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RPT PARAMETERS

ghazalemir edited this page Jul 15, 2021 · 10 revisions

Launching a DEM simulation in Lethe requires an executable of the required solver (dem_2d or dem_3d based on the simulation dimension), and a parameters file (with extension .prm if it uses the parameter file format, or .json if it uses the JSON file format). The parameter file controls all aspect of the simulations. This section aims at describing the various parameters available within Lethe/DEM. The readers are recommended to visit here before reading the following.

Parameters file (.prm)

The parameter file is composed of different subsections. In the following, the principal subsections of a DEM parameter template file are explained.

In the parameter file format, the parameters are established one by one using the following syntax example: 'set time end = 10' would fix the end time to 10. The arguments can be either doubles, integers, strings or a choice between a predefined number of variable. In the parameter files, comments are preceded by the sharp symbol (e.g. '#comment').

  1. Simulation Control
  2. Timer
  3. Test
  4. Model Parameters
  5. Physical Properties
  6. Insertion Info
  7. Floating walls
  8. Mesh
  9. Boundary Motion

Simulation Control

This subsection contains the general information of the simulation, including time-step, end time, output path, log and output frequency. It is the most commonly modified section for a simulation. It should be mentioned that if the output path is specified in the parameter handler file, a folder with the specified name should be created before starting simulation in the working directory.

subsection simulation control
  # DEM time-step 
  set time step                 			 = 1e-5

  # Simulation end time
  set time end       					 = 0.2

  # File output prefix
  set output path                                        = ./

  # Log frequency
  set log frequency				         = 1000

  # Output frequency
  set output frequency            			 = 10000
end

Timer

This subsection deals with simulation timing information. If it is set to end, the simulation timing information will be printed at the end of simulation.

subsection timer
  set type    					         = end
end

Test

This subsection deals with simulation testing. If it is set to true, the sorted (using particle id) information of all particles will be printed in xyz format at the end of simulation. Then these information can be compared with predefined values to ensure reproducibility of the simulations.

subsection test
  # DEM test
  # Choices are true|false
  set type    					         = false
end

Model Parameters

In this subsection, DEM simulation parameters are defined. These parameters include contact detection method and its subsequent information (dynamic contact search size coefficient or contact detection frequency for dynamic or constant contact detection method), repartition method (once, frequent or dynamic) for load balancing (in parallel mode), neighborhood threshold (which defines the contact neighbor list size: neighborhood threshold * particle diameter), particle particle contact force method, particle wall contact force method and integration method. Choosing once repartition method, requires defining the step at which the code calls load balancing (load balance step). Dynamic repartition method requires defining load balance frequency, and in dynamic repartition method, we should define load balance threshold and dynamic load balance check frequency. In dynamic load balancing, the code checks the distribution of particles among the processors, every dynamic load balance check frequency steps, and if its non-uniformity exceeds load balance threshold, it calls load-balancing.

subsection model parameters
  # Contact detection method
  # Choices are constant|dynamic
  set contact detection method   			 = dynamic

  # Depending on the contact detection method, contact search size coefficient (safety factor multiplier for dynamic contact search) or contact detection frequency should be defined for dynamic and constant contact search methods, respectively.
  set dynamic contact search size coefficient	 	 = 0.9
  set contact detection frequency                 	 = 20

  # Load balancing method and its subsequent information
  set load balance method				 = frequent
  set load balance frequency				 = 200000

  # Particle-particle contact neighborhood size
  set neighborhood threshold				 = 1.6

  # Particle-particle contact force model
  # Choices are pp_linear|pp_nonlinear
  set particle particle contact force method             = pp_nonlinear

  # Particle-wall contact force model
  # Choices are pw_linear|pw_nonlinear
  set particle wall contact force method                 = pw_nonlinear

  # Integration method
  # Choices are euler|velocity_verlet
  set integration method				 = velocity_verlet
end

Physical Properties

In this subsection, physical properties of the simulation are defined. These properties include gravitational acceleration (gx, gy and gz), number of particle types, and for each type, particle diameter, particle density, Young's modulus of particle and wall, Poisson ratio of particle and wall, restitution coefficient of particle and wall, friction coefficient of particle and wall and rolling friction coefficient of particle and wall.

subsection model parameters
  # Gravitational acceleration in x direction
  set gx            		 			 = 0.0

  # Gravitational acceleration in y direction
  set gy            		 			 = 0.0

  # Gravitational acceleration in z direction
  set gz            		 			 = -9.81

  # Number of particle types
  set number of particle types	                         = 1

  # Entering particle type 0
    	subsection particle type 0

  # Size distribution of particle type 0
		set size distribution type		= uniform

  # Particle diameter
                set diameter            	 	= 0.005

  # Number of particles in type 0
		set number				= 132300

  # Particle density
                set density            	 		= 2000

  # Young's modulus of particle
                set young modulus particle         	= 1000000

  # Poisson ratio of particle
                set poisson ratio particle            	= 0.3

  # Coefficient of restitution of particle
                set restitution coefficient particle    = 0.95

  # Coefficient of friction of particle
                set friction coefficient particle       = 0.05

  # Coefficient of rolling friction of particle
                set rolling friction particle           = 0.1
	end

  # Young's modulus of wall
  set young modulus wall            			 = 1000000

  # Poisson ratio of wall
  set poisson ratio wall            			 = 0.3

  # Coefficient of restitution of wall
  set restitution coefficient wall           		 = 0.95

  # Coefficient of friction of wall
  set friction coefficient wall         		 = 0.05

  # Coefficient of rolling friction of wall
  set rolling friction wall         	      	  	 = 0.1
end

Insertion Info

Particle insertion information are defined in this section. These information include insertion method, inserted number of particles at each insertion step, insertion frequency, dimensions of the insertion box, approximate initial distance between particles at insertion steps and information about randomness of initial positions of particles. If insertion method is uniform, the particles are uniformly (without randomness in initial location) inserted. On the other hand, in non_uniform insertion, initial locations of particles in x and y directions are chosen randomly. Using non_uniform insertion, insertion random number range and insertion random number seed are also required in the parameter handler file.

subsection insertion info
  # Insertion method
  # Choices are uniform|non_uniform
  set insertion method				        = non_uniform

  # Number of inserted particles at each insertion step. This value may change automatically if the insertion box is not adequately large to handle all the inserted particles
  set inserted number of particles at each time step    = 100

  # Insertion frequency
  set insertion frequency            		 	= 20000

  # Insertion box dimensions (xmin, xmax, ymin, ymax, zmin, zmax)
  set insertion box minimum x            	 	= -0.05
  set insertion box minimum y            	        = -0.05
  set insertion box minimum z            	        = -0.03
  set insertion box maximum x            	        = 0.05
  set insertion box maximum y           	 	= 0.05
  set insertion box maximum z            	        = 0.07

  # This value controls the distance between center of inserted particles (the distance is: [distance threshold] * [diameter of particles]). The distance is modified by a random number if non_uniform insertion is chosen
  set insertion distance threshold			= 2

  # Random number range and seed for non_uniform insertion
  set insertion random number range			= 0.75
  set insertion random number seed			= 19
end

Floating Walls

In this subsection, the information of floating walls are defined. First of all, total number of floating walls is specified. Then for each floating wall, we should specify its normal vector, a point on the wall, start and end times.

subsection floating walls
  # Total number of floating walls
    set number of floating walls	                = 1
    	subsection wall 0

  # Defining a point on the floating wall
		subsection point on wall
			set x				= 0
			set y				= 0
			set z				= -0.06
		end

  # Defining normal vector of the floating wall
		subsection normal vector
			set nx				= 0	
			set ny				= 0.5
			set nz				= 1
		end

  # Starting time of the floating wall
		set start time				= 0

  # Ending time of the floating wall
		set end time				= 0.2
    	end
end

Mesh

This subsection provides information of the simulation geometry and meshing. The simulation geometry shape and size, number of refinements and other required information can be provided here. It should be mentioned that meshes from gmsh can also be defined in this section by setting the type = gmsh

subsection mesh
  # Mesh type
  # Choices are dealii|gmsh
  set type                  				= dealii

  # Grid type in dealii
  set grid type      	     				= hyper_ball

  # Dealii grid arguments
  set grid arguments       				= 0.0, 0.0, 0.0 : 0.1 : true

  # Grid initial refinement
  set initial refinement   				= 3
end

Boundary Motion

In this subsection, motion of boundaries are defined. First of all, number of boundary motion is specified. Then for each boundary motion, information of motion are defined. There are two boundary motion types: rotational (around the center) and translational. For rotational motion, rotational speed and rotational vector are required, while for translational motion, the speed should be defined in each direction.

subsection mesh
  # Total number of boundary motion
  set number of boundary motion         		= 1

  # For each motion, we need a separate subsection
    subsection moving boundary 0

  # ID of moving boundary
	set boundary id					= 4

  # Motion type
  # Choices are rotational|translational
        set type              				= rotational

  # Rotational speed magnitude
	set rotational speed				= 2.5

  # Rotational vector
	set rotational vector x				= 1
	set rotational vector y				= 0
	set rotational vector z				= 0
    end

  # OR for translational motion
    subsection moving boundary 0

  # ID of moving boundary
	set boundary id	 				= 4

  # Motion type
  # Choices are rotational|translational
        set type               				= translational

  # Speed in each direction
	set speed x					= 0.15
	set speed y					= 0
	set speed z					= 0
    end
end
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