From 0c5cfe0c33acd83a64450924471c9233174a1765 Mon Sep 17 00:00:00 2001 From: Clemente Calabrese <115489880+cl3mente@users.noreply.github.com> Date: Wed, 19 Jun 2024 12:40:20 +0200 Subject: [PATCH] Update README.md --- README.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/README.md b/README.md index 2c34a3d..5226abd 100644 --- a/README.md +++ b/README.md @@ -14,13 +14,16 @@ Run this in your terminal to pull a pre-made image from DockerHub: `docker pull cl3mente/dualHGT:latest` After the pull is complete, you will have a working image that you can use to run dualHGT on a container - specify your local input folder binding it to an _'input'_ volume in the container: + `docker run -v your-input-folder/:/app/input cl3mente/dualhgt:latest` Alternatively, run this command from the folder itself: + `docker run -v $PWD/:/app/input cl3mente/dualhgt:latest` This folder will be the channel for Docker to communicate with your local machine. This is where the results will be written, in the _'output'_ subfolder. Once you run the container, run the dualHGT.py script with this command and the other options that you might want to customize: + `python dualHGT.py -i input/ [...]` ### Additional arguments