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In fread function, the skip parameter can't to input > 2500000000. If the database file > 2500000000 lines, you need to split the raw database file.
For example:
/usr/bin/split -l 2499999999 hg19_eigen.txt hg19_eigen.txt_split
# if you have been write 2499999999 in sqlite file, you can start from "ab" for( i in c("aa", "ab", "ac", "ad")) { system(sprintf("mv hg19_eigen.txt_split%s hg19_eigen.txt", i)) new.colnames <- c("#Chr", "Start", "End", "Ref", "Alt", "Eigen") annovarR::sqlite.auto.build('eigen', database.dir = './', append = TRUE, new.colnames = new.colnames) system(sprintf("mv hg19_eigen.txt hg19_eigen.txt_split%s", i)) }
The text was updated successfully, but these errors were encountered:
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In fread function, the skip parameter can't to input > 2500000000. If the database file > 2500000000 lines, you need to split the raw database file.
For example:
The text was updated successfully, but these errors were encountered: