"}},{"url":"text","valueString":"Non Hispanic or Latino"}]},{"url":"http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName","valueString":"Johnie961 Howe413"},{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex","valueCode":"M"},{"url":"http://hl7.org/fhir/StructureDefinition/patient-birthPlace","valueAddress":{"city":"Leominster","state":"Massachusetts","country":"US"}},{"url":"http://synthetichealth.github.io/synthea/disability-adjusted-life-years","valueDecimal":11.356925230821238},{"url":"http://synthetichealth.github.io/synthea/quality-adjusted-life-years","valueDecimal":84.64307476917877}],"identifier":[{"system":"https://github.com/synthetichealth/synthea","value":"98a6c929-b2cb-9719-ba06-ae2d693d1964"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"MR","display":"Medical Record Number"}],"text":"Medical Record Number"},"system":"http://hospital.smarthealthit.org","value":"98a6c929-b2cb-9719-ba06-ae2d693d1964"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"SS","display":"Social Security Number"}],"text":"Social Security Number"},"system":"http://hl7.org/fhir/sid/us-ssn","value":"999-54-8135"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"DL","display":"Driver's License"}],"text":"Driver's License"},"system":"urn:oid:2.16.840.1.113883.4.3.25","value":"S99944955"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"PPN","display":"Passport Number"}],"text":"Passport Number"},"system":"http://standardhealthrecord.org/fhir/StructureDefinition/passportNumber","value":"X88746034X"}],"name":[{"use":"official","family":"Schiller186","given":["Stewart672"],"prefix":["Mr."]}],"telecom":[{"system":"phone","value":"555-164-3643","use":"home"}],"gender":"male","birthDate":"1924-09-05","address":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/geolocation","extension":[{"url":"latitude","valueDecimal":42.251447299625795},{"url":"longitude","valueDecimal":-71.10142275622101}]}],"line":["955 Willms Manor"],"city":"Milton","state":"MA","country":"US"}],"maritalStatus":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v3-MaritalStatus","code":"M","display":"M"}],"text":"M"},"multipleBirthBoolean":False,"communication":[{"language":{"coding":[{"system":"urn:ietf:bcp:47","code":"en-US","display":"English"}],"text":"English"}}],"links":[]}) - + bulkRaw.addJson(data={"id": "prompt:0", "resourceType":"Prompt", "text": "Identify the drug-target interactions in the passage given below (along with the interaction type among the following: 'inhibitor', 'agonist', 'modulator', 'activator', 'blocker', 'inducer', 'antagonist', 'cleavage', 'disruption', 'intercalation', 'inactivator', 'bind', 'binder', 'partial agonist', 'cofactor', 'substrate', 'ligand', 'chelator', 'downregulator', 'other', 'antibody', 'other/unknown'):\n\nInhibition of rat brain monoamine oxidase activities by psoralen and isopsoralen: implications for the treatment of affective disorders. Psoralen and isopsoralen, furocoumarins isolated from the plant Psoralea corylifolia L., were demonstrated to exhibit in vitro inhibitory actions on monoamine oxidase (MAO) activities in rat brain mitochondria, preferentially inhibiting MAO-A activity over MAO-B activity. This inhibition of enzyme activities was found to be dose-dependent and reversible. For MAO-A, the IC50 values are 15.2 +/- 1.3 microM psoralen and 9.0 +/- 0.6 microM isopsoralen. For MAO-B, the IC50 values are 61.8 +/- 4.3 microM psoralen and 12.8 +/- 0.5 microM isopsoralen. Lineweaver-Burk transformation of the inhibition data indicates that inhibition by both psoralen and isopsoralen is non-competitive for MAO-A. The Ki values were calculated to be 14.0 microM for psoralen and 6.5 microM for isopsoralen. On the other hand, inhibition by both psoralen and isopsoralen is competitive for MAO-B. The Ki values were calculated to be 58.1 microM for psoralen and 10.8 microM for isopsoralen. These inhibitory actions of psoralen and isopsoralen on rat brain mitochondrial MAO activities are discussed in relation to their toxicities and their potential applications to treat affective disorders.\n", "responses": ["response:0"]}) + bulkRaw.addJson(data={"id": "prompt:1", "resourceType":"Prompt", "text": "Identify the drug-target interactions in the passage given below (along with the interaction type among the following: 'inhibitor', 'agonist', 'modulator', 'activator', 'blocker', 'inducer', 'antagonist', 'cleavage', 'disruption', 'intercalation', 'inactivator', 'bind', 'binder', 'partial agonist', 'cofactor', 'substrate', 'ligand', 'chelator', 'downregulator', 'other', 'antibody', 'other/unknown'):\n\nSelective inhibitor of Janus tyrosine kinase 3, PNU156804, prolongs allograft survival and acts synergistically with cyclosporine but additively with rapamycin.\tJanus kinase 3 (Jak3) is a cytoplasmic tyrosine (Tyr) kinase associated with the interleukin-2 (IL-2) receptor common gamma chain (gamma(c)) that is activated by multiple T-cell growth factors (TCGFs) such as IL-2, -4, and -7. Using human T cells, it was found that a recently discovered variant of the undecylprodigiosin family of antibiotics, PNU156804, previously shown to inhibit IL-2-induced cell proliferation, also blocks IL-2-mediated Jak3 auto-tyrosine phosphorylation, activation of Jak3 substrates signal transducers and activators of transcription (Stat) 5a and Stat5b, and extracellular regulated kinase 1 (Erk1) and Erk2 (p44/p42). Although PNU156804 displayed similar efficacy in blocking Jak3-dependent T-cell proliferation by IL-2, -4, -7, or -15, it was more than 2-fold less effective in blocking Jak2-mediated cell growth, its most homologous Jak family member. A 14-day alternate-day oral gavage with 40 to 120 mg/kg PNU156804 extended the survival of heart allografts in a dose-dependent fashion. In vivo, PNU156804 acted synergistically with the signal 1 inhibitor cyclosporine A (CsA) and additively with the signal 3 inhibitor rapamycin to block allograft rejection. It is concluded that inhibition of signal 3 alone by targeting Jak3 in combination with a signal 1 inhibitor provides a unique strategy to achieve potent immunosuppression.\n", "responses": ["response:1"]}) + bulkRaw.addJson(data={"id": "response:0", "resourceType":"Response", "text": "\n\nDrug: Psoralen\nTarget: Monoamine oxidase (MAO)\nInteraction Type: Inhibitor\n\nDrug: Isopsoralen\nTarget: Monoamine oxidase (MAO)\nInteraction Type: Inhibitor", "prompt": "prompt:0"}) + bulkRaw.addJson(data={"id": "response:1", "resourceType":"Response", "text": "\n\nDrug-target interactions:\n- PNU156804: inhibitor of Jak3\n- Cyclosporine A: signal 1 inhibitor\n- Rapamycin: signal 3 inhibitor\n\nInteraction types:\n- PNU156804: inhibitor\n- Cyclosporine A: inhibitor\n- Rapamycin: inhibitor/signal transduction inhibitor (exact interaction type not specified in the passage)", "prompt": "prompt:1"}) err = bulkRaw.execute() + if err["insertCount"] != 4: errors.append(f"Wrong number of inserted vertices {err['insertCount']} != 4") if len(err["errors"]) != 0: errors.append(f"Wrong number of errors {len(err['errors'])} != 0") - vertex = G.getVertex("838e42fb-a65d-4039-9f83-59c37b1ae889") - if "auth_resource_path" not in vertex["data"] or vertex["data"]["auth_resource_path"] != "test-data": - errors.append("ExtraArg auth_resource_path of value test-data not added to vertex") - - if "gid" not in vertex or vertex["gid"] != "838e42fb-a65d-4039-9f83-59c37b1ae889": - errors.append("bulkraw inserted edge with id 838e42fb-a65d-4039-9f83-59c37b1ae889 not found") + vertex = G.getVertex("prompt:0")['data']['responses'] + if vertex != ['response:0']: + errors.append("prompt:0 responses != ['response:0']") labels = G.listLabels() - if not all(item in labels['vertexLabels'] for item in ['Condition', 'Patient']) or not all (item in labels['edgeLabels'] for item in ['condition', 'subject_Patient']): - errors.append(f"After insert operations {labels} != expected {{'vertexLabels': ['Condition', 'Patient'], 'edgeLabels': ['condition', 'subject_Patient']}}") + if not all(item in labels['vertexLabels'] for item in ['Prompt', 'Response']): + errors.append(f"After insert operations {labels} != expected {{'vertexLabels': ['Condition', 'Patient']}}") return errors @@ -40,16 +44,13 @@ def test_bulk_add_raw(man): def test_bulk_add_raw_validation_error(man): errors = [] G = man.writeTest() - - # Probably don't want to add a 2MB schema file to the repo so get it via requests instead - res = requests.get("https://raw.githubusercontent.com/bmeg/iceberg/f1724941fe47df24846135fb515d1b89e791cee3/schemas/graph/graph-fhir.json") - res.raise_for_status() - s = G.addJsonSchema(res.json()) + G.addJsonSchema(load_json_schema("conformance/graphs/prompt-schema.json")) bulkRaw = G.bulkAddRaw() - # fhir data from https://github.com/bmeg/iceberg-schema-tools/tree/main/tests/fixtures/simplify-fhir-hypermedia - bulkRaw.addJson(data={"category":[{"coding":[{"code":"encounter-diagnosis","display":"Encounter Diagnosis","system":"http://terminology.hl7.org/CodeSystem/condition-category"}]}],"clinicalStatus":{"coding":[{"code":"active","system":"http://terminology.hl7.org/CodeSystem/condition-clinical"}]},"code":{"coding":[{"code":"230690007","display":"Stroke","system":"http://snomed.info/sct"}],"text":"Stroke"},"encounter":{"reference":"Encounter/f78a1442-683a-4ea2-adca-161902be19cb"},"id":"838e42fb-a65d-4039-9f83-59c37b1ae889","links":[{"href":"Patient/45c11dad-2b38-4c8e-822e-7abff8a1ee1d","rel":"subject_Patient"}],"meta":{"lastUpdated":"2023-01-26T14:21:56.658+00:00","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-condition"],"source":"#DmW9sueQ4yuQdyA9","versionId":"1"},"onsetDateTime":"2013-08-24T15:40:53-04:00","recordedDate":"2013-08-24T15:40:53-04:00","resourceType":"Condition","subject":{"reference":"Patient/45c11dad-2b38-4c8e-822e-7abff8a1ee1d"},"verificationStatus":{"coding":[{"code":"confirmed","system":"http://terminology.hl7.org/CodeSystem/condition-ver-status"}]}}) - bulkRaw.addJson(data={"resourceType":"Patient","id":"041095c0-41b7-4cad-be5d-5942f5e72331","meta":{"versionId":"1","lastUpdated":"2023-01-26T15:09:27.533+00:00","source":"#2bs0ExNirFINpsaq","profile":["http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient"]},"text":{"status":"generated","div":"
    Generated by Synthea.Version identifier: v2.6.1-174-g66c40fa7\n . Person seed: -5631757156564495430 Population seed: 1626964256551
