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[FEAT] Add support for logit-normal distributions for parameters #615

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liunelson opened this issue Sep 26, 2024 · 1 comment · May be fixed by #617
Open

[FEAT] Add support for logit-normal distributions for parameters #615

liunelson opened this issue Sep 26, 2024 · 1 comment · May be fixed by #617

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@liunelson
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Problem 5 of the monthly demo scenario has three models A, B, and C.

Model C is extracted from this paper:
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1012263

Its configuration (Table 1) requires one of the parameters \epsilon^{DC} to be a logit-normal distribution (with \mu = -1.46 and \sigma = 0.71).

Logit-normal distributions are supported by MIRA (present in its probonto.py) but it's missing from PyCIEMSS:
https://github.com/ciemss/pyciemss/blob/main/pyciemss/mira_integration/distributions.py

@djinnome djinnome linked a pull request Oct 1, 2024 that will close this issue
@SamWitty
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@liunelson , do you have an example AMR we can use as a test case for this?

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