pkgdown.yaml

on:
  push:
    branches:
      - main

name: Update-Docs

jobs:
  pkgdown:
    runs-on: macOS-latest

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

    steps:
      - uses: actions/checkout@v2

      - uses: r-lib/actions/setup-r@master
        with:
          r-version: 'release'

      - uses: r-lib/actions/setup-pandoc@master

      - name: Query dependencies
        run: |
          install.packages('remotes')
          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
        shell: Rscript {0}

      - name: Cache R packages
        uses: actions/cache@v1
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

      - name: Install dependencies
        run: |
          # Install package dependencies
          # Need to install MassSpecWavelet from Bioconductor
          if (!requireNamespace("BiocManager", quietly = TRUE))
            install.packages("BiocManager")
          BiocManager::install("MassSpecWavelet")
          BiocManager::install("impute")
          remotes::install_deps(dependencies = TRUE)
          remotes::install_cran("hyperSpec")

          # Install pkgs needed for this script
          remotes::install_cran("rcmdcheck")
          remotes::install_cran("roxygen2")
          remotes::install_cran("pkgdown")
        shell: Rscript {0}

      - name: Roxygenize
        run: |
          roxygen2::roxygenize()
        shell: Rscript {0}

      - name: Install package
        run: R CMD INSTALL .
        # working-directory: ./hyperSpec

      - name: Deploy package
        run: |
          git config --local user.email "actions@github.com"
          git config --local user.name "GitHub Actions"
          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'