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<!DOCTYPE html>
<html lang="en">
<head>
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<title>Samuel C. A.</title>
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<meta property="og:url" content="https://chagas98.github.io/" />
<meta property="og:type" content="article" />
<meta property="og:title" content="Samuel Chagas - Computational Biologist" />
<meta property="og:description" content="Exploring biodiversity through biological and molecular data." />
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<meta property="twitter:title" content="Samuel Chagas - Computational Biologist" />
<meta property="twitter:description" content="Exploring biodiversity through biological and molecular data." />
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</head>
<body class="index-page">
<header id="header" class="header d-flex flex-column justify-content-center">
<i class="header-toggle d-xl-none bi bi-list"></i>
<nav id="navmenu" class="navmenu">
<ul>
<li><a href="#hero" class="active"><i class="bi bi-house navicon"></i><span>Home</span></a></li>
<li><a href="#about"><i class="bi bi-person navicon"></i><span>About</span></a></li>
<li><a href="#projects"><i class="bi bi-hdd-stack navicon"></i><span>Projects</span></a></li>
<li><a href="#contact"><i class="bi bi-envelope navicon"></i><span>Contact</span></a></li>
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<img src="assets/img/profile-img.jpg" alt="Profile Photo" class="profile-photo">
<h2>Samuel Chagas de Assis</h2>
</div>
<div class="col-lg-9 hero-header">
<p>I'm <span class="typed" data-typed-items="Computational Biologist, Biotechnologist">Computational Biologist</span><span class="typed-cursor typed-cursor--blink" aria-hidden="true"></span></p>
<div class="social-links">
<a href="https://github.com/chagas98"><i class="bi bi-github"></i></a>
<a href="https://twitter.com/schagas98"><i class="bi bi-twitter-x"></i></a>
<a href="https://www.linkedin.com/in/samuelchagass/"><i class="bi bi-linkedin"></i></a>
<a href="samuelchagasCV/samuelchagasCV.pdf" download><i class="bi bi-file-earmark-arrow-down-fill" aria-hidden="true"></i></a>
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<h2>About</h2>
<p> I’m a <strong class="px-1 sitename">Bachelor in Biotechnology</strong> and currently a <strong class="px-1 sitename">Computational Biocatalysis Intern</strong> at CNPEM. I’m experienced with data analysis in Python and R, particularly managing scientific approaches to biological data. As a biotechnologist and computational biologist, I believe in building great solutions for global problems, especially in the Global South, through molecular biodiversity. I aim to reconcile and navigate biological data. However, the solutions become reality when paradigms are formulated or shifted. This motivates me to combine computational and biological sciences to improve the understanding of biological processes using big data resources. In addition, I'm looking for opportunities to develop projects that bridge the gaps between the sequence-to-structure molecular knowledge. </p>
<p> My interests include, but are not limited to: <strong class="px-1 sitename">Genomics</strong>,<strong class="px-1 sitename">Biomolecular Modeling</strong>,<strong class="px-1 sitename">Structural Biology</strong>,<strong class="px-1 sitename">High-Performance Computing</strong>, and promoting <strong class="px-1 sitename">FAIR</strong> and <strong class="px-1 sitename">FOSS</strong> culture. These topics captivate me, but I believe great results arise from teamwork and strong relationships. That's why I am committed to fostering a <strong class="px-1 sitename">collaborative</strong>, <strong class="px-1 sitename">respectful</strong>, and <strong class="px-1 sitename">communicative</strong> environment with my teammates.</p>
<p> Check out more detailed info on the other websites and my CV. </p>
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<a href="samuelchagasCV/samuelchagasCV.pdf" download><i class="bi bi-file-earmark-arrow-down-fill"></i></a>
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<h2>Projects</h2>
