You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I've been running into some issues when running multiple folds in parallel some of them fail with this error. Any ideas what I might try? it seems to not do this when running multipel
Traceback (most recent call last):
File "/aian/scripts/Chai/run_chai.py", line 25, in <module>
output_paths = run_inference(
^^^^^^^^^^^^^^
File "/software/envs/chai/lib/python3.11/site-packages/torch/utils/_contextlib.py", line 115, in decorate_context
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/software/envs/chai/lib/python3.11/site-packages/chai_lab/chai1.py", line 271, in run_inference
chains = load_chains_from_raw(fasta_inputs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/software/envs/chai/lib/python3.11/site-packages/chai_lab/data/dataset/inference_dataset.py", line 164, in load_chains_from_raw
conformer_generator = RefConformerGenerator()
^^^^^^^^^^^^^^^^^^^^^^^
File "/software/envs/chai/lib/python3.11/site-packages/chai_lab/data/sources/rdkit.py", line 58, in __init__
conformers_cache_file = paths.cached_conformers.get_path().as_posix()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/software/envs/chai/lib/python3.11/site-packages/chai_lab/utils/paths.py", line 51, in get_path
download(self.url, path=self.path)
File "/software/envs/chai/lib/python3.11/site-packages/chai_lab/utils/paths.py", line 39, in download
tmp_path.rename(path)
File "/software/envs/chai/lib/python3.11/pathlib.py", line 1175, in rename
os.rename(self, target)
FileNotFoundError: [Errno 2] No such file or directory: '/software/envs/chai/lib/python3.11/site-packages/downloads/conformers_v1.download_tmp' -> '/software/envs/chai/lib/python3.11/site-packages/downloads/conformers_v1.apkl'
The text was updated successfully, but these errors were encountered:
arogozhnikov
changed the title
file not found error when running multiple jobs
Race condition in downloads when running multiple jobs
Sep 29, 2024
arogozhnikov
changed the title
Race condition in downloads when running multiple jobs
Race condition in downloads when running multiple jobs (manifests as 'file not found')
Sep 29, 2024
Hi! Truly truly amazing release. Congratulations!
I've been running into some issues when running multiple folds in parallel some of them fail with this error. Any ideas what I might try? it seems to not do this when running multipel
The text was updated successfully, but these errors were encountered: