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2015_brainhack_proceedings.bib
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2015_brainhack_proceedings.bib
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@incollection{badhwar2016,
author = {AmanPreet Badhwar and David Kennedy and Jean-Baptiste Poline and Roberto Toro},
title = {Distributed collaboration: the case for the enhancement of Brainspell's interface},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {1--2},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Badhwar_HBM_Brainspell/master/brainhack-report-formatted.pdf"
}
@incollection{cipollini2016,
author = {Ben Cipollini and Ariel Rokem},
title = {Advancing open science through NiData},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {2--3},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Cipollini_HBM_NiData/master/Cipollini_HBM_NiData.pdf"
}
@incollection{clark2016,
author = {Daniel Clark and Krzysztof J. Gorgolewski and R. Cameron Craddock},
title = {Integrating the Brain Imaging Data Structure (BIDS) standard into C-PAC},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {3--4},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/clark_mx15_bids/master/brainhack-report-formatted.pdf"
}
@incollection{craddockcentrality2016,
author = {R. Cameron Craddock and Daniel J. Clark},
title = {Optimized implementations of voxel-wise degree centrality and local functional connectivity density mapping in AFNI},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {4--6},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Craddock-AMX-Centrality/9fb451fec620100f8ca27e6418909c2277842390/Craddock-AMX-Centrality.pdf"
}
@incollection{loris2016,
author = {Samir Das and C{\'e}cile Madjar and Ayan Sengupta and Zia Mohades},
title = {LORIS: DICOM Anonymizer},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {6},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Das_HBM_LORIS/master/brainhack-report-formatted.pdf"
}
@incollection{dery2016,
author = {Sebastien Dery},
title = {Automatic extraction of academic collaborations in neuroimaging},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {7--8},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Dery_HBM_ClubsOfScience/master/report/brainhack-report-formatted.pdf"
}
@incollection{deng2016,
author = {Weiran Deng},
title = {NiftyView: a zero-footprint web application for viewing DICOM and NIfTI files},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {8--9},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Ding-OHBM-niftyview/master/brainhack-report-formatted.pdf"
}
@incollection{earl2016,
author = {Eric Earl and Damion V. Demeter and Kate Mills and Glad Mihai and Luka Ruzic and Nick Ketz, Andrew Reineberg and Marianne C. Reddan and Anne-Lise Goddings and Javier Gonzalez-Castillo and Krzysztof J. Gorgolewski},
title = {Human Connectome Project Minimal Preprocessing Pipelines to Nipype},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {9--10},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Earl_HBM_HCP_Nipype/master/brainhack-report-formatted.pdf"
}
@incollection{froehlich2016,
author = {Caroline Froehlich and Gil Dekel and Daniel S. Margulies and R. Cameron Craddock},
title = {Generating music with resting-state fMRI data},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {10--11},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Earl_HBM_HCP_Nipype/master/brainhack-report-formatted.pdf"
}
@incollection{fulcher2016,
author = {Ben D. Fulcher},
title = {Highly Comparable Time-Series Analysis in Nitime},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {11},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Fulcher_HBM_Comparable_NITIME/master/brainhack-report-formatted.pdf"
}
@incollection{glatard2016,
author = {Tristan Glatard and Samir Das and Reza Adalat and Natacha Beck and R{\'e}mi Bernard and Najmeh
Khalili-Mahani and Pierre Rioux and Marc-{\'E}tienne Rousseau and Alan C. Evans},
title = {Nipype interfaces in CBRAIN},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {R. Cameron Craddock and Pierre Bellec and Daniel Margulies and Nichold, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {12},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Glatard_HBM_Nipype_CBRAIN/master/brainhack-report-formatted.pdf"
}
@incollection{halchenko2016,
author = {Yaroslav O. Halchenko and Matteo Visconti di Oleggio Castello},
title = {DueCredit: automated collection of citations for software, methods, and data},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {12--13},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Halchenko_OHBM_DueCredit/master/brainhack-report-formatted.pdf"
}
@incollection{hernandez2016,
author = {Ra{\'u}l Hern{\'a}ndez-P{\'e}rez and Edgar A. Morales and Laura V. Cuaya},
title = {Open source low-cost device to register dog’s heart rate and tail movement},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {13--14},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Hernandez-AMX-DogVest/master/brainhack-report-formatted.pdf"
}
@incollection{ito2016,
author = {Kaori L. Ito and Sook-Lei Liew},
title = {Calculating the Laterality Index Using FSL for Stroke Neuroimaging Data},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {14--15},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/ITO-AMX-LI/master/brainhack-report-formatted.pdf"
}
@incollection{johnson2016,
author = {David G. Ellis and Regina E.Y. Kim and Ipek Oguz and Hans J. Johnson},