<p>Here are some highlights of my professional and academic<strong class="px-1 sitename">coding</strong>journey, along with the projects I have worked on.</p>
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<div class="row">
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<h3 class="projects-title">Professional Experience</h3>
<div class="projects-item">
<h4>Computational Biocatalysis Internship</h4>
<h5>2023 - Present</h5>
<p><em>Brazilian Biorenewables National Laboratory (LNBR) in </em></p>
<p><em>Brazilian Center for Research in Energy and Materials (CNPEM), Campinas - São Paulo </em></p>
</div><!-- Edn projects Item -->
<div class="projects-item">
<h4>Freelancer in Clinical Data Analysis</h4>
<h5>2022 - 2023</h5>
<p><em>Upwork Plataform & SporeData Inc., Remote - Brazil/USA </em></p>
</div><!-- Edn projects Item -->
<div class="projects-item">
<h4>Electrical Projects Internship</h4>
<h5>2017 - 2018</h5>
<p><em>Itaipu Technological Park (PTI-BR), Foz do Iguaçu - Brazil </em></p>
</div><!-- Edn projects Item -->
</div>
<div class="col-lg-6" data-aos="fade-up" data-aos-delay="100">
<h3 class="projects-title">Immunogenetic landscape</h3>
<div class="projects-item">
<h4> Bachelor Thesis (Biotechnology)</h4>
<h5>2022 - 2023</h5>
<p><em>Federal University of Latin-American Integration (UNILA), Foz do Iguaçu - Brazil</em></p>
<p><a href="https://github.com/chagas98/sarscovHLAFoz">Genomic Analysis of SARS-CoV-2 Variants Detected in Foz do Iguaçu - Paraná/BR and the Impact of Missense Mutations on HLA-B-dependent Pathways</a></p>
</div><!-- Edn projects Item -->
<div class="projects-item">
<h4>Undergraduate Researcher (CNPQ/Araucaria Foundation Fellowship)</h4>
<h5>2020 - 2022</h5>
<p><em>Federal University of Latin-American Integration (UNILA), Foz do Iguaçu - Brazil</em></p>
<p><a href="https://chagas98.github.io/hlafozpublic/SupplementaryMaterial.html">HLA-B Allelic Profile in Patients Admitted for COVID-19 in the Intensive Care Unit (ICU) of the Hospital Municipal Padre Germano Lauck (Foz do Iguaçu/PR, Brazil) Between 2020 and 2021</a></p>
</div><!-- Edn projects Item -->
<h3 class="projects-title">RNA Folding & Kinetic Modeling</h3>
<div class="projects-item">
<h4>Carpincho RNA Toehold Designer</h4>
<h5>2020 - 2021</h5>
<p><em> International Genetically Engineering Machine Competition - iGEM (2021)</em></p>
<p><a href="https://github.com/igemsoftware2021/CarpinchoToeholdDesigner">Carpincho Toehold Generator - Design of Toeholds for miRNAs detection</a></p>
</div><!-- Edn projects Item -->
<div class="projects-item">
<h4>Kinetic Modeling for Paratransgenesis</h4>
<h5>2020 - 2021</h5>
<p><em> International Genetically Engineering Machine Competition - iGEM (2021)</em></p>
<p><a href="https://github.com/chagas98/iGEM2021_Modeling">Kinetic model with parameter optimization</a></p>
</div><!-- Edn projects Item -->
<h3 class="projects-title">Learning for fun</h3>
<div class="projects-item pb-0">
<h4>MiVectorViz</h4>
<h5>2022</h5>
<p><a href="https://github.com/chagas98/iGEM2021_Modeling">MiVectorViz</a> is a Shiny Application to explore the plasmapR package features. The application aims to faciliate plotting plasmid maps from genbank files. (In construction)</p>
</div><!-- Edn projects Item -->
<div class="projects-item pb-0">
<h4>Twitter Capybara BOT</h4>
<h5>2022</h5>
<p><a href="https://github.com/chagas98/TwitterCapybaraBOT">@BiotecUnilaBOT</a> is a X/Twitter Bot, automatized by TwitterCapybaraBOT. It might help find newer students or provide information for people interested to know about Bsc. Biotechnology-UNILA. Exploring tweepy package, Twitter API v2 and Github Actions (descontinued due X's licenses)</p>
</div><!-- Edn projects Item -->
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<h2>Contact</h2>
<p>Feel free to reach out for collaborations, opportunities, or just to connect. I look forward to hearing from you!</p>
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<h3>Address</h3>
<p>São Paulo - Brazil</p>
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<h3>Email</h3>
<p>[email protected]</p>
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<span>Copyright</span> <strong class="px-1 sitename">Samuel Chagas</strong> <span>All Rights Reserved</span>
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