By Robert Haase ([email protected], based on work by Verena Kaynig ([email protected]), Ignacio Arganda-Carreras ([email protected]), Albert Cardona ([email protected]))
Applies a Weka model which was saved as OpenCL file. Train your model with trainWekaModel to save it as OpenCL file. It takes a 3D feature stack (e.g. first plane original image, second plane blurred, third plane edge image)and applies a pre-trained a Weka model. Take care that the feature stack has been generated in the sameway as for training the model!
Ext.CLIJx_applyOCLWekaModel(Image featureStack3D, Image prediction2D_destination, String loadModelFilename);
// init CLIJ and GPU
import net.haesleinhuepf.clij2.CLIJ;
import net.haesleinhuepf.clij.clearcl.ClearCLBuffer;
CLIJ2 clij2 = CLIJ2.getInstance();
// get input parameters
ClearCLBuffer featureStack3D = clij2.push(featureStack3DImagePlus);
prediction2D_destination = clij.create(featureStack3D);
// Execute operation on GPU
clij2.applyOCLWekaModel(clij, featureStack3D, prediction2D_destination, loadModelFilename);
//show result
prediction2D_destinationImagePlus = clij2.pull(prediction2D_destination);
prediction2D_destinationImagePlus.show();
// cleanup memory on GPU
clij2.release(featureStack3D);
clij2.release(prediction2D_destination);
Parts of the code of CLIJ Weka were copied over from the Trainable_Segmentation repository (link above). Thus,
this code is licensed GPL2 as well.
License: GPL
This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License 2
as published by the Free Software Foundation.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
Authors: Verena Kaynig ([email protected]), Ignacio Arganda-Carreras ([email protected])
Albert Cardona ([email protected])