Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Segmentation Fault #28

Open
cellmem opened this issue Dec 1, 2017 · 0 comments
Open

Segmentation Fault #28

cellmem opened this issue Dec 1, 2017 · 0 comments

Comments

@cellmem
Copy link

cellmem commented Dec 1, 2017

I'm seeing these errors when I run piPipes:
piPipes_smallRNA_bed2_to_bw.sh: line 32: 13962 Segmentation fault piPipes_bed2_to_bedGraph -i $OUTDIR/${INPUT_BED_NAME%bed2}sorted.bed2 -c $CHROM -p $CPU -o $OUTDIR/${INPUT_BED_NAME%bed2}sorted.

piPipes_smallRNA_bed2_to_bw.sh: line 33: 13965 Segmentation fault piPipes_bed2_to_bedGraph -i $OUTDIR/${INPUT_BED_NAME%bed2}sorted.uniq.bed2 -c $CHROM -p $CPU -o $OUTDIR/${INPUT_BED_NAME%bed2}sorted.uniq.

As far as I can tell, these are the only errors thrown. The transposon_piRNAcluster_mapping_normalized_by_mirna and the bigWig_normalized_by_mirna folders are empty. Any ideas?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant