From ad3cbabd73dc1bfa1d7fa51cda2add128830d3ce Mon Sep 17 00:00:00 2001 From: Brent Pedersen Date: Thu, 9 Feb 2017 16:38:20 -0700 Subject: [PATCH] show err --- tests/functional-test.sh | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/tests/functional-test.sh b/tests/functional-test.sh index c03af94..67b8eac 100755 --- a/tests/functional-test.sh +++ b/tests/functional-test.sh @@ -120,7 +120,7 @@ assert_exit_code 0 refaltend() { - ./vcfanno_linux64 -base-path tests/ref-alt-test/ tests/ref-alt-test/tmp_annotations.toml tests/ref-alt-test/tmp_calls.vcf.gz + vcfanno -base-path tests/ref-alt-test/ tests/ref-alt-test/tmp_annotations.toml tests/ref-alt-test/tmp_calls.vcf.gz } run check_ref_alt_posns refaltend assert_exit_code 0 @@ -128,3 +128,4 @@ assert_equal 3 $(grep -c ALT_60 $STDOUT_FILE) assert_equal 3 $(grep -c HET_60 $STDOUT_FILE) assert_equal 3 $(grep -c ALT_90 $STDOUT_FILE) assert_equal 3 $(grep -c HET_90 $STDOUT_FILE) +cat $STDERR_FILE