title = {Wrapping FreeSurfer 6 for use in High-performance Computing Environments},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {16},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Johnson_HBM_FreeSurferHPE/master/brainhack-report-formatted.pdf"
}
@incollection{kan2016,
author = {Eric Kan and Julia Anglin and Michael Borich and Neda Jahanshad and Paul Thompson and Sook-Lei Liew3*},
title = {Facilitating Big Data Meta-Analyses for Clinical Neuroimaging through ENIGMA Wrapper Scripts},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {17--19},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Kan-AMX-ENIGMA-Wrapper-Scripts/master/ENIGMA-Abstract/enigma_report.pdf"
}
@incollection{margulies2016,
author = {Daniel S Margulies and Marcel Falkiewicz and Julia M Huntenburg},
title = {A cortical surface-based geodesic distance package for Python},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {19--20},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Margulies-AMX-Surfdist/master/brainhack-report-formatted.pdf"
}
@incollection{oconnor2016,
author = {David O’Connor and Daniel J. Clark and Michael P. Milham and R. Cameron Craddock},
title = {Sharing data in the cloud},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {20--21},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Oconnor_HBM_INDICloud/master/brainhack-report-formatted.pdf"
}
@incollection{pereira2016,
author = {Ramon Fraga Pereira and Anibal S{\'o}lon Heinsfeld and Alexandre Rosa Franco and Augusto Buchweitz and Felipe Meneguzzi},
title = {Detecting task-based fMRI compliance using plan abandonment techniques},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {21--22},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Pereira-AMX-PlanAbandonment/master/brainhack-report-formatted.pdf"
}
@incollection{pfan2016,
author = {J{\"o}rg P. Pfannm{\"o}ller and Rickson C. Mesquita and Luis C.T. Herrera and Daniela Dentico},
title = {Self-Organization and Brain Function},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {22--23},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Pfan_HBM_SOBF/master/brainhack-report-formatted.pdf"
}
@incollection{sochat2016,
author = {Vanessa Sochat and B Nolan Nichols},
title = {The Neuroimaging Data Model (NIDM) API},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {23--24},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Sochat-AMX-NIDM/master/brainhack-report-formatted.pdf"
}
@incollection{solon2016,
author = {Anibal S{\'o}lon Heinsfeld and Alexandre Rosa Franco and Augusto Buchweitz and Felipe Meneguzzi},
title = {NeuroView: a customizable browser-base utility},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {25},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Solon-AMX-neuroview/master/brainhack-report-formatted.pdf"
}
@incollection{villa2016,
author = {Julia E. Villalon-Reina and Eleftherios Garyfallidis},
title = {DIPY: Brain tissue classification},
booktitle = {2015 Brainhack Proceedings},
publisher = {GigaScience Journal},
year = 2016,
editor = {Craddock, R. Cameron and Bellec, Pierre and Margulies, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P.},
pages = {25--26},
issn = "2047-217X",
doi = "10.1186/s13742-016-0147-0",
url = "https://cdn.rawgit.com/Brainhack-Proceedings-2015/Villa_HBM_DIPY/master/brainhack-report-formatted.pdf"
}
@Article{Craddock2016_all,
author={Craddock, R. Cameron and Bellec, Pierre and Margules, Daniel S. and Nichols, B. Nolan and Pfannm{\"o}ller, J{\"o}rg P. and Badhwar, AmanPreet and Kennedy, David and Poline, Jean-Baptiste and Toro, Roberto and Cipollini, Ben and Rokem, Ariel and Clark, Daniel and Gorgolewski, Krzysztof J. and Craddock, R. Cameron and Craddock, R. Cameron and Clark, Daniel J. and Das, Samir and Madjar, C{\'e}cile and Sengupta, Ayan and Mohades, Zia and Dery, Sebastien and Deng, Weiran and Earl, Eric and Demeter, Damion V. and Mills, Kate and Mihai, Glad and Ruzic, Luka and Ketz, Nick and Reineberg, Andrew and Reddan, Marianne C. and Goddings, Anne-Lise and Gonzalez-Castillo, Javier and Gorgolewski, Krzysztof J. and Froehlich, Caroline and Dekel, Gil and Margulies, Daniel S. and Craddock, R. Cameron and Fulcher, Ben D. and Glatard, Tristan and Das, Samir and Adalat, Reza and Beck, Natacha and Bernard, R{\'e}mi and Khalili-Mahani, Najmeh and Rioux, Pierre and Rousseau, Marc-{\'E}tienne and Evans, Alan C. and Halchenko, Yaroslav O. and Castello, Matteo Visconti di Oleggio and Hern{\'a}ndez-P{\'e}rez, Ra{\'u}l and Morales, Edgar A. and Cuaya, Laura V. and Ito, Kaori L. and Liew, Sook-Lei and Johnson, Hans J. and Kan, Erik and Anglin, Julia and Borich, Michael and Jahanshad, Neda and Thompson, Paul and Liew, Sook-Lei and Margulies, Daniel S. and Falkiewicz, Marcel and Huntenburg, Julia M. and O'Connor, David and Clark, Daniel J. and Milham, Michael P. and Craddock, R. Cameron and Pereira, Ramon Fraga and Heinsfeld, Anibal S{\'o}lon and Franco, Alexandre Rosa and Buchweitz, Augusto and Meneguzzi, Felipe and Pfannm{\"o}ller, J{\"o}rg P. and Mesquita, Rickson and Herrera, Luis C. T. and Dentico, Daniela and Sochat, Vanessa and Nichols, B. Nolan and Heinsfeld, Anibal S{\'o}lon and Franco, Alexandre Rosa and Buchweitz, Augusto and Meneguzzi, Felipe and Villalon-Reina, Julio E. and Garyfallidis, Eleftherios},
title={2015 Brainhack Proceedings},
journal={GigaScience},
year={2016},
volume={5},
number={1},
pages={1--26},
abstract="I1 Introduction to the 2015 Brainhack Proceedings",
issn={2047-217X},
doi={10.1186/s13742-016-0147-0},
url={http://dx.doi.org/10.1186/s13742-016-0147-0}
}