Error in dim(mat) <- new_modes : the dims contain missing values

[qotjrud3]

hi.
I performed scTenifoldKnk using count data from seurat object as input matrix.
However, after reaching 100%, I could not go to the next step and this error occurred.
It was confirmed that there is no NA value in the input matrix.
Can you please let me know how I can fix this?

Thank you.

[dosorio]

Hi @qotjrud3,

Thanks for using scTenifoldKnk, I am not aware of what could be the problem. Could you please share with me the input matrix that replicates the problem?

Best wishes,

Daniel

[qotjrud3]

Dear Daniel, Thanks for quick reply. I attached the matrix that the problem occurred. In this matrix, mitochondrial and ribosomal genes have been removed, and only genes with rowsums > 0 are included. Thank you for your time.

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________________________________ 보낸 사람: Daniel Osorio ***@***.***> 보낸 날짜: 2022년 5월 2일 월요일 오후 10:07 받는 사람: cailab-tamu/scTenifoldKnk ***@***.***> 참조: qotjrud3 ***@***.***>; Mention ***@***.***> 제목: Re: [cailab-tamu/scTenifoldKnk] Error in dim(mat) <- new_modes : the dims contain missing values (Issue #12) Hi @qotjrud3<https://github.com/qotjrud3>, Thanks for using scTenifoldKnk, I am not aware of what could be the problem. Could you please share with me the input matrix that replicates the problem? Best wishes, Daniel — Reply to this email directly, view it on GitHub<#12 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ASE6GOS7242IL6NOWV6G55LVH7HS3ANCNFSM5U22INRA>. You are receiving this because you were mentioned.Message ID: ***@***.***>

[nihalasalem]

I am getting the same issue , I wonder if you have a suggestion for me

[shelbyhavel]

I am also having the same issue, have there been any updates for this one?

[sbarvaux]

Same issue on my side. Does anyone have a solution to address this problem ?