{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":327454551,"defaultBranch":"trunk","name":"czgenepi","ownerLogin":"chanzuckerberg","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-01-06T23:40:20.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/19917299?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1725992896.0","currentOid":""},"activityList":{"items":[{"before":"0b1893ca481264b9264bdf845f78b600046190e5","after":null,"ref":"refs/heads/danrlu-patch-1","pushedAt":"2024-09-10T18:28:16.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"}},{"before":"13664c65d57fdee8b0d3b85de510948105598d12","after":"244c5982ab801531aa8bade5883ad60490fe1be1","ref":"refs/heads/trunk","pushedAt":"2024-09-10T18:28:15.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"},"commit":{"message":"Bump up number of closest sequences for targeted trees (#1711)\n\n* Update type_plugins.py\r\n\r\n* Update type_plugins.py\r\n\r\n* Update test_export.py\r\n\r\n* Update test_mpx_export.py\r\n\r\n* Update test_export.py","shortMessageHtmlLink":"Bump up number of closest sequences for targeted trees (#1711)"}},{"before":"1925deacebea2cffa5ae48f81906a594f5e7f3ca","after":"0b1893ca481264b9264bdf845f78b600046190e5","ref":"refs/heads/danrlu-patch-1","pushedAt":"2024-09-10T17:31:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"},"commit":{"message":"Update test_export.py","shortMessageHtmlLink":"Update test_export.py"}},{"before":"e9031fab421740423d0417c213be60b86da5fdc7","after":"1925deacebea2cffa5ae48f81906a594f5e7f3ca","ref":"refs/heads/danrlu-patch-1","pushedAt":"2024-09-10T17:24:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"},"commit":{"message":"Update test_mpx_export.py","shortMessageHtmlLink":"Update test_mpx_export.py"}},{"before":"efb7012cd5e39fa297e9bf5700c4de7750a53ef2","after":"e9031fab421740423d0417c213be60b86da5fdc7","ref":"refs/heads/danrlu-patch-1","pushedAt":"2024-09-10T17:13:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"},"commit":{"message":"Update test_export.py","shortMessageHtmlLink":"Update test_export.py"}},{"before":"5a57b2791556da9d1b345ce6aeab2518080f0078","after":"efb7012cd5e39fa297e9bf5700c4de7750a53ef2","ref":"refs/heads/danrlu-patch-1","pushedAt":"2024-09-10T16:55:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"},"commit":{"message":"Update type_plugins.py","shortMessageHtmlLink":"Update type_plugins.py"}},{"before":null,"after":"5a57b2791556da9d1b345ce6aeab2518080f0078","ref":"refs/heads/danrlu-patch-1","pushedAt":"2024-09-10T16:32:01.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"},"commit":{"message":"Update type_plugins.py","shortMessageHtmlLink":"Update type_plugins.py"}},{"before":"901f313d390873149641841c2771b6b9b245de05","after":null,"ref":"refs/heads/vince/banner-for-mpox-update","pushedAt":"2024-09-10T15:21:55.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"}},{"before":"93e8ed0231cc9144bdea73f293cb7d724f92878c","after":"13664c65d57fdee8b0d3b85de510948105598d12","ref":"refs/heads/trunk","pushedAt":"2024-09-10T15:21:52.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"},"commit":{"message":"Banner notifying users about mpox update (#1710)\n\n* In-app mpox update banner\r\n\r\n* Right, right, gotta have a treatment\r\n\r\n* Lint roller","shortMessageHtmlLink":"Banner notifying users about mpox update (#1710)"}},{"before":"54302391a20e544b70900175d0a1f129c0853581","after":"901f313d390873149641841c2771b6b9b245de05","ref":"refs/heads/vince/banner-for-mpox-update","pushedAt":"2024-09-10T00:42:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vincent-czi","name":null,"path":"/vincent-czi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89553795?s=80&v=4"},"commit":{"message":"Lint roller","shortMessageHtmlLink":"Lint roller"}},{"before":null,"after":"54302391a20e544b70900175d0a1f129c0853581","ref":"refs/heads/vince/banner-for-mpox-update","pushedAt":"2024-09-10T00:27:21.