diff --git a/Dockerfile b/Dockerfile index cbd940e..58127a2 100644 --- a/Dockerfile +++ b/Dockerfile @@ -33,7 +33,7 @@ ENV LANG="en_US.UTF-8" LANGUAGE="en_US:en" LC_ALL="en_US.UTF-8" # Install necessary R dependencies for reconstructR that don't have apt packages RUN R -e "for (lib in c( 'LaplacesDemon', 'kmer', 'phylogram', 'aphid', 'insect' )) { install.packages(lib, dependencies=TRUE); library(lib, character.only=TRUE) }" # Rfast in CRAN is broken, install from github -RUN R -e "devtools::install_github('RfastOfficial/Rfast', dependencies=TRUE, upgrade='never'); library(Rfast)" +RUN R -e "devtools::install_github('RfastOfficial/Rfast', dependencies=TRUE); library(Rfast)" # Install reconstructR R package -- invalidate cache any time github main branch updates ADD https://api.github.com/repos/broadinstitute/reconstructR/git/refs/heads/main version.json