_pkgdown.yml

authors:
  Michael Steinbaugh:
    href: https://steinbaugh.com
  Lorena Pantano:
    href: https://lpantano.github.io
  Rory Kirchner:
    href: https://github.com/roryk
  Victor Barrera:
    href: https://github.com/vbarrera
  Brad Chapman:
    href: https://github.com/chapmanb
  Mary Piper:
    href: https://github.com/marypiper
  Meeta Mistry:
    href: https://github.com/mistrm82
  Radhika Khetani:
    href: https://github.com/rkhetani
  Kayleigh Rutherford:
    href: https://github.com/KayleighRutherford
  Oliver Hofmann:
    href: https://github.com/ohofmann
  John Hutchinson:
    href: https://github.com/jnhutchinson
  Shannan Ho Sui:
    href: https://github.com/sjhosui
  Harvard Chan Bioinformatics Core:
    href: http://bioinformatics.sph.harvard.edu

reference:
  - title: Package Information
    contents:
    - bcbioRNASeq-package
  - title: S4 Object
    contents:
    - bcbioRNASeq
    - coerce
    - extract
    - show
    - updateObject
  - title: Data Functions
    contents:
    - starts_with("aggregate")
    - counts
    - metrics
    - sampleData
    - tmm
    - tpm
  - title: Plot Functions
    contents:
    - starts_with("plot")
  - title: Differential Expression Functions
    contents:
    - alphaSummary
    - contrastName
    - ends_with("Tables")
  - title: R Markdown Functions
    contents:
    - prepareRNASeqTemplate
  - title: Example Data
    desc: GSE65267
    contents:
    - ends_with("_small")