Set up logger for Heudiconv related functions

[mirestrepo]

Should we be using the logger for this stuff? Why are we printing instead?

Originally posted by @broarr in https://github.com/brown-bnc/xnat-tools/diffs

[broarr]

I want this one! I'm gonna take a crack at it this afternoon

[broarr]

#38 is my first attempt. The heudiconv functions look a little ugly, but it does work

[broarr]

It's double printing things from heudiconv. Not sure why. I'll take a peek at a later point

[mirestrepo]

Also, I was running with Fae today and saw that logs are not printed until the processing has finished. I don't recall that behavior when I run the tests, but we should get them streaming... I wonder if there is anything different in the stdout in Oscar...

[broarr]

This is likely a buffering behavior from the terminal. Different OSs will do different things when it comes to buffering output. You can try `export PYTHONUNBUFFERED=1` https://docs.python.org/3/using/cmdline.html#envvar-PYTHONUNBUFFERED

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On Thu, Jul 16, 2020 at 5:43 PM Maria Isabel Restrepo < ***@***.***> wrote: Also, I was running with Fae today and saw that logs are not printed until the processing has finished. I don't recall that behavior when I run the tests, but we should get them streaming... I wonder if there is anything different in the stdout in Oscar... — You are receiving this because you were assigned. Reply to this email directly, view it on GitHub <#36 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ALZRKTSCZU5LM4P47LRICNLR35YBJANCNFSM4OPARRRQ> .

-- <http://ccv.brown.edu/> Bradford N. Roarr <https://github.com/broarr> <https://directory.brown.edu/uuid/0adf6ab4-8d56-410a-8ac6-4b4ca136a534> Senior Research Software Engineer Data & Visualization Center for Computation and Visualization Brown University | CIS