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b50f7dd..50b03ed 100644 --- a/data/validation+testing/number_check.py +++ b/data/validation+testing/number_check.py @@ -1,4 +1,5 @@ import json +import csv def main(): @@ -42,7 +43,8 @@ def main(): ['corridor']['file']] = [] for collision_item in sample['rui_location']['all_collisions']: for collision in collision_item['collisions']: - as_counts_in_corridor[sample['rui_location']['corridor']['file']].append(collision['as_3d_id']) + as_counts_in_corridor[sample['rui_location']['corridor']['file']].append( + collision['as_3d_id']) # print results for unique counts print(f''' @@ -59,6 +61,17 @@ def main(): for anatomical_structure in as_counts_in_corridor[key]: print(f'''\tThose AS are: {anatomical_structure} AS: ''') + # export result as CSV file + with open('corridors_with_their_as.csv', 'w', newline='') as f: + wr = csv.writer(f, delimiter=',') + wr.writerow(['corridor', 'number_of_unique_as','AS1','AS2', 'AS3','AS4', 'AS5','AS6', 'AS7' ]) + for key in as_counts_in_corridor: + row = [key, len(as_counts_in_corridor[key])] + for ana in as_counts_in_corridor[key]: + print(ana) + row.append(ana) + wr.writerow(row) + def count_tissue_blocks(response): """A function to count unique tissue blocks