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Currently vafcorrect only considers unmapped reads within a window of variant location when analysing 'PASS' variant locations.
Improve either by setting FILTER as PASS for bed intervals at following line.
Currently vafcorrect only considers unmapped reads within a window of variant location when analysing 'PASS' variant locations.
Improve either by setting FILTER as PASS for bed intervals at following line.
vafCorrect/perl/lib/Sanger/CGP/Vaf/Data/ReadVcf.pm
Line 626 in 22b2b33
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