    "},"extension":[{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-race","extension":[{"url":"ombCategory","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2106-3","display":"White"}},{"url":"text","valueString":"White"}]},{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity","extension":[{"url":"ombCategory","valueCoding":{"system":"urn:oid:2.16.840.1.113883.6.238","code":"2186-5","display":"Non Hispanic or Latino"}},{"url":"text","valueString":"Non Hispanic or Latino"}]},{"url":"http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName","valueString":"Johnie961 Howe413"},{"url":"http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex","valueCode":"M"},{"url":"http://hl7.org/fhir/StructureDefinition/patient-birthPlace","valueAddress":{"city":"Leominster","state":"Massachusetts","country":"US"}},{"url":"http://synthetichealth.github.io/synthea/disability-adjusted-life-years","valueDecimal":11.356925230821238},{"url":"http://synthetichealth.github.io/synthea/quality-adjusted-life-years","valueDecimal":84.64307476917877}],"ider":[{"system":"https://github.com/synthetichealth/synthea","value":"98a6c929-b2cb-9719-ba06-ae2d693d1964"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"MR","display":"Medical Record Number"}],"text":"Medical Record Number"},"system":"http://hospital.smarthealthit.org","value":"98a6c929-b2cb-9719-ba06-ae2d693d1964"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"SS","display":"Social Security Number"}],"text":"Social Security Number"},"system":"http://hl7.org/fhir/sid/us-ssn","value":"999-54-8135"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"DL","display":"Driver's License"}],"text":"Driver's License"},"system":"urn:oid:2.16.840.1.113883.4.3.25","value":"S99944955"},{"type":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v2-0203","code":"PPN","display":"Passport Number"}],"text":"Passport Number"},"system":"http://standardhealthrecord.org/fhir/StructureDefinition/passportNumber","value":"X88746034X"}],"name":[{"use":"official","family":"Schiller186","given":["Stewart672"],"prefix":["Mr."]}],"telecom":[{"system":"phone","value":"555-164-3643","use":"home"}],"gender":"male","birthDate":"1924-09-05","address":[{"extension":[{"url":"http://hl7.org/fhir/StructureDefinition/geolocation","extension":[{"url":"latitude","valueDecimal":42.251447299625795},{"url":"longitude","valueDecimal":-71.10142275622101}]}],"line":["955 Willms Manor"],"city":"Milton","state":"MA","country":"US"}],"maritalStatus":{"coding":[{"system":"http://terminology.hl7.org/CodeSystem/v3-MaritalStatus","code":"M","display":"M"}],"text":"M"},"multipleBirthBoolean":False,"communication":[{"language":{"coding":[{"system":"urn:ietf:bcp:47","code":"en-US","display":"English"}],"text":"English"}}],"links":[]}) + bulkRaw.addJson(data={"id": "prompt:0", "resourceType":"Prompt", "text": "Identify the drug-target interactions in the passage given below (along with the interaction type among the following: 'inhibitor', 'agonist', 'modulator', 'activator', 'blocker', 'inducer', 'antagonist', 'cleavage', 'disruption', 'intercalation', 'inactivator', 'bind', 'binder', 'partial agonist', 'cofactor', 'substrate', 'ligand', 'chelator', 'downregulator', 'other', 'antibody', 'other/unknown'):\n\nInhibition of rat brain monoamine oxidase activities by psoralen and isopsoralen: implications for the treatment of affective disorders. Psoralen and isopsoralen, furocoumarins isolated from the plant Psoralea corylifolia L., were demonstrated to exhibit in vitro inhibitory actions on monoamine oxidase (MAO) activities in rat brain mitochondria, preferentially inhibiting MAO-A activity over MAO-B activity. This inhibition of enzyme activities was found to be dose-dependent and reversible. For MAO-A, the IC50 values are 15.2 +/- 1.3 microM psoralen and 9.0 +/- 0.6 microM isopsoralen. For MAO-B, the IC50 values are 