From b09bc4866150e81e7cd4c272061f752a35769827 Mon Sep 17 00:00:00 2001
From: Daniel Park <dpark@broadinstitute.org>
Date: Thu, 7 Dec 2023 18:56:40 -0500
Subject: [PATCH] dockerfile: install more R dependencies via apt

---
 Dockerfile | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 6a10928..ce8a913 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -16,16 +16,17 @@ RUN apt-get update && \
 RUN apt-get -y -qq install \
     less nano vim git wget curl jq zstd parallel locales \
     gnupg libssl-dev libcurl4-openssl-dev \
-    r-base r-base-dev \
+    libxml2 libxml2-dev \
+    imagemagick libmagick++-dev \
+    texlive-base texlive-latex-recommended texlive texlive-latex-extra texlive-extra-utils texlive-fonts-extra \
+    fonts-roboto \
+    r-base r-base-dev r-cran-devtools r-cran-tidyverse \
   && apt-get clean
 
 # Set default locale to en_US.UTF-8
 RUN locale-gen en_US.UTF-8
 ENV LANG="en_US.UTF-8" LANGUAGE="en_US:en" LC_ALL="en_US.UTF-8"
 
-# Install useful R packages
-RUN R -e "install.packages(c( 'devtools', 'BiocManager', 'tidyverse' ))"
-
 # Install reconstructR R package -- invalidate cache any time github main branch updates
 ADD https://api.github.com/repos/broadinstitute/reconstructR/git/refs/heads/main version.json
 RUN R -e "devtools::install_github('broadinstitute/reconstructR', dependencies=TRUE, upgrade='never')"