-
Notifications
You must be signed in to change notification settings - Fork 35
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Calculate position to exon/intron boundary #307
Comments
I think we want to have the following:
@pnrobinson please correct I'll try to implement this small API addition for 0.23 together with stabilizing experimental dbNSFP/generic TSV/VCF support. |
I would find this feature very useful as well. Please let me know when it's implemented. |
Postponing, will welcome tested PRs. |
If this is still open I will work on this. |
@ielis we have some of this functionality in other code. Can it be transferred easily to Jannovar as library code? |
For many applications, it would be useful to know the number of nucleotide residues that a variant is locatged away from the exon/intron boundary. This is basically just Delta (exon end, position). We need to consider if we want to take the absolute value of this distance or not--if we do not, then the sign of the distance encodes whether the distance is from the previous acceptor site (positive) or preceding the next donor site (negative).
.
The text was updated successfully, but these errors were encountered: