From 57add939d9f787808c9baa60c7fc3ed108582341 Mon Sep 17 00:00:00 2001
From: Irene Li <mengzeli@Irenes-MacBook-Pro.local>
Date: Mon, 19 Aug 2019 00:16:10 -0400
Subject: [PATCH] Add afhsb to epivis

---
 site/epivis.html   | 98 ++++++++++++++++++++++++++++++++++++++++++++++
 site/js/app.js     | 11 ++++++
 site/js/epidata.js |  9 +++++
 3 files changed, 118 insertions(+)

diff --git a/site/epivis.html b/site/epivis.html
index 5282998..754a59c 100644
--- a/site/epivis.html
+++ b/site/epivis.html
@@ -69,6 +69,8 @@ <h1>Load from Epidata API</h1>
          <br />
          <div class="option_label"><label><input type="radio" name="source_radio" id="radio_quidel" /> Quidel Data</label></div><span class="explanation">(source: private Quidel dataset)</span>
          <br />
+         <div class="option_label"><label><input type="radio" name="source_radio" id="radio_afhsb" /> AFHSB Data</label></div><span class="explanation">(source: private AFHSB dataset)</span>
+         <br />
          <div class="option_label"><label><input type="radio" name="source_radio" id="radio_nidss_flu" /> NIDSS - Influenza</label></div><span class="explanation">(source: <a target="_blank" href="http://nidss.cdc.gov.tw/en/CDCWNH01.aspx?dc=wnh">nidss.cdc.gov.tw</a>)</span>
          <br />
          <div class="option_label"><label><input type="radio" name="source_radio" id="radio_nidss_dengue" /> NIDSS - Dengue</label></div><span class="explanation">(source: <a target="_blank" href="http://nidss.cdc.gov.tw/en/SingleDisease.aspx?dc=1&amp;dt=4&amp;disease=061&amp;position=1">nidss.cdc.gov.tw</a>)</span>
@@ -733,6 +735,101 @@ <h1>Load from Epidata API</h1>
             </div><span class="explanation">(location to filter data by)</span>
          </div>
          <br />
+         <div class="csv_options" id="radio_afhsb_options" style="display: none;">
+            <div class="option_label">
+               <input type="text" name="text_afhsb_auth" id="text_afhsb_auth" size="8" />
+            </div><span class="explanation">(authorization token)</span>
+            <br />
+            <div class="option_label">
+               <select name="select_afhsb_location" id="select_afhsb_location">
+                  <option value="usa" selected="selected">U.S. National</option>
+                  <option value="hhs1">HHS Region 1</option>
+                  <option value="hhs2">HHS Region 2</option>
+                  <option value="hhs3">HHS Region 3</option>
+                  <option value="hhs4">HHS Region 4</option>
+                  <option value="hhs5">HHS Region 5</option>
+                  <option value="hhs6">HHS Region 6</option>
+                  <option value="hhs7">HHS Region 7</option>
+                  <option value="hhs8">HHS Region 8</option>
+                  <option value="hhs9">HHS Region 9</option>
+                  <option value="hhs10">HHS Region 10</option>
+                  <option value="cen1">Census Region 1</option>
+                  <option value="cen2">Census Region 2</option>
+                  <option value="cen3">Census Region 3</option>
+                  <option value="cen4">Census Region 4</option>
+                  <option value="cen5">Census Region 5</option>
+                  <option value="cen6">Census Region 6</option>
+                  <option value="cen7">Census Region 7</option>
+                  <option value="cen8">Census Region 8</option>
+                  <option value="cen9">Census Region 9</option>
+                  <option value="AK">AK</option>
+                  <option value="AL">AL</option>
+                  <option value="AR">AR</option>
+                  <option value="AZ">AZ</option>
+                  <option value="CA">CA</option>
+                  <option value="CO">CO</option>
+                  <option value="CT">CT</option>
+                  <option value="DC">DC</option>
+                  <option value="DE">DE</option>
+                  <option value="FL">FL</option>
+                  <option value="GA">GA</option>
+                  <option value="HI">HI</option>
+                  <option value="IA">IA</option>
+                  <option value="ID">ID</option>
+                  <option value="IL">IL</option>
+                  <option value="IN">IN</option>
+                  <option value="KS">KS</option>
+                  <option value="KY">KY</option>
+                  <option value="LA">LA</option>
+                  <option value="MA">MA</option>
+                  <option value="MD">MD</option>
+                  <option value="ME">ME</option>
+                  <option value="MI">MI</option>
+                  <option value="MN">MN</option>
+                  <option value="MO">MO</option>
+                  <option value="MS">MS</option>
+                  <option value="MT">MT</option>
+                  <option value="NC">NC</option>
+                  <option value="ND">ND</option>
+                  <option value="NE">NE</option>
+                  <option value="NH">NH</option>
+                  <option value="NJ">NJ</option>
+                  <option value="NM">NM</option>
+                  <option value="NV">NV</option>
+                  <option value="NY">NY</option>
+                  <option value="OH">OH</option>
+                  <option value="OK">OK</option>
