diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml index ba1f94f..9882260 100644 --- a/.github/workflows/test-coverage.yaml +++ b/.github/workflows/test-coverage.yaml @@ -1,48 +1,61 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help on: push: - branches: - - main - - master + branches: [main, master] pull_request: - branches: - - main - - master + branches: [main, master] -name: test-coverage +name: test-coverage.yaml + +permissions: read-all jobs: test-coverage: - runs-on: macOS-latest + runs-on: ubuntu-latest env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v4 - - uses: r-lib/actions/setup-r@v1 + - uses: r-lib/actions/setup-r@v2 + with: + use-public-rspm: true - - uses: r-lib/actions/setup-pandoc@v1 + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::covr, any::xml2 + needs: coverage - - name: Query dependencies + - name: Test coverage run: | - install.packages('remotes') - saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) - writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") + cov <- covr::package_coverage( + quiet = FALSE, + clean = FALSE, + install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") + ) + covr::to_cobertura(cov) shell: Rscript {0} - - name: Restore R package cache - uses: actions/cache@v2 + - uses: codecov/codecov-action@v4 with: - path: ${{ env.R_LIBS_USER }} - key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} - restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- - - - name: Install dependencies + fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }} + file: ./cobertura.xml + plugin: noop + disable_search: true + token: ${{ secrets.CODECOV_TOKEN }} + + - name: Show testthat output + if: always() run: | - install.packages(c("remotes")) - remotes::install_deps(dependencies = TRUE) - remotes::install_cran("covr") - shell: Rscript {0} + ## -------------------------------------------------------------------- + find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true + shell: bash - - name: Test coverage - run: covr::codecov() - shell: Rscript {0} + - name: Upload test results + if: failure() + uses: actions/upload-artifact@v4 + with: + name: coverage-test-failures + path: ${{ runner.temp }}/package diff --git a/README.md b/README.md index daa2f10..d7f0283 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ # amerifluxr [![R-CMD-check](https://github.com/chuhousen/amerifluxr/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/chuhousen/amerifluxr/actions/workflows/R-CMD-check.yaml) -[![codecov](https://codecov.io/gh/chuhousen/amerifluxr/branch/master/graph/badge.svg)](https://codecov.io/gh/chuhousen/amerifluxr) + [![Codecov test coverage](https://codecov.io/gh/chuhousen/amerifluxr/graph/badge.svg)](https://app.codecov.io/gh/chuhousen/amerifluxr) [![CRAN\_Status\_Badge](https://www.r-pkg.org/badges/version/amerifluxr)](https://cran.r-project.org/package=amerifluxr) ![CRAN\_Downloads](https://cranlogs.r-pkg.org/badges/grand-total/amerifluxr)