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README.html
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README.html
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<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta charset="utf-8" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />
<title></title>
<script src="site_libs/jquery-1.11.3/jquery.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
<script src="site_libs/jqueryui-1.11.4/jquery-ui.min.js"></script>
<link href="site_libs/tocify-1.9.1/jquery.tocify.css" rel="stylesheet" />
<script src="site_libs/tocify-1.9.1/jquery.tocify.js"></script>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<style type="text/css">
h1 {
font-size: 34px;
}
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text-align: left;
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<body>
<style type = "text/css">
.main-container {
max-width: 940px;
margin-left: auto;
margin-right: auto;
}
code {
color: inherit;
background-color: rgba(0, 0, 0, 0.04);
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img {
max-width:100%;
height: auto;
}
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padding-top: 12px;
}
button.code-folding-btn:focus {
outline: none;
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<style type="text/css">
/* padding for bootstrap navbar */
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padding-top: 51px;
padding-bottom: 40px;
}
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padding-top: 56px;
margin-top: -56px;
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padding-top: 56px;
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</style>
<script>
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</script>
<div class="container-fluid main-container">
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<script>
$(document).ready(function () {
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<script>
$(document).ready(function () {
// move toc-ignore selectors from section div to header
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font-size: 0.90em;
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</style>
<!-- setup 3col/9col grid for toc_float and main content -->
<div class="row-fluid">
<div class="col-xs-12 col-sm-4 col-md-3">
<div id="TOC" class="tocify">
</div>
</div>
<div class="toc-content col-xs-12 col-sm-8 col-md-9">
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html"></a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="index.html">Home</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
Mapping on reference genome set
<span class="caret"></span>
</a>
<ul class="dropdown-menu" role="menu">
<li>
<a href="mapping.html">Scripts</a>
</li>
<li>
<a href="mapping_results.html">Mapping table</a>
</li>
</ul>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
Unmapped analysis
<span class="caret"></span>
</a>
<ul class="dropdown-menu" role="menu">
<li>
<a href="unmapped.html">Scripts</a>
</li>
<li>
<a href="by_sample-report.html">Centrifuge results by sample</a>
</li>
<li>
<a href="all-report.html">Centrifuge results pooled</a>
</li>
</ul>
</li>
<li>
<a href="phylogeny.html">Phylogenetic analysis</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
<div class="fluid-row" id="header">
</div>
<div id="aphid_microbiome_website" class="section level1">
<h1>Aphid_microbiome_website</h1>
</div>
</div>
</div>
</div>
<script>
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}
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</script>
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<script>
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document.getElementsByTagName("head")[0].appendChild(script);
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</body>
</html>