+                  <option value="OR">OR</option>
+                  <option value="PA">PA</option>
+                  <option value="RI">RI</option>
+                  <option value="SC">SC</option>
+                  <option value="SD">SD</option>
+                  <option value="TN">TN</option>
+                  <option value="TX">TX</option>
+                  <option value="UT">UT</option>
+                  <option value="VA">VA</option>
+                  <option value="VT">VT</option>
+                  <option value="WA">WA</option>
+                  <option value="WI">WI</option>
+                  <option value="WV">WV</option>
+                  <option value="WY">WY</option>
+               </select>
+            </div><span class="explanation">(location to filter data by)</span>
+            <br />
+            <div class="option_label">
+               <select name="select_afhsb_flutype" id="select_afhsb_flutype">
+                  <option value="ili" selected="selected">ILI</option>
+                  <option value="flu1">Flu1</option>
+                  <option value="flu2">Flu2</option>
+                  <option value="flu3">Flu3</option>
+                  <option value="flu2-flu1">Flu2-Flu1</option>
+                  <option value="flu3-flu2">Flu3-Flu2</option>
+                  <option value="ili-flu3">ILI-Flu3</option>
+               </select>
+            </div><span class="explanation">(flu-type to filter data by)</span>
+            <br />
+         </div>
+         <br />
          <div class="csv_options" id="radio_nidss_flu_options" style="display: none;">
             <div class="option_label">
                <select name="select_nidss_flu_region" id="select_nidss_flu_region">
@@ -815,6 +912,7 @@ <h1>Load from Epidata API</h1>
                   <option value="wiki">wiki</option>
                   <option value="cdc">cdc</option>
                   <option value="quid">quid</option>
+                  <option value="afhsb">afhsb</option>
                   <option value="epic">epic</option>
                   <option value="sar3">sar3</option>
                   <option value="arch">arch</option>
diff --git a/site/js/app.js b/site/js/app.js
index 9244685..c877123 100644
--- a/site/js/app.js
+++ b/site/js/app.js
@@ -86,6 +86,7 @@ function run() {
     "radio_nidss_dengue",
     "radio_cdc",
     "radio_quidel",
+    "radio_afhsb",
     "radio_sensors",
     "radio_nowcast"
   ]);
@@ -411,6 +412,16 @@ function loadEpidata() {
       var title = "Quidel Data: " + location_t;
       Epidata.fetchQuidel(successFunction(title), onFailure, auth, location_v);
     })();
+  } else if ($("#radio_afhsb").is(":checked")) {
+    (function() {
+      var auth = $("#text_afhsb_auth").val();
+      var location_v = $("#select_afhsb_location :selected").val();
+      var location_t = $("#select_afhsb_location :selected").text();
+      var flutype_v = $("#select_afhsb_flutype :selected").val();
+      var flutype_t = $("#select_afhsb_flutype :selected").text();
+      var title = "AFHSB Data: " + location_t + ', ' + flutype_t;
+      Epidata.fetchAFHSB(successFunction(title), onFailure, auth, location_v, flutype_v);
+    })();
   } else if ($("#radio_sensors").is(":checked")) {
     (function() {
       var auth = $("#text_sensors_auth").val();
diff --git a/site/js/epidata.js b/site/js/epidata.js
index c64db77..814e8f8 100644
--- a/site/js/epidata.js
+++ b/site/js/epidata.js
@@ -30,6 +30,7 @@ var Epidata = (function() {
       'nidss_dengue': 200301,
       'cdc': 201301,
       'quidel': 201535,
+      'afhsb': 200001,
       'sensors': 201030,
       'nowcast': 200901,
    };
@@ -47,6 +48,7 @@ var Epidata = (function() {
    function loadEpidata(epidata, columns) {
       var datasets, points, row, col, year, week, date;
       datasets = [];
+      console.log(epidata.length);
       for(col = 0; col < columns.length; col++) {
          points = [];
          for(row = 0; row < epidata.length; row++) {
@@ -59,6 +61,7 @@ var Epidata = (function() {
             } else {
                throw {'msg': 'missing column "date" and "epiweek"'};
             }
+            console.log(year, week, epidata[row][columns[col]]);
             points.push(new EpiVis.Point(date, epidata[row][columns[col]]));
          }
          datasets.push(new EpiVis.Dataset(points, columns[col]));
@@ -77,6 +80,7 @@ var Epidata = (function() {
       }
       if(result >= 1) {
          // success
+         console.log("success");
          onSuccess(loadEpidata(epidata, columns));
       }
    }
@@ -130,6 +134,11 @@ var Epidata = (function() {
          var columns = ['value'];
          api.quidel(getCallback(onSuccess, onFailure, columns), auth, [api.range(first_epiweek.quidel, current_epiweek)], location);
       },
+      fetchAFHSB: function(onSuccess, onFailure, auth, location, flu_type) {
+         var columns = ['visit_sum'];
+         console.log(location, flu_type)
+         api.afhsb(getCallback(onSuccess, onFailure, columns), auth, location, [api.range(first_epiweek.afhsb, current_epiweek)], flu_type);
+      },
       fetchNIDSS_flu: function(onSuccess, onFailure, region, issue, lag) {
          var columns = ['visits', 'ili'];
          api.nidss_flu(getCallback(onSuccess, onFailure, columns), region, [api.range(first_epiweek.nidss_flu, current_epiweek)], issue, lag);