61.8 +/- 4.3 microM psoralen and 12.8 +/- 0.5 microM isopsoralen. Lineweaver-Burk transformation of the inhibition data indicates that inhibition by both psoralen and isopsoralen is non-competitive for MAO-A. The Ki values were calculated to be 14.0 microM for psoralen and 6.5 microM for isopsoralen. On the other hand, inhibition by both psoralen and isopsoralen is competitive for MAO-B. The Ki values were calculated to be 58.1 microM for psoralen and 10.8 microM for isopsoralen. These inhibitory actions of psoralen and isopsoralen on rat brain mitochondrial MAO activities are discussed in relation to their toxicities and their potential applications to treat affective disorders.\n", "responses": ["response:0"]}) + bulkRaw.addJson(data={"id": ["prompt:1"], "resourceType":"Prompt", "text": "Identify the drug-target interactions in the passage given below (along with the interaction type among the following: 'inhibitor', 'agonist', 'modulator', 'activator', 'blocker', 'inducer', 'antagonist', 'cleavage', 'disruption', 'intercalation', 'inactivator', 'bind', 'binder', 'partial agonist', 'cofactor', 'substrate', 'ligand', 'chelator', 'downregulator', 'other', 'antibody', 'other/unknown'):\n\nSelective inhibitor of Janus tyrosine kinase 3, PNU156804, prolongs allograft survival and acts synergistically with cyclosporine but additively with rapamycin.\tJanus kinase 3 (Jak3) is a cytoplasmic tyrosine (Tyr) kinase associated with the interleukin-2 (IL-2) receptor common gamma chain (gamma(c)) that is activated by multiple T-cell growth factors (TCGFs) such as IL-2, -4, and -7. Using human T cells, it was found that a recently discovered variant of the undecylprodigiosin family of antibiotics, PNU156804, previously shown to inhibit IL-2-induced cell proliferation, also blocks IL-2-mediated Jak3 auto-tyrosine phosphorylation, activation of Jak3 substrates signal transducers and activators of transcription (Stat) 5a and Stat5b, and extracellular regulated kinase 1 (Erk1) and Erk2 (p44/p42). Although PNU156804 displayed similar efficacy in blocking Jak3-dependent T-cell proliferation by IL-2, -4, -7, or -15, it was more than 2-fold less effective in blocking Jak2-mediated cell growth, its most homologous Jak family member. A 14-day alternate-day oral gavage with 40 to 120 mg/kg PNU156804 extended the survival of heart allografts in a dose-dependent fashion. In vivo, PNU156804 acted synergistically with the signal 1 inhibitor cyclosporine A (CsA) and additively with the signal 3 inhibitor rapamycin to block allograft rejection. It is concluded that inhibition of signal 3 alone by targeting Jak3 in combination with a signal 1 inhibitor provides a unique strategy to achieve potent immunosuppression.\n", "responses": ["response:1"]}) + bulkRaw.addJson(data={"id": "response:0", "resourceType":"Response", "text": "\n\nDrug: Psoralen\nTarget: Monoamine oxidase (MAO)\nInteraction Type: Inhibitor\n\nDrug: Isopsoralen\nTarget: Monoamine oxidase (MAO)\nInteraction Type: Inhibitor", "prompt": "prompt:0"}) + bulkRaw.addJson(data={"id": "response:1", "resourceType":"Response", "text": "\n\nDrug-target interactions:\n- PNU156804: inhibitor of Jak3\n- Cyclosporine A: signal 1 inhibitor\n- Rapamycin: signal 3 inhibitor\n\nInteraction types:\n- PNU156804: inhibitor\n- Cyclosporine A: inhibitor\n- Rapamycin: inhibitor/signal transduction inhibitor (exact interaction type not specified in the passage)", "prompt": "prompt:1"}) err = bulkRaw.execute() if err['insertCount'] != 3 or len(err['errors']) != 1: diff --git a/conformance/tests/ot_schema.py b/conformance/tests/ot_schema.py index 644e1ed7..06415c68 100644 --- a/conformance/tests/ot_schema.py +++ b/conformance/tests/ot_schema.py @@ -1,5 +1,5 @@ -import requests +import json from pylint import graph def test_getscheama(man): @@ -34,16 +34,19 @@ def test_getscheama(man): def test_post_json_schema(man): errors = [] G = man.setGraph("swapi") - # Probably don't want to add a 2MB schema file to the repo so get it via requests instead - res = requests.get("https://raw.githubusercontent.com/bmeg/iceberg/f1724941fe47df24846135fb515d1b89e791cee3/schemas/graph/graph-fhir.json") - res.raise_for_status() - s = G.addJsonSchema(res.json()) + G.addJsonSchema(load_json_schema("conformance/graphs/prompt-schema.json")) fetched_schema = G.getSchema() len_vertices = len(fetched_schema['vertices']) - if len_vertices != 137: - errors.append(f"incorrect number of vertices in schema {len_vertices} != 137") + if len_vertices != 2: + errors.append(f"incorrect number of vertices in schema {len_vertices} != 2") len_edges = len(fetched_schema['edges']) if len_edges != 0: errors.append(f"incorrect number of edges in schema {len_vertices} != 0") return errors + + +def load_json_schema(path): + with open(path, 'r') as file: + content = file.read() + return json.loads(content) diff --git a/conformance/tests/ot_transform.py b/conformance/tests/ot_transform.py index f3c9fdc4..b7a9b39c 100644 --- a/conformance/tests/ot_transform.py +++ b/conformance/tests/ot_transform.py @@ -1,4 +1,5 @@ +from re import I import gripql def test_count(man): @@ -8,7 +9,9 @@ def test_count(man): q = G.query().V().hasLabel("Planet").unwind("terrain").aggregate(gripql.term("t", "terrain")) count = 0 + for row in q: + print("ROW: ", row) if row['key'] not in ['rainforests', 'desert', 'mountains', 'jungle', 'rainforests', 'grasslands']: errors.append("Incorrect value %s returned" % row['key']) if row['value'] != 1: @@ -19,3 +22,29 @@ def test_count(man): errors.append("Incorrect # elements returned") return errors + + +def test_unwind(man): + errors = [] + G = man.writeTest() + bulk = G.bulkAdd() + bulk.addVertex("1", "Observation", {"resourceType": "Observation", "id": "e87cecef-c91d-3861-a35e-6eaed41580c8", "status": "final", "category": [{"coding": [{"system": "http://terminology.hl7.org/CodeSystem/observation-category", "code": "laboratory", "display": "laboratory"}]}], "code": {"coding": [{"system": "http://loinc.org", "code": "81247-9", "display": "Master HL7 genetic variant reporting panel"}]}, "subject": {"reference": "Patient/ac0d7a82-82cb-4aec-b859-e37375f3de8b"}, "specimen": {"reference": "Specimen/dc48f578-193c-4740-93f3-61a78e3c6ba0"}, "focus": [{"reference": "Specimen/dc48f578-193c-4740-93f3-61a78e3c6ba0"}], "effectiveDateTime": "2024-06-03T08:00:00+00:00", "valueString": "Sequencing parameters", "component": [{"code": {"coding": [{"system": "https://cadsr.cancer.gov/sample_laboratory_observation", "code": "concentration", "display": "concentration"}], "text": "concentration"}, "valueQuantity": {"value": 0.16}}, {"code": {"coding": [{"system": "https://cadsr.cancer.gov/sample_laboratory_observation", "code": "aliquot_quantity", "display": "aliquot_quantity"}], "text": "aliquot_quantity"}, "valueQuantity": {"value": 2.13}}, {"code": {"coding": [{"system": "https://cadsr.cancer.gov/sample_laboratory_observation", "code": "aliquot_volume", "display": "aliquot_volume"}], "text": "aliquot_volume"}, "valueQuantity": {"value": 13.3}}]}) + err = bulk.execute() + + q = G.query().V().hasLabel("Observation").unwind("component") + count = 0 + for row in q: + #print("ROW: ", row) + count +=1 + if count != 3: + errors.append("There should be 3 vertices after unwind process") + + q = G.query().V().hasLabel("Observation").unwind("component").has(gripql.gt("component.valueQuantity.value", 1)) + count = 0 + for r in q: + print("ROW: ", r) + count +=1 + if count != 3: + errors.append("There should be 2 vertices after unwind process and filter") + + return errors diff --git a/server/api.go b/server/api.go index 7f56213d..1ecc8e33 100644 --- a/server/api.go +++ b/server/api.go @@ -279,6 +279,8 @@ func (server *GripServer) BulkAddRaw(stream gripql.Edit_BulkAddRawServer) error }() classData := class.Data.AsMap() + + // to generate grip data, need to know what type the data is. resourceType, ok := classData["resourceType"].(string) if !ok { log.WithFields(log.Fields{"error": fmt.Errorf("row %s does not have required field resourceType", classData)}).Error("BulkAddRaw: streaming error") From 683df7adb36fbe453ad235990b1cbd70292323e7 Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Thu, 2 Jan 2025 13:59:32 -0800 Subject: [PATCH 33/35] cleanup --- conformance/tests/ot_transform.py | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/conformance/tests/ot_transform.py b/conformance/tests/ot_transform.py index b7a9b39c..77c385fe 100644 --- a/conformance/tests/ot_transform.py +++ b/conformance/tests/ot_transform.py @@ -11,7 +11,6 @@ def test_count(man): count = 0 for row in q: - print("ROW: ", row) if row['key'] not in ['rainforests', 'desert', 'mountains', 'jungle', 'rainforests', 'grasslands']: errors.append("Incorrect value %s returned" % row['key']) if row['value'] != 1: @@ -42,9 +41,8 @@ def test_unwind(man): q = G.query().V().hasLabel("Observation").unwind("component").has(gripql.gt("component.valueQuantity.value", 1)) count = 0 for r in q: - print("ROW: ", r) count +=1 - if count != 3: + if count != 2: errors.append("There should be 2 vertices after unwind process and filter") return errors From c2dbbc7c623061153da0ae572333d2b1ec12f6af Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Thu, 2 Jan 2025 14:01:37 -0800 Subject: [PATCH 34/35] cleanup --- conformance/tests/ot_schema.py | 1 - 1 file changed, 1 deletion(-) diff --git a/conformance/tests/ot_schema.py b/conformance/tests/ot_schema.py index 06415c68..18ae04fa 100644 --- a/conformance/tests/ot_schema.py +++ b/conformance/tests/ot_schema.py @@ -1,6 +1,5 @@ import json -from pylint import graph def test_getscheama(man): errors = [] From 9654ae9fc7a2b094ea9937ad7cbdab5a37934c2e Mon Sep 17 00:00:00 2001 From: matthewpeterkort Date: Thu, 2 Jan 2025 14:24:12 -0800 Subject: [PATCH 35/35] Add gripql query function calls --- gripql/query.go | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/gripql/query.go b/gripql/query.go index 3f1cb6f2..dd99e420 100644 --- a/gripql/query.go +++ b/gripql/query.go @@ -199,6 +199,15 @@ func (q *Query) Aggregate(agg []*Aggregate) *Query { return q.with(&GraphStatement{Statement: &GraphStatement_Aggregate{Aggregate: &Aggregations{Aggregations: agg}}}) } +func (q *Query) Pivot(id string, field string, value string) *Query { + return q.with(&GraphStatement{Statement: &GraphStatement_Pivot{Pivot: &PivotStep{Id: id, Field: field, Value: value}}}) +} + +// Deconstruct a vertex with an array of n fields as n vertices with no array, and a dict object instead +func (q *Query) Unwind(path string) *Query { + return q.with(&GraphStatement{Statement: &GraphStatement_Unwind{Unwind: path}}) +} + func (q *Query) String() string { parts := []string{} add := func(name string, x ...string) {