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"vincent-czi","name":null,"path":"/vincent-czi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89553795?s=80&v=4"},"commit":{"message":"Right, right, gotta have a treatment","shortMessageHtmlLink":"Right, right, gotta have a treatment"}},{"before":"bfca09119bf6ed288dd4ab78b9d9903b22f43f9e","after":null,"ref":"refs/heads/danrlu-patch-1","pushedAt":"2024-09-10T00:12:40.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"vincent-czi","name":null,"path":"/vincent-czi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89553795?s=80&v=4"}},{"before":"c9cb6701ffcc5a34e68cf5be3ea258332455a443","after":"93e8ed0231cc9144bdea73f293cb7d724f92878c","ref":"refs/heads/trunk","pushedAt":"2024-09-10T00:12:39.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vincent-czi","name":null,"path":"/vincent-czi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89553795?s=80&v=4"},"commit":{"message":"Update MPX_template.yaml (#1709)","shortMessageHtmlLink":"Update MPX_template.yaml (#1709)"}},{"before":null,"after":"bfca09119bf6ed288dd4ab78b9d9903b22f43f9e","ref":"refs/heads/danrlu-patch-1","pushedAt":"2024-09-10T00:01:01.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"},"commit":{"message":"Update MPX_template.yaml","shortMessageHtmlLink":"Update MPX_template.yaml"}},{"before":"33d8bf2b47a762e096b85d7a6925deac523757f1","after":"86bc9b4c6c5d2fc027a09d61ee84958878326af1","ref":"refs/heads/heathj/dev-deploy-theia","pushedAt":"2024-09-06T22:28:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakeyheath","name":"Jake Heath","path":"/jakeyheath","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/76011913?s=80&v=4"},"commit":{"message":"profiles","shortMessageHtmlLink":"profiles"}},{"before":"8e51fd1304db3cabe22c10ca779e87079aadf1b3","after":"33d8bf2b47a762e096b85d7a6925deac523757f1","ref":"refs/heads/heathj/dev-deploy-theia","pushedAt":"2024-09-06T22:23:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jakeyheath","name":"Jake Heath","path":"/jakeyheath","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/76011913?s=80&v=4"},"commit":{"message":"chore: update backends","shortMessageHtmlLink":"chore: update backends"}},{"before":"e540396398c3dd159da465811d25b9fef20d156b","after":null,"ref":"refs/heads/danrlu-patch-1","pushedAt":"2024-09-06T18:44:51.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"}},{"before":"002218360cd3bedd76b678d6a07342d5a81bfcb8","after":"c9cb6701ffcc5a34e68cf5be3ea258332455a443","ref":"refs/heads/trunk","pushedAt":"2024-09-06T18:44:50.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"},"commit":{"message":"Update export.py (#1708)","shortMessageHtmlLink":"Update export.py (#1708)"}},{"before":null,"after":"e540396398c3dd159da465811d25b9fef20d156b","ref":"refs/heads/danrlu-patch-1","pushedAt":"2024-09-06T18:34:16.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"},"commit":{"message":"Update export.py","shortMessageHtmlLink":"Update export.py"}},{"before":"0f1a41f583ae5d3aec4aa7724b1abadd6f12b5c2","after":null,"ref":"refs/heads/danrlu-patch-1","pushedAt":"2024-09-05T21:56:08.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"}},{"before":"9caac013de47f90154bc4f6c3533c251e0c9e5bb","after":"002218360cd3bedd76b678d6a07342d5a81bfcb8","ref":"refs/heads/trunk","pushedAt":"2024-09-05T21:56:06.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"},"commit":{"message":"Update MPX_template.yaml (#1707)","shortMessageHtmlLink":"Update MPX_template.yaml (#1707)"}},{"before":null,"after":"0f1a41f583ae5d3aec4aa7724b1abadd6f12b5c2","ref":"refs/heads/danrlu-patch-1","pushedAt":"2024-09-05T21:07:31.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"},"commit":{"message":"Update MPX_template.yaml","shortMessageHtmlLink":"Update MPX_template.yaml"}},{"before":"33e7e912bb8c8956535c211b1d1ba2640bda7d5c","after":null,"ref":"refs/heads/vince/update-mpox-tree-builds","pushedAt":"2024-09-05T20:50:43.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"vincent-czi","name":null,"path":"/vincent-czi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89553795?s=80&v=4"}},{"before":"c723b60ed9be2a77ac0270b947c09bd43efd5897","after":"9caac013de47f90154bc4f6c3533c251e0c9e5bb","ref":"refs/heads/trunk","pushedAt":"2024-09-05T20:50:41.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"vincent-czi","name":null,"path":"/vincent-czi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89553795?s=80&v=4"},"commit":{"message":"Update mpox tree builds to current snakemake workflow (#1706)\n\n* Fix yaml dump only to have expected args\r\n\r\n* WIP: Alter base MPX template for new mpox flow\r\n\r\n* WIP: Address notes from talking with Dan\r\n\r\n* WIP: Adjust `max_sequences` to match old MPX template\r\n\r\n* WIP: Keep `builds` in MPX output template\r\n\r\n* Remove no longer needed comments\r\n\r\n* Convert to being compatible with new mpox build\r\n\r\n* Modify paths to use latest mpox workflow format\r\n\r\n* Lint roller\r\n\r\n* Update run_nextstrain_mpx.sh\r\n\r\n* Fix test after mpox config format changes\r\n\r\n* Remove arguments in filter differentiation\r\n\r\n* Lint roller. Again.\r\n\r\n---------\r\n\r\nCo-authored-by: Dan Lu <20667188+danrlu@users.noreply.github.com>","shortMessageHtmlLink":"Update mpox tree builds to current snakemake workflow (#1706)"}},{"before":"466515a0af6b46f40661d67b05a02725b1f0e5c6","after":"33e7e912bb8c8956535c211b1d1ba2640bda7d5c","ref":"refs/heads/vince/update-mpox-tree-builds","pushedAt":"2024-09-05T20:39:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vincent-czi","name":null,"path":"/vincent-czi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89553795?s=80&v=4"},"commit":{"message":"Lint roller. Again.","shortMessageHtmlLink":"Lint roller. Again."}},{"before":"5e9eb058d6684d372eebb33abd16fa903797d09d","after":"466515a0af6b46f40661d67b05a02725b1f0e5c6","ref":"refs/heads/vince/update-mpox-tree-builds","pushedAt":"2024-09-05T20:28:21.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"vincent-czi","name":null,"path":"/vincent-czi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89553795?s=80&v=4"},"commit":{"message":"Remove arguments in filter differentiation","shortMessageHtmlLink":"Remove arguments in filter differentiation"}},{"before":"ac6bab2e2f01e984d7266fd34b33e04744714ddd","after":"5e9eb058d6684d372eebb33abd16fa903797d09d","ref":"refs/heads/vince/update-mpox-tree-builds","pushedAt":"2024-09-05T15:36:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"},"commit":{"message":"Update run_nextstrain_mpx.sh","shortMessageHtmlLink":"Update run_nextstrain_mpx.sh"}},{"before":"2def97338eb75dcb22307639424afac08bf6ae4b","after":null,"ref":"refs/heads/danrlu-patch-1","pushedAt":"2024-09-05T15:33:45.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"}},{"before":null,"after":"2def97338eb75dcb22307639424afac08bf6ae4b","ref":"refs/heads/danrlu-patch-1","pushedAt":"2024-09-05T15:30:20.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"danrlu","name":"Dan Lu","path":"/danrlu","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20667188?s=80&v=4"},"commit":{"message":"Update run_nextstrain_mpx.sh","shortMessageHtmlLink":"Update run_nextstrain_mpx.sh"}},{"before":"5ddc542df652e91edefc56237d1d83c5af6506f9","after":"ac6bab2e2f01e984d7266fd34b33e04744714ddd","ref":"refs/heads/vince/update-mpox-tree-builds","pushedAt":"2024-09-05T00:16:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"vincent-czi","name":null,"path":"/vincent-czi","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/89553795?s=80&v=4"},"commit":{"message":"Lint roller","shortMessageHtmlLink":"Lint roller"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xMFQxODoyODoxNi4wMDAwMDBazwAAAASyZiiX","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xMFQxODoyODoxNi4wMDAwMDBazwAAAASyZiiX","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0wNVQwMDoxNjo0Ny4wMDAwMDBazwAAAAStRPtA"}},"title":"Activity ยท chanzuckerberg/czgenepi"}