diff --git a/DESCRIPTION b/DESCRIPTION index aa75ca1..b5aa1f8 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -44,9 +44,6 @@ Depends: methods, MultiAssayExperiment, R (>= 4.1.0) -#Remotes: -# url::http://promshift.genereg.net/CAGEr/PackageSource/ENCODEprojectCAGE_1.0.1.tar.gz, -# url::http://promshift.genereg.net/CAGEr/PackageSource/ZebrafishDevelopmentalCAGE_0.99.0.tar.gz Suggests: BSgenome.Dmelanogaster.UCSC.dm3, BSgenome.Drerio.UCSC.danRer7, @@ -54,14 +51,11 @@ Suggests: BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm9, DESeq2, -# ENCODEprojectCAGE, FANTOM3and4CAGE, ggseqlogo, BiocStyle, knitr, rmarkdown -# rmarkdown, -# ZebrafishDevelopmentalCAGE Description: The _CAGEr_ package identifies transcription start sites (TSS) and their usage frequency from CAGE (Cap Analysis Gene Expression) sequencing data. It normalises raw CAGE tag count, clusters TSSs into tag clusters (TC) and