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Dependency

  • nvidia-docker: >20.x

Build

  1. Build docker image from Dockerfile
docker build -t defmap .
  1. Run a container in interactive mode
docker run -it --gpus 0 defmap bash

How to switch EMAN2 and DEFMap environments

If you want to use EMAN2 command, run the following command:

eval "$(/root/eman2-sphire-sparx/bin/conda shell.bash hook)"

If you want to use DEFMap, run the follwoing command:

eval "$(/opt/conda/bin/conda shell.bash hook)"
conda actiavte defmap