Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

All my pathway results are NA #106

Open
Elixir0822 opened this issue Apr 18, 2024 · 1 comment
Open

All my pathway results are NA #106

Elixir0822 opened this issue Apr 18, 2024 · 1 comment
Labels
bug Something isn't working

Comments

@Elixir0822
Copy link

Hello @cafferychen777
All my pathway results are NA, please help me see how to solve the problem.
20240418165140

daa_annotated_sub_method_results_df <-

  • pathway_annotation(pathway = "KO",
  •                  daa_results_df = daa_results_df,
    
  •                  ko_to_kegg = TRUE)
    

Starting pathway annotation...
DAA results data frame is not null. Proceeding...
KO to KEGG is set to TRUE. Proceeding with KEGG pathway annotations...
We are connecting to the KEGG database to get the latest results, please wait patiently.

The number of statistically significant pathways exceeds the database's query limit. Please consider breaking down the analysis into smaller queries or selecting a subset of pathways for further investigation.

Returning DAA results filtered annotation data frame...

@Elixir0822 Elixir0822 added the bug Something isn't working label Apr 18, 2024
@weiGu-88
Copy link

weiGu-88 commented Nov 1, 2024

Hello,I encountered the same issue as you did while running the code. May I ask if you have resolved it?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

No branches or pull requests